Wall clock time and date at job start Tue Mar 31 2020 12:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.46805 * 240.00355 * 2 1 3 5 5 C 1.50702 * 109.47522 * 65.00079 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53001 * 109.47328 * 120.00328 * 2 1 3 14 14 N 1.46898 * 109.47205 * 294.99944 * 13 2 1 15 15 C 1.46898 * 111.00204 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47314 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.47101 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47124 * 179.97438 * 17 16 15 19 19 C 1.38252 * 119.93744 * 269.72532 * 18 17 16 20 20 C 1.38203 * 120.11183 * 179.77702 * 19 18 17 21 21 C 1.38704 * 120.06431 * 0.55979 * 20 19 18 22 22 C 1.38976 * 119.81830 * 359.62325 * 21 20 19 23 23 C 1.38194 * 119.94651 * 89.99431 * 18 17 16 24 24 O 1.36110 * 120.78095 * 180.26599 * 22 21 20 25 25 C 1.43173 * 116.71755 * 342.81840 * 24 22 21 26 26 C 1.53462 * 108.25318 * 46.16164 * 25 24 22 27 27 O 1.36107 * 119.39820 * 179.54162 * 21 20 19 28 28 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46596 * 299.99619 * 1 2 3 30 30 H 1.08998 * 109.47607 * 59.99437 * 1 2 3 31 31 H 1.09000 * 109.47527 * 304.99678 * 4 2 1 32 32 H 1.09001 * 109.47054 * 184.99768 * 4 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 34 34 H 1.08995 * 109.46978 * 54.99904 * 13 2 1 35 35 H 1.08999 * 109.47150 * 174.99508 * 13 2 1 36 36 H 1.00893 * 111.00163 * 56.04269 * 14 13 2 37 37 H 1.08999 * 109.46334 * 299.99582 * 15 14 13 38 38 H 1.09000 * 109.47222 * 59.99443 * 15 14 13 39 39 H 1.09006 * 109.46728 * 299.99675 * 16 15 14 40 40 H 1.09000 * 109.47192 * 59.99117 * 16 15 14 41 41 H 1.09001 * 109.46876 * 299.99030 * 17 16 15 42 42 H 1.08994 * 109.47677 * 59.99905 * 17 16 15 43 43 H 1.07998 * 119.94737 * 0.02797 * 19 18 17 44 44 H 1.08001 * 119.97080 * 180.28695 * 20 19 18 45 45 H 1.07997 * 119.96881 * 359.97438 * 23 18 17 46 46 H 1.09010 * 109.70819 * 165.85170 * 25 24 22 47 47 H 1.09000 * 109.70493 * 286.46832 * 25 24 22 48 48 H 1.09001 * 109.71276 * 59.94244 * 26 25 24 49 49 H 1.08996 * 109.71475 * 180.57305 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 1.6396 0.2743 -4.7997 9 14 2.9625 -1.9888 -3.9030 10 1 4.4159 -1.6845 -3.8861 11 1 2.6337 -2.8968 -2.7749 12 1 2.6093 -2.6463 -5.1868 13 6 2.0401 -0.7213 1.2492 14 7 1.6515 0.0373 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7025 0.1906 4.8892 17 6 2.1972 -0.5006 6.1613 18 6 1.7807 0.3048 7.3651 19 6 2.6158 1.2899 7.8587 20 6 2.2354 2.0337 8.9596 21 6 1.0195 1.7859 9.5793 22 6 0.1818 0.7931 9.0853 23 6 0.5673 0.0537 7.9769 24 8 -1.0179 0.5370 9.6748 25 6 -1.2042 1.0424 11.0014 26 6 -0.7217 2.4988 11.0331 27 8 0.6627 2.5202 10.6683 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6054 -1.7198 -1.2953 32 1 3.1262 -0.7994 -1.2057 33 1 1.8831 -0.0508 -5.6805 34 1 1.6055 -1.7198 1.2950 35 1 3.1264 -0.7996 1.2055 36 1 0.6530 0.1792 2.4753 37 1 1.6922 -1.6247 3.7299 38 1 3.2128 -0.7039 3.6399 39 1 2.1359 1.1889 4.8266 40 1 0.6156 0.2675 4.9161 41 1 1.7642 -1.4989 6.2242 42 1 3.2841 -0.5770 6.1342 43 1 3.5652 1.4812 7.3808 44 1 2.8875 2.8058 9.3405 45 1 -0.0814 -0.7191 7.5917 46 1 -2.2608 0.9993 11.2662 47 1 -0.6235 0.4473 11.7063 48 1 -1.2980 3.0925 10.3235 49 1 -0.8436 2.9048 12.0373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602570134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:42 Heat of formation + Delta-G solvation = -74.254148 kcal Electronic energy + Delta-G solvation = -25415.757213 eV Core-core repulsion = 21728.306112 eV Total energy + Delta-G solvation = -3687.451100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60715 -38.66243 -37.62428 -37.23640 -35.09150 -33.21536 -31.95689 -31.29586 -30.41290 -28.81887 -27.42661 -26.19603 -25.05598 -24.05520 -22.92213 -21.82721 -21.51284 -20.65941 -18.94927 -18.93374 -17.64154 -17.53191 -16.81202 -16.01590 -15.84728 -15.45879 -15.00796 -14.91689 -14.78657 -14.52284 -14.20521 -14.14163 -13.95551 -13.89452 -13.40226 -13.02273 -12.78015 -12.58220 -12.28560 -12.17724 -11.85835 -11.79094 -11.70883 -11.52158 -11.20951 -11.16909 -10.98256 -10.84385 -10.80337 -10.61833 -10.35584 -9.87384 -9.63425 -9.41040 -9.02799 -8.92983 -8.48836 -8.32473 -8.16959 -5.99233 -3.96017 0.94935 0.98606 2.60611 2.81265 3.33541 3.34829 3.40812 3.44543 3.76442 4.24633 4.29280 4.33243 4.42323 4.49367 4.58876 4.66936 4.81524 4.95320 4.98926 5.01608 5.07589 5.24525 5.29726 5.34359 5.35563 5.56940 5.59239 5.68153 5.72421 5.74695 5.80046 5.84648 5.98250 6.05290 6.14886 6.21281 6.27788 6.35665 6.41469 6.49689 6.50895 6.81311 7.00650 7.03891 7.09233 7.29480 7.34006 7.52913 7.65188 7.85897 8.60526 9.06598 9.63738 11.14210 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.001645 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.941379 B =17016.465498 C =17241.723513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.062 3.938 14 N -0.691 5.691 15 C 0.057 3.943 16 C -0.112 4.112 17 C -0.077 4.077 18 C -0.071 4.071 19 C -0.111 4.111 20 C -0.110 4.110 21 C 0.041 3.959 22 C 0.051 3.949 23 C -0.111 4.111 24 O -0.308 6.308 25 C 0.021 3.979 26 C 0.020 3.980 27 O -0.309 6.309 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.013 0.987 32 H 0.010 0.990 33 H 0.262 0.738 34 H 0.023 0.977 35 H 0.066 0.934 36 H 0.339 0.661 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 0.666 35.741 35.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.323 5.323 15 C -0.072 4.072 16 C -0.150 4.150 17 C -0.114 4.114 18 C -0.071 4.071 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.003 4.003 22 C 0.007 3.993 23 C -0.130 4.130 24 O -0.223 6.223 25 C -0.055 4.055 26 C -0.055 4.055 27 O -0.224 6.224 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.397 1.094 35.554 35.652 hybrid contribution -0.312 -1.506 0.020 1.539 sum -2.710 -0.412 35.574 35.680 Atomic orbital electron populations 1.21747 0.96244 1.00473 1.00824 1.21037 0.95242 1.00202 0.93053 0.91043 1.19605 0.95589 0.96024 0.93438 1.21146 1.35266 1.09525 0.89117 0.90818 1.25033 0.95733 0.96907 0.95967 1.69918 1.47253 1.39346 0.97959 0.86799 0.80652 0.84516 0.77409 1.20384 1.19127 1.21516 1.22154 1.00235 0.94431 0.89841 1.60527 1.19729 1.50564 1.01476 1.21959 1.00578 0.94992 0.89686 1.21559 1.01178 1.00084 0.92134 1.20559 1.01681 0.98027 0.91179 1.19659 0.93419 0.97182 0.96869 1.20867 1.00299 0.95789 0.95917 1.20439 0.95030 1.01418 0.96003 1.18891 0.96575 0.93551 0.91333 1.18868 0.87206 0.96349 0.96914 1.20320 0.96873 1.00339 0.95438 1.86320 1.31546 1.74859 1.29547 1.23623 1.04147 0.94560 0.83170 1.23623 0.81381 0.97175 1.03358 1.86305 1.26297 1.66479 1.43319 0.94116 0.94687 0.91343 0.96826 0.97122 0.92862 0.95917 0.91556 0.84247 0.95708 0.91176 0.90743 0.91987 0.90891 0.90459 0.84840 0.84804 0.84847 0.86065 0.90538 0.90430 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.53 2.55 -90.62 -0.23 -1.76 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 4 C -0.01 -0.21 3.51 -27.88 -0.10 -0.31 16 5 C -0.51 -14.62 8.96 -34.44 -0.31 -14.93 16 6 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 9 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.06 1.03 5.14 -3.82 -0.02 1.01 16 14 N -0.69 -9.84 6.50 -113.78 -0.74 -10.58 16 15 C 0.06 0.65 5.69 -3.83 -0.02 0.63 16 16 C -0.11 -1.07 5.46 -26.73 -0.15 -1.22 16 17 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 18 C -0.07 -0.64 5.13 -104.63 -0.54 -1.18 16 19 C -0.11 -0.95 9.69 -39.59 -0.38 -1.33 16 20 C -0.11 -1.00 9.96 -39.42 -0.39 -1.40 16 21 C 0.04 0.42 6.49 -39.14 -0.25 0.16 16 22 C 0.05 0.53 6.49 -39.14 -0.25 0.28 16 23 C -0.11 -1.08 9.62 -39.43 -0.38 -1.46 16 24 O -0.31 -2.94 10.42 -32.87 -0.34 -3.28 16 25 C 0.02 0.12 7.26 37.40 0.27 0.39 16 26 C 0.02 0.11 7.26 37.40 0.27 0.38 16 27 O -0.31 -2.85 10.42 -32.87 -0.34 -3.19 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.55 6.68 -51.92 -0.35 0.20 16 30 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 31 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 32 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 33 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.34 4.62 6.98 -39.30 -0.27 4.34 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 42 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 43 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.12 0.33 8.14 -51.92 -0.42 -0.10 16 47 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -32.85 391.34 -10.31 -43.15 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.48 Total: -0.04 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -2.40 Total: -21.89 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.03 Total: -37.96 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.68 Total: -6.48 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.85 -10.31 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602570134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.102 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds