Wall clock time and date at job start Tue Mar 31 2020 12:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00262 * 2 1 4 4 O 1.20828 * 119.99845 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00154 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46924 * 299.99534 * 5 3 2 7 7 C 1.52997 * 109.47078 * 60.00281 * 5 3 2 8 8 C 1.53006 * 109.46866 * 180.02562 * 5 3 2 9 9 C 1.50703 * 109.46967 * 174.99915 * 8 5 3 10 10 C 1.38280 * 119.92353 * 269.73011 * 9 8 5 11 11 C 1.38112 * 120.07363 * 179.72583 * 10 9 8 12 12 C 1.38910 * 119.91909 * 0.54169 * 11 10 9 13 13 N 1.39678 * 120.07119 * 179.70157 * 12 11 10 14 14 C 1.46502 * 120.00061 * 0.03270 * 13 12 11 15 15 C 1.53000 * 109.47017 * 179.97438 * 14 13 12 16 16 H 1.08995 * 109.47197 * 304.99615 * 15 14 13 17 17 C 1.53001 * 109.47243 * 64.99745 * 15 14 13 18 18 C 1.53003 * 109.46995 * 184.99544 * 15 14 13 19 19 C 1.50701 * 109.47227 * 174.99945 * 18 15 14 20 20 H 1.08004 * 119.99469 * 0.02562 * 19 18 15 21 21 C 1.37870 * 120.00136 * 179.97438 * 19 18 15 22 22 N 1.31513 * 120.00163 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00148 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47155 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47203 * 120.00009 * 23 21 19 26 26 H 1.48502 * 109.47431 * 240.00223 * 23 21 19 27 27 C 1.38908 * 119.85391 * 359.73198 * 12 11 10 28 28 C 1.38101 * 119.92402 * 359.97438 * 27 12 11 29 29 H 1.08994 * 109.47299 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47201 * 299.99841 * 1 2 3 31 31 H 1.09005 * 109.47388 * 59.99358 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99793 * 7 5 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 7 5 3 34 34 H 1.09004 * 109.47261 * 59.99965 * 7 5 3 35 35 H 1.09001 * 109.47326 * 295.00139 * 8 5 3 36 36 H 1.09000 * 109.46904 * 55.00491 * 8 5 3 37 37 H 1.08001 * 119.96413 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.04132 * 180.27124 * 11 10 9 39 39 H 0.97004 * 120.00039 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46926 * 299.99209 * 14 13 12 41 41 H 1.08994 * 109.47340 * 59.99365 * 14 13 12 42 42 H 1.08995 * 109.47130 * 59.99829 * 17 15 14 43 43 H 1.09001 * 109.47196 * 179.97438 * 17 15 14 44 44 H 1.09004 * 109.46715 * 299.99974 * 17 15 14 45 45 H 1.08996 * 109.47086 * 294.99849 * 18 15 14 46 46 H 1.09002 * 109.47001 * 54.99517 * 18 15 14 47 47 H 0.97000 * 120.00466 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.03487 * 179.97438 * 27 12 11 49 49 H 1.07999 * 119.96136 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5816 -1.2502 8 6 4.0001 2.7421 0.0002 9 6 5.4999 2.8224 0.1235 10 6 6.0865 2.8937 1.3737 11 6 7.4610 2.9617 1.4904 12 6 8.2537 2.9698 0.3498 13 7 9.6438 3.0448 0.4640 14 6 10.2673 3.1143 1.7879 15 6 11.7876 3.1877 1.6324 16 1 12.1326 2.3452 1.0332 17 6 12.1665 4.4970 0.9372 18 6 12.4446 3.1347 3.0131 19 6 13.9424 3.0832 2.8550 20 1 14.3817 3.0882 1.8684 21 6 14.7519 3.0307 3.9699 22 7 14.2169 3.0250 5.1713 23 14 16.6084 2.9661 3.7739 24 1 16.9547 2.9832 2.3300 25 1 17.2180 4.1436 4.4426 26 1 17.1286 1.7207 4.3934 27 6 7.6609 2.9038 -0.9047 28 6 6.2862 2.8299 -1.0141 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 3.8038 -0.4637 -1.2503 33 1 5.2013 0.6390 -1.2508 34 1 3.7228 1.0759 -2.1399 35 1 3.6862 3.2143 -0.9307 36 1 3.5383 3.2570 0.8426 37 1 5.4693 2.8921 2.2599 38 1 7.9187 3.0129 2.4673 39 1 10.1963 3.0508 -0.3333 40 1 9.9119 4.0022 2.3107 41 1 10.0035 2.2254 2.3608 42 1 11.8214 5.3395 1.5364 43 1 13.2496 4.5495 0.8269 44 1 11.6983 4.5347 -0.0464 45 1 12.1696 4.0236 3.5807 46 1 12.1044 2.2452 3.5435 47 1 14.7864 2.9877 5.9556 48 1 8.2744 2.9104 -1.7936 49 1 5.8246 2.7790 -1.9891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602619291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:33 Heat of formation + Delta-G solvation = -107.438522 kcal Electronic energy + Delta-G solvation = -25636.486494 eV Core-core repulsion = 21947.596412 eV Total energy + Delta-G solvation = -3688.890083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65548 -40.46859 -38.39583 -37.61478 -36.38430 -35.01266 -33.75288 -31.78026 -30.75972 -28.94452 -28.54503 -27.76971 -26.57008 -24.93556 -24.51927 -23.25602 -21.87285 -20.90060 -20.84547 -18.66830 -18.54545 -18.10842 -17.75554 -17.32127 -16.79610 -16.47325 -16.08186 -15.96315 -15.40495 -15.01298 -14.85603 -14.76259 -14.33775 -14.28535 -14.24608 -14.08647 -13.94862 -13.68370 -13.35722 -13.17128 -13.14566 -12.85468 -12.79662 -12.68139 -12.27724 -12.21154 -12.16271 -12.05223 -11.99701 -11.78712 -11.65768 -11.60547 -11.34357 -11.16086 -11.01938 -10.69318 -10.54860 -9.71790 -8.18352 -8.16688 -6.27463 0.63856 0.73534 1.15767 1.40206 1.41201 1.53378 1.79148 2.40696 2.62399 3.03195 3.15809 3.66273 3.89762 3.98048 4.04541 4.13387 4.18535 4.20410 4.28115 4.32840 4.33148 4.38292 4.42508 4.59273 4.65674 4.71745 4.75133 4.77592 4.86256 4.91951 4.94255 4.99572 5.01489 5.18030 5.22234 5.26620 5.30141 5.32168 5.41004 5.45052 5.50982 5.54469 5.61211 5.76483 5.86088 5.89215 6.06837 6.26276 6.50393 6.71155 6.88200 6.96030 7.41121 8.93814 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.001781 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.501327 B =15713.326955 C =16088.233657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.467 3.533 4 O -0.538 6.538 5 C -0.075 4.075 6 H 0.117 0.883 7 C -0.142 4.142 8 C -0.047 4.047 9 C -0.150 4.150 10 C -0.070 4.070 11 C -0.217 4.217 12 C 0.206 3.794 13 N -0.739 5.739 14 C 0.144 3.856 15 C -0.085 4.085 16 H 0.063 0.937 17 C -0.124 4.124 18 C 0.033 3.967 19 C -0.529 4.529 20 H 0.063 0.937 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.203 4.203 28 C -0.060 4.060 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.404 0.596 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.048 0.952 44 H 0.064 0.936 45 H -0.007 1.007 46 H -0.009 1.009 47 H 0.262 0.738 48 H 0.133 0.867 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.741 -5.092 -14.968 29.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.311 3.689 4 O -0.428 6.428 5 C -0.094 4.094 6 H 0.135 0.865 7 C -0.199 4.199 8 C -0.085 4.085 9 C -0.152 4.152 10 C -0.088 4.088 11 C -0.240 4.240 12 C 0.102 3.898 13 N -0.368 5.368 14 C 0.019 3.981 15 C -0.104 4.104 16 H 0.082 0.918 17 C -0.182 4.182 18 C -0.004 4.004 19 C -0.567 4.567 20 H 0.081 0.919 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.185 1.185 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.225 4.225 28 C -0.079 4.079 29 H 0.148 0.852 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.128 0.872 39 H 0.240 0.760 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.011 0.989 46 H 0.009 0.991 47 H 0.071 0.929 48 H 0.151 0.849 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -24.850 -4.804 -14.600 29.219 hybrid contribution 1.084 0.149 0.541 1.221 sum -23.765 -4.655 -14.059 28.002 Atomic orbital electron populations 1.23533 0.75070 1.05609 1.02439 1.86516 1.24784 1.33051 1.83599 1.24262 0.92727 0.81022 0.70871 1.90655 1.68032 1.37331 1.46799 1.21126 0.85319 0.99210 1.03745 0.86492 1.21831 1.02640 1.00752 0.94703 1.20234 0.91100 0.93460 1.03672 1.19456 0.94764 1.07955 0.93017 1.20918 0.93482 0.96731 0.97682 1.20761 0.94449 1.11567 0.97199 1.18137 0.83747 0.93444 0.94499 1.44767 1.03058 1.81227 1.07794 1.21198 0.92562 0.99755 0.84602 1.21205 0.92568 0.98583 0.98040 0.91819 1.21630 1.01173 0.96083 0.99274 1.18969 0.94668 0.94848 0.91949 1.21655 0.92776 1.49521 0.92763 0.91856 1.25936 1.03822 0.95122 0.95072 1.70101 1.36931 1.52064 0.98381 0.85456 0.79726 0.77555 0.78660 1.18480 1.20692 1.20692 1.20769 0.95774 1.10731 0.95243 1.20961 0.92268 0.96041 0.98617 0.85226 0.92166 0.91928 0.90863 0.90136 0.91676 0.90386 0.91205 0.85400 0.87229 0.76014 0.93327 0.93610 0.94135 0.93320 0.91693 0.98854 0.99103 0.92949 0.84902 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.81 10.47 -51.43 -0.54 -6.35 16 3 C 0.47 8.56 7.26 71.24 0.52 9.08 16 4 O -0.54 -12.88 15.67 21.96 0.34 -12.53 16 5 C -0.07 -1.11 2.82 -11.54 -0.03 -1.15 16 6 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 7 C -0.14 -1.71 8.69 71.98 0.63 -1.08 16 8 C -0.05 -0.79 4.19 29.85 0.13 -0.66 16 9 C -0.15 -2.85 4.72 -19.84 -0.09 -2.94 16 10 C -0.07 -1.53 9.69 22.25 0.22 -1.32 16 11 C -0.22 -5.70 9.31 22.40 0.21 -5.49 16 12 C 0.21 5.31 6.65 38.21 0.25 5.56 16 13 N -0.74 -20.05 5.46 -339.41 -1.85 -21.91 16 14 C 0.14 4.74 4.30 86.38 0.37 5.11 16 15 C -0.09 -3.25 2.37 -10.79 -0.03 -3.28 16 16 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 17 C -0.12 -4.30 8.88 71.98 0.64 -3.66 16 18 C 0.03 1.69 4.45 29.85 0.13 1.82 16 19 C -0.53 -29.04 8.41 25.60 0.22 -28.82 16 20 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 21 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 22 N -0.93 -56.26 13.29 21.44 0.28 -55.97 16 23 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 C -0.20 -4.26 9.90 22.40 0.22 -4.03 16 28 C -0.06 -1.09 7.95 22.25 0.18 -0.91 16 29 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.68 8.13 -2.38 -0.02 0.66 16 31 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 32 H 0.07 0.80 8.11 -2.39 -0.02 0.78 16 33 H 0.08 1.00 6.26 -2.39 -0.01 0.99 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 36 H 0.07 1.28 7.90 -2.39 -0.02 1.26 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.11 3.08 6.73 -2.91 -0.02 3.06 16 39 H 0.40 9.70 7.67 -92.71 -0.71 8.99 16 40 H 0.05 1.66 7.95 -2.39 -0.02 1.64 16 41 H 0.05 1.59 7.95 -2.39 -0.02 1.57 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 1.82 6.95 -2.39 -0.02 1.81 16 44 H 0.06 1.80 7.18 -2.38 -0.02 1.78 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 49 H 0.14 1.84 8.04 -2.91 -0.02 1.81 16 Total: -1.00 -66.87 398.89 5.68 -61.18 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.21 Total: 19.80 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 5.21 Total: -29.96 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -1.57 Total: -77.88 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.19 Total: -18.88 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -66.87 5.68 -61.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602619291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.255 kcal (2) G-P(sol) polarization free energy of solvation -66.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds