Wall clock time and date at job start Tue Mar 31 2020 12:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34238 * 116.99946 * 2 1 4 4 O 1.20822 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99893 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47055 * 300.00232 * 5 3 2 7 7 C 1.53004 * 109.47036 * 60.00013 * 5 3 2 8 8 C 1.52995 * 109.47171 * 179.97438 * 5 3 2 9 9 C 1.50694 * 109.47158 * 174.99731 * 8 5 3 10 10 C 1.38290 * 119.92239 * 90.00286 * 9 8 5 11 11 C 1.38106 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38916 * 119.92661 * 359.97438 * 11 10 9 13 13 N 1.39667 * 120.07376 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99755 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.47017 * 54.99771 * 15 14 13 17 17 C 1.53001 * 109.47242 * 295.00240 * 15 14 13 18 18 C 1.52994 * 109.47404 * 174.99693 * 15 14 13 19 19 C 1.50701 * 109.47248 * 184.99754 * 18 15 14 20 20 H 1.07997 * 120.00120 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99825 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00260 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99910 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46938 * 60.00454 * 23 21 19 25 25 H 1.48501 * 109.47358 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47398 * 300.00402 * 23 21 19 27 27 C 1.38907 * 119.84662 * 0.25973 * 12 11 10 28 28 C 1.38105 * 119.92856 * 359.48592 * 27 12 11 29 29 H 1.09000 * 109.47063 * 59.99778 * 1 2 3 30 30 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46863 * 300.00355 * 1 2 3 32 32 H 1.09001 * 109.47205 * 299.99934 * 7 5 3 33 33 H 1.08999 * 109.47459 * 59.99648 * 7 5 3 34 34 H 1.09004 * 109.46956 * 180.02562 * 7 5 3 35 35 H 1.09001 * 109.46721 * 55.00199 * 8 5 3 36 36 H 1.08999 * 109.47444 * 295.00229 * 8 5 3 37 37 H 1.08003 * 119.96494 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.03613 * 179.97438 * 11 10 9 39 39 H 0.96996 * 120.00638 * 0.02562 * 13 12 11 40 40 H 1.09002 * 109.47068 * 300.00057 * 14 13 12 41 41 H 1.09001 * 109.47372 * 60.00145 * 14 13 12 42 42 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 45 45 H 1.09001 * 109.47698 * 305.00111 * 18 15 14 46 46 H 1.09009 * 109.47010 * 65.00116 * 18 15 14 47 47 H 0.97000 * 120.00592 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.03753 * 179.72540 * 27 12 11 49 49 H 1.08000 * 119.96348 * 180.25439 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1139 0.5811 -1.2483 8 6 4.0002 2.7421 -0.0002 9 6 5.4998 2.8226 0.1243 10 6 6.2870 2.8290 -1.0127 11 6 7.6617 2.9032 -0.9023 12 6 8.2534 2.9719 0.3527 13 7 9.6433 3.0465 0.4679 14 6 10.2657 3.1183 1.7923 15 6 11.7862 3.1908 1.6380 16 1 12.0461 4.0276 0.9896 17 6 12.2988 1.8884 1.0199 18 6 12.4292 3.3911 3.0117 19 6 13.9146 3.5852 2.8475 20 1 14.3558 3.5678 1.8619 21 6 14.7102 3.7860 3.9556 22 7 14.1730 3.8077 5.1557 23 14 16.5514 4.0273 3.7521 24 1 16.8036 5.2227 2.9080 25 1 17.1756 4.2217 5.0854 26 1 17.1388 2.8288 3.1011 27 6 7.4599 2.9603 1.4927 28 6 6.0857 2.8912 1.3750 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.8048 -0.4642 -1.2483 33 1 3.7245 1.0749 -2.1386 34 1 5.2025 0.6377 -1.2477 35 1 3.5376 3.2581 0.8411 36 1 3.6871 3.2131 -0.9320 37 1 5.8263 2.7769 -1.9881 38 1 8.2759 2.9078 -1.7906 39 1 10.1966 3.0507 -0.3288 40 1 9.9102 4.0074 2.3131 41 1 10.0011 2.2306 2.3667 42 1 11.8407 1.7457 0.0413 43 1 13.3820 1.9399 0.9105 44 1 12.0388 1.0516 1.6683 45 1 11.9985 4.2710 3.4898 46 1 12.2437 2.5136 3.6312 47 1 14.7327 3.9486 5.9353 48 1 7.9170 3.0091 2.4701 49 1 5.4680 2.8863 2.2610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602619293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:37 Heat of formation + Delta-G solvation = -92.455377 kcal Electronic energy + Delta-G solvation = -25643.713340 eV Core-core repulsion = 21955.472976 eV Total energy + Delta-G solvation = -3688.240365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91823 -39.53643 -37.29556 -36.70815 -35.29077 -33.61004 -32.07284 -30.86346 -29.77449 -28.05230 -27.17521 -26.61905 -25.43720 -23.87574 -23.15709 -22.16658 -20.94692 -20.14252 -19.31377 -17.93392 -17.12768 -16.99096 -16.64259 -16.53086 -15.62342 -15.20407 -14.68958 -14.54577 -14.53285 -14.28573 -13.78074 -13.74251 -13.51241 -13.30415 -13.12361 -12.88125 -12.60911 -12.54050 -12.36521 -12.28292 -11.96482 -11.60105 -11.43069 -11.38675 -11.27926 -11.14477 -10.95196 -10.90724 -10.77794 -10.58971 -10.44457 -10.36839 -9.99138 -9.60761 -9.33134 -9.09065 -8.81636 -8.39463 -7.14483 -6.04054 -4.06206 1.54518 1.64711 1.90062 2.42456 3.30231 3.35277 3.36991 3.73124 3.93840 4.33475 4.42624 4.56736 4.66182 4.72926 4.80474 4.93920 4.99563 5.05676 5.13548 5.18518 5.31668 5.34598 5.48248 5.51104 5.51564 5.56329 5.65383 5.78019 5.81834 5.87776 5.89661 5.96660 6.07111 6.13091 6.17219 6.33546 6.38890 6.46478 6.52621 6.76845 6.79919 6.96594 6.98511 7.03886 7.42833 7.57342 7.58921 7.72542 7.94145 7.97199 8.36553 8.99170 9.57632 11.07221 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.001766 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.855507 B =15849.199909 C =16117.454484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.464 3.536 4 O -0.508 6.508 5 C -0.078 4.078 6 H 0.111 0.889 7 C -0.146 4.146 8 C -0.052 4.052 9 C -0.159 4.159 10 C -0.063 4.063 11 C -0.204 4.204 12 C 0.227 3.773 13 N -0.740 5.740 14 C 0.125 3.875 15 C -0.096 4.096 16 H 0.062 0.938 17 C -0.132 4.132 18 C 0.030 3.970 19 C -0.518 4.518 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.198 4.198 28 C -0.063 4.063 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.397 0.603 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.046 0.954 45 H 0.017 0.983 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.123 0.877 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 -7.252 -12.568 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.395 6.395 5 C -0.097 4.097 6 H 0.129 0.871 7 C -0.203 4.203 8 C -0.090 4.090 9 C -0.161 4.161 10 C -0.082 4.082 11 C -0.227 4.227 12 C 0.121 3.879 13 N -0.367 5.367 14 C 0.002 3.998 15 C -0.115 4.115 16 H 0.080 0.920 17 C -0.189 4.189 18 C -0.007 4.007 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.221 4.221 28 C -0.082 4.082 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.140 0.860 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.089 -6.927 -12.160 27.859 hybrid contribution 1.065 0.217 -0.204 1.106 sum -23.024 -6.710 -12.364 26.981 Atomic orbital electron populations 1.23263 0.76516 1.03666 1.02527 1.86528 1.23298 1.33689 1.84056 1.24035 0.92278 0.81184 0.71805 1.90665 1.67283 1.36379 1.45187 1.21131 0.86083 0.99727 1.02736 0.87138 1.21851 1.02850 1.00407 0.95224 1.20290 0.92169 0.92732 1.03774 1.19300 0.94090 1.09417 0.93325 1.20669 0.92719 0.97260 0.97539 1.20544 0.95048 1.11630 0.95491 1.17959 0.84244 0.92100 0.93636 1.45051 1.02585 1.80128 1.08913 1.21635 0.94413 1.00511 0.83248 1.21442 0.90922 0.97580 1.01578 0.91999 1.21719 1.01816 0.97322 0.98040 1.19074 0.95108 0.97209 0.89320 1.21152 0.92487 1.49214 0.92783 0.92618 1.25011 0.98619 0.95436 0.95350 1.69943 1.35613 1.49945 0.97869 0.86670 0.85534 0.78681 0.77179 1.20279 1.21303 1.20279 1.20694 0.93517 1.10370 0.97528 1.20741 0.94013 0.96867 0.96538 0.91957 0.88119 0.91903 0.91525 0.92273 0.90059 0.90527 0.90716 0.86606 0.86567 0.76789 0.92542 0.92596 0.95103 0.91774 0.93474 0.96450 0.96312 0.92918 0.85954 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.14 10.47 -39.28 -0.41 -3.55 16 3 C 0.46 4.54 7.26 36.01 0.26 4.80 16 4 O -0.51 -6.27 15.67 -18.75 -0.29 -6.56 16 5 C -0.08 -0.64 2.82 -91.77 -0.26 -0.90 16 6 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 7 C -0.15 -1.05 8.69 37.16 0.32 -0.72 16 8 C -0.05 -0.48 4.18 -27.89 -0.12 -0.60 16 9 C -0.16 -1.66 4.72 -104.59 -0.49 -2.15 16 10 C -0.06 -0.65 7.95 -39.61 -0.31 -0.97 16 11 C -0.20 -2.38 9.90 -39.38 -0.39 -2.77 16 12 C 0.23 3.04 6.65 -83.79 -0.56 2.48 16 13 N -0.74 -10.36 5.46 -58.63 -0.32 -10.68 16 14 C 0.13 2.04 4.30 -4.04 -0.02 2.02 16 15 C -0.10 -1.83 2.37 -90.62 -0.22 -2.04 16 16 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 17 C -0.13 -2.32 8.88 37.16 0.33 -1.99 16 18 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 19 C -0.52 -14.03 8.41 -34.44 -0.29 -14.32 16 20 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C -0.20 -2.62 9.31 -39.38 -0.37 -2.98 16 28 C -0.06 -0.72 9.69 -39.61 -0.38 -1.10 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.61 6.26 -51.93 -0.33 0.28 16 35 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.12 0.97 8.04 -52.48 -0.42 0.55 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.40 5.12 7.67 -40.82 -0.31 4.81 16 40 H 0.06 0.95 7.96 -51.93 -0.41 0.54 16 41 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 42 H 0.03 0.45 7.18 -51.93 -0.37 0.08 16 43 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 44 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.12 1.65 6.73 -52.49 -0.35 1.29 16 49 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -30.67 398.89 -9.32 -39.99 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.38 Total: 1.98 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -1.64 Total: -17.85 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.42 Total: -36.23 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.70 Total: -10.11 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.67 -9.32 -39.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602619293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.463 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds