Wall clock time and date at job start Tue Mar 31 2020 12:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34238 * 116.99946 * 2 1 4 4 O 1.20822 * 119.99753 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99893 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47055 * 300.00232 * 5 3 2 7 7 C 1.53004 * 109.47036 * 60.00013 * 5 3 2 8 8 C 1.52995 * 109.47171 * 179.97438 * 5 3 2 9 9 C 1.50694 * 109.47158 * 174.99731 * 8 5 3 10 10 C 1.38290 * 119.92239 * 90.00286 * 9 8 5 11 11 C 1.38106 * 120.07425 * 179.97438 * 10 9 8 12 12 C 1.38916 * 119.92661 * 359.97438 * 11 10 9 13 13 N 1.39667 * 120.07376 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99755 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.47017 * 54.99771 * 15 14 13 17 17 C 1.53001 * 109.47242 * 295.00240 * 15 14 13 18 18 C 1.52994 * 109.47404 * 174.99693 * 15 14 13 19 19 C 1.50701 * 109.47248 * 184.99754 * 18 15 14 20 20 H 1.07997 * 120.00120 * 0.02562 * 19 18 15 21 21 C 1.37881 * 119.99825 * 179.97438 * 19 18 15 22 22 N 1.31509 * 120.00260 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99910 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46938 * 60.00454 * 23 21 19 25 25 H 1.48501 * 109.47358 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47398 * 300.00402 * 23 21 19 27 27 C 1.38907 * 119.84662 * 0.25973 * 12 11 10 28 28 C 1.38105 * 119.92856 * 359.48592 * 27 12 11 29 29 H 1.09000 * 109.47063 * 59.99778 * 1 2 3 30 30 H 1.08994 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46863 * 300.00355 * 1 2 3 32 32 H 1.09001 * 109.47205 * 299.99934 * 7 5 3 33 33 H 1.08999 * 109.47459 * 59.99648 * 7 5 3 34 34 H 1.09004 * 109.46956 * 180.02562 * 7 5 3 35 35 H 1.09001 * 109.46721 * 55.00199 * 8 5 3 36 36 H 1.08999 * 109.47444 * 295.00229 * 8 5 3 37 37 H 1.08003 * 119.96494 * 0.02562 * 10 9 8 38 38 H 1.08001 * 120.03613 * 179.97438 * 11 10 9 39 39 H 0.96996 * 120.00638 * 0.02562 * 13 12 11 40 40 H 1.09002 * 109.47068 * 300.00057 * 14 13 12 41 41 H 1.09001 * 109.47372 * 60.00145 * 14 13 12 42 42 H 1.08998 * 109.47430 * 59.99652 * 17 15 14 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 15 14 44 44 H 1.09008 * 109.46731 * 299.99706 * 17 15 14 45 45 H 1.09001 * 109.47698 * 305.00111 * 18 15 14 46 46 H 1.09009 * 109.47010 * 65.00116 * 18 15 14 47 47 H 0.97000 * 120.00592 * 179.97438 * 22 21 19 48 48 H 1.08002 * 120.03753 * 179.72540 * 27 12 11 49 49 H 1.08000 * 119.96348 * 180.25439 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9557 0.7810 0.8907 7 6 4.1139 0.5811 -1.2483 8 6 4.0002 2.7421 -0.0002 9 6 5.4998 2.8226 0.1243 10 6 6.2870 2.8290 -1.0127 11 6 7.6617 2.9032 -0.9023 12 6 8.2534 2.9719 0.3527 13 7 9.6433 3.0465 0.4679 14 6 10.2657 3.1183 1.7923 15 6 11.7862 3.1908 1.6380 16 1 12.0461 4.0276 0.9896 17 6 12.2988 1.8884 1.0199 18 6 12.4292 3.3911 3.0117 19 6 13.9146 3.5852 2.8475 20 1 14.3558 3.5678 1.8619 21 6 14.7102 3.7860 3.9556 22 7 14.1730 3.8077 5.1557 23 14 16.5514 4.0273 3.7521 24 1 16.8036 5.2227 2.9080 25 1 17.1756 4.2217 5.0854 26 1 17.1388 2.8288 3.1011 27 6 7.4599 2.9603 1.4927 28 6 6.0857 2.8912 1.3750 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.8048 -0.4642 -1.2483 33 1 3.7245 1.0749 -2.1386 34 1 5.2025 0.6377 -1.2477 35 1 3.5376 3.2581 0.8411 36 1 3.6871 3.2131 -0.9320 37 1 5.8263 2.7769 -1.9881 38 1 8.2759 2.9078 -1.7906 39 1 10.1966 3.0507 -0.3288 40 1 9.9102 4.0074 2.3131 41 1 10.0011 2.2306 2.3667 42 1 11.8407 1.7457 0.0413 43 1 13.3820 1.9399 0.9105 44 1 12.0388 1.0516 1.6683 45 1 11.9985 4.2710 3.4898 46 1 12.2437 2.5136 3.6312 47 1 14.7327 3.9486 5.9353 48 1 7.9170 3.0091 2.4701 49 1 5.4680 2.8863 2.2610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602619293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:36 Heat of formation + Delta-G solvation = -107.313402 kcal Electronic energy + Delta-G solvation = -25644.357633 eV Core-core repulsion = 21955.472976 eV Total energy + Delta-G solvation = -3688.884657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65513 -40.46848 -38.39565 -37.61383 -36.38458 -35.01108 -33.75160 -31.77978 -30.75864 -28.94152 -28.54364 -27.76667 -26.56764 -24.93248 -24.51950 -23.25492 -21.87244 -20.90090 -20.84296 -18.66680 -18.53904 -18.10853 -17.75484 -17.32056 -16.79390 -16.47861 -16.08657 -15.95432 -15.41512 -15.04198 -14.76215 -14.74941 -14.50774 -14.27788 -14.16735 -14.02529 -13.95734 -13.69382 -13.35213 -13.18281 -13.14893 -12.85698 -12.77720 -12.65760 -12.28275 -12.20878 -12.14917 -12.07167 -12.02499 -11.78494 -11.64201 -11.61333 -11.34367 -11.15612 -11.03785 -10.69315 -10.53379 -9.71802 -8.17809 -8.16666 -6.27133 0.63851 0.73512 1.15905 1.41173 1.43252 1.50937 1.79197 2.41010 2.62397 3.03174 3.16088 3.66367 3.89846 3.98085 4.04459 4.13490 4.18643 4.20468 4.28206 4.33001 4.33176 4.38475 4.42635 4.59258 4.65651 4.71846 4.75221 4.77793 4.86529 4.91960 4.94541 4.99576 5.01601 5.18155 5.22353 5.26625 5.30347 5.32364 5.41117 5.45518 5.50802 5.54433 5.61228 5.76582 5.86046 5.89192 6.06825 6.26380 6.50355 6.71251 6.88034 6.96031 7.41278 8.93891 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.034186 B = 0.001766 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.855507 B =15849.199909 C =16117.454484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.539 6.539 5 C -0.075 4.075 6 H 0.118 0.882 7 C -0.142 4.142 8 C -0.047 4.047 9 C -0.150 4.150 10 C -0.060 4.060 11 C -0.203 4.203 12 C 0.206 3.794 13 N -0.739 5.739 14 C 0.144 3.856 15 C -0.085 4.085 16 H 0.062 0.938 17 C -0.124 4.124 18 C 0.034 3.966 19 C -0.532 4.532 20 H 0.063 0.937 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.267 1.267 27 C -0.217 4.217 28 C -0.069 4.069 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.404 0.596 40 H 0.044 0.956 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.040 0.960 45 H -0.011 1.011 46 H -0.006 1.006 47 H 0.262 0.738 48 H 0.110 0.890 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.550 -8.078 -14.869 29.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.428 6.428 5 C -0.094 4.094 6 H 0.136 0.864 7 C -0.199 4.199 8 C -0.085 4.085 9 C -0.152 4.152 10 C -0.079 4.079 11 C -0.225 4.225 12 C 0.102 3.898 13 N -0.368 5.368 14 C 0.019 3.981 15 C -0.104 4.104 16 H 0.081 0.919 17 C -0.181 4.181 18 C -0.004 4.004 19 C -0.570 4.570 20 H 0.081 0.919 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.786 3.214 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.192 1.192 27 C -0.240 4.240 28 C -0.088 4.088 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.240 0.760 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.008 0.992 46 H 0.012 0.988 47 H 0.071 0.929 48 H 0.128 0.872 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -24.659 -7.772 -14.492 29.639 hybrid contribution 1.066 0.448 0.506 1.262 sum -23.593 -7.324 -13.986 28.388 Atomic orbital electron populations 1.23531 0.75077 1.05611 1.02430 1.86518 1.24775 1.33039 1.83605 1.24267 0.92735 0.81022 0.70869 1.90654 1.68033 1.37350 1.46796 1.21125 0.85304 0.99175 1.03774 0.86449 1.21833 1.02647 1.00749 0.94693 1.20230 0.91108 0.93495 1.03652 1.19458 0.94758 1.07960 0.93017 1.20965 0.92260 0.96042 0.98620 1.20771 0.95784 1.10728 0.95236 1.18136 0.83749 0.93443 0.94500 1.44762 1.03052 1.81226 1.07795 1.21199 0.92553 0.99755 0.84610 1.21205 0.92454 0.98548 0.98213 0.91944 1.21626 1.00897 0.96000 0.99588 1.18959 0.94657 0.94750 0.92007 1.21598 0.93824 1.48439 0.93108 0.91871 1.25936 1.03659 0.95245 0.95046 1.70086 1.37393 1.51219 0.98710 0.85566 0.79578 0.79086 0.77207 1.19322 1.21200 1.19194 1.20759 0.94449 1.11566 0.97202 1.20917 0.93484 0.96732 0.97676 0.91952 0.85212 0.92167 0.90846 0.91702 0.90106 0.91234 0.90412 0.84048 0.84901 0.76014 0.93801 0.93141 0.91643 0.93344 0.94048 0.99220 0.98790 0.92942 0.87232 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.77 10.47 -51.49 -0.54 -6.31 16 3 C 0.47 8.52 7.26 71.24 0.52 9.04 16 4 O -0.54 -12.88 15.67 21.98 0.34 -12.54 16 5 C -0.07 -1.10 2.82 -11.54 -0.03 -1.13 16 6 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 7 C -0.14 -1.68 8.69 71.98 0.63 -1.05 16 8 C -0.05 -0.79 4.18 29.84 0.12 -0.67 16 9 C -0.15 -2.85 4.72 -19.84 -0.09 -2.94 16 10 C -0.06 -1.09 7.95 22.25 0.18 -0.91 16 11 C -0.20 -4.26 9.90 22.40 0.22 -4.04 16 12 C 0.21 5.31 6.65 38.22 0.25 5.57 16 13 N -0.74 -20.06 5.46 -339.41 -1.85 -21.92 16 14 C 0.14 4.74 4.30 86.38 0.37 5.11 16 15 C -0.09 -3.26 2.37 -10.80 -0.03 -3.29 16 16 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 17 C -0.12 -4.26 8.88 71.98 0.64 -3.62 16 18 C 0.03 1.72 4.45 29.85 0.13 1.85 16 19 C -0.53 -29.21 8.41 25.60 0.22 -28.99 16 20 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 21 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 22 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 23 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C -0.22 -5.70 9.31 22.40 0.21 -5.50 16 28 C -0.07 -1.53 9.69 22.25 0.22 -1.31 16 29 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 30 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 32 H 0.07 0.79 8.11 -2.39 -0.02 0.77 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.99 6.26 -2.38 -0.01 0.97 16 35 H 0.07 1.28 7.90 -2.39 -0.02 1.26 16 36 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 37 H 0.14 1.84 8.04 -2.91 -0.02 1.81 16 38 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 39 H 0.40 9.70 7.67 -92.71 -0.71 8.99 16 40 H 0.04 1.54 7.96 -2.39 -0.02 1.52 16 41 H 0.05 1.71 7.94 -2.39 -0.02 1.69 16 42 H 0.06 1.79 7.18 -2.39 -0.02 1.77 16 43 H 0.05 1.80 6.95 -2.39 -0.02 1.79 16 44 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.11 3.08 6.73 -2.91 -0.02 3.06 16 49 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -66.87 398.89 5.68 -61.19 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.21 Total: 19.86 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 5.21 Total: -30.02 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.57 Total: -77.90 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.19 Total: -18.84 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.87 5.68 -61.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602619293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.123 kcal (2) G-P(sol) polarization free energy of solvation -66.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds