Wall clock time and date at job start Tue Mar 31 2020 12:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99339 * 2 1 4 4 O 1.20823 * 120.00324 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99613 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47118 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47119 * 299.99863 * 5 3 2 8 8 N 1.46898 * 109.46764 * 300.00038 * 7 5 3 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.46897 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47465 * 305.00164 * 10 9 8 12 12 C 1.53002 * 109.47069 * 65.00435 * 10 9 8 13 13 C 1.53003 * 109.47015 * 184.99888 * 10 9 8 14 14 C 1.50696 * 109.47457 * 174.99954 * 13 10 9 15 15 H 1.08002 * 119.99737 * 0.02562 * 14 13 10 16 16 C 1.37872 * 120.00193 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00141 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00249 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47343 * 89.99428 * 18 16 14 20 20 H 1.48496 * 109.47340 * 209.99961 * 18 16 14 21 21 H 1.48512 * 109.46789 * 329.99690 * 18 16 14 22 22 C 1.50699 * 109.47213 * 59.99462 * 5 3 2 23 23 C 1.38233 * 120.00379 * 239.72447 * 22 5 3 24 24 C 1.38235 * 120.00178 * 179.79130 * 23 22 5 25 25 C 1.38232 * 119.99933 * 0.44035 * 24 23 22 26 26 C 1.38244 * 120.00042 * 359.81329 * 25 24 23 27 27 C 1.38231 * 119.99870 * 359.97438 * 26 25 24 28 28 H 1.09000 * 109.46762 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47294 * 299.99919 * 1 2 3 30 30 H 1.08995 * 109.47168 * 60.00333 * 1 2 3 31 31 H 1.09004 * 109.47373 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47373 * 300.00031 * 6 5 3 33 33 H 1.09006 * 109.47006 * 60.00132 * 6 5 3 34 34 H 1.08995 * 109.47210 * 179.97438 * 7 5 3 35 35 H 1.08997 * 109.46954 * 59.99975 * 7 5 3 36 36 H 1.00902 * 111.00533 * 56.04323 * 8 7 5 37 37 H 1.09000 * 109.47033 * 300.00113 * 9 8 7 38 38 H 1.09001 * 109.46544 * 60.00058 * 9 8 7 39 39 H 1.09000 * 109.47048 * 299.99452 * 12 10 9 40 40 H 1.08994 * 109.47199 * 59.99565 * 12 10 9 41 41 H 1.09001 * 109.46743 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.47422 * 295.00404 * 13 10 9 43 43 H 1.09005 * 109.46949 * 55.00013 * 13 10 9 44 44 H 0.97003 * 120.00432 * 180.02562 * 17 16 14 45 45 H 1.08001 * 119.99417 * 0.02562 * 23 22 5 46 46 H 1.08001 * 119.99902 * 180.28257 * 24 23 22 47 47 H 1.07992 * 120.00067 * 179.83710 * 25 24 23 48 48 H 1.07991 * 119.99779 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.00177 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 6 4.1138 0.5812 1.2484 8 7 3.5890 1.2470 2.4481 9 6 4.0942 0.6058 3.6695 10 6 3.5277 1.3256 4.8950 11 1 3.7622 2.3882 4.8330 12 6 2.0096 1.1400 4.9388 13 6 4.1499 0.7391 6.1638 14 6 3.6864 1.5276 7.3614 15 1 3.0147 2.3632 7.2307 16 6 4.1188 1.1816 8.6240 17 7 3.7139 1.8695 9.6692 18 14 5.2799 -0.2641 8.8502 19 1 6.6843 0.2116 8.7697 20 1 5.0432 -0.8861 10.1776 21 1 5.0351 -1.2672 7.7828 22 6 4.1046 0.5921 -1.2313 23 6 4.9617 -0.4851 -1.1050 24 6 5.4521 -1.1143 -2.2340 25 6 5.0927 -0.6606 -3.4893 26 6 4.2397 0.4200 -3.6156 27 6 3.7458 1.0464 -2.4867 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 5.0885 2.7994 -0.0011 32 1 3.6099 3.2362 -0.8910 33 1 3.6105 3.2365 0.8890 34 1 5.2023 0.6379 1.2477 35 1 3.8048 -0.4640 1.2483 36 1 2.5802 1.2643 2.4400 37 1 3.7847 -0.4392 3.6860 38 1 5.1826 0.6628 3.6860 39 1 1.5662 1.5578 4.0349 40 1 1.7751 0.0774 5.0008 41 1 1.6060 1.6524 5.8121 42 1 3.8421 -0.3010 6.2722 43 1 5.2364 0.7909 6.0930 44 1 4.0184 1.6263 10.5575 45 1 5.2451 -0.8375 -0.1242 46 1 6.1181 -1.9587 -2.1352 47 1 5.4779 -1.1504 -4.3712 48 1 3.9592 0.7747 -4.5963 49 1 3.0798 1.8907 -2.5853 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602627981.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:54 Heat of formation + Delta-G solvation = -73.958654 kcal Electronic energy + Delta-G solvation = -27368.090613 eV Core-core repulsion = 23680.652326 eV Total energy + Delta-G solvation = -3687.438286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25138 -39.45241 -37.47109 -36.68170 -35.45897 -33.18174 -31.79508 -31.24992 -29.64706 -28.19545 -27.63693 -26.47686 -24.97081 -23.99645 -22.62089 -22.26165 -21.69549 -19.89801 -19.02690 -17.90195 -17.35790 -16.89559 -16.66268 -16.48320 -15.62754 -15.19344 -15.08087 -14.80349 -14.20784 -14.16618 -13.95948 -13.68462 -13.40221 -13.27433 -13.15586 -12.70057 -12.63272 -12.49489 -12.25617 -12.16784 -12.00503 -11.95507 -11.78272 -11.63078 -11.23277 -11.02012 -10.97538 -10.96208 -10.68934 -10.50583 -10.39900 -9.90846 -9.66348 -9.46000 -9.21472 -9.05360 -9.04481 -8.50490 -8.31228 -6.00587 -3.97579 0.98849 1.10478 2.01645 2.51423 3.32131 3.39535 3.42676 3.47776 3.96137 4.35962 4.47779 4.49137 4.59477 4.69873 4.75112 4.83902 4.89548 4.92625 4.99887 5.17789 5.27292 5.32157 5.32820 5.39770 5.50143 5.60085 5.64267 5.68286 5.71904 5.75537 5.80404 5.93882 6.11527 6.11862 6.17212 6.21489 6.26466 6.29188 6.35431 6.44554 6.67379 6.74254 6.96474 7.04766 7.15012 7.30074 7.39007 7.52468 7.57555 7.83783 8.58828 9.05277 9.62150 11.12865 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018009 B = 0.002849 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.440292 B = 9827.074893 C =10595.211329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.471 3.529 4 O -0.495 6.495 5 C -0.006 4.006 6 C -0.121 4.121 7 C 0.065 3.935 8 N -0.686 5.686 9 C 0.062 3.938 10 C -0.075 4.075 11 H 0.073 0.927 12 C -0.136 4.136 13 C -0.008 4.008 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.267 1.267 22 C -0.072 4.072 23 C -0.107 4.107 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.111 4.111 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.336 0.664 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.014 0.986 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -6.359 -28.361 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.381 6.381 5 C -0.007 4.007 6 C -0.178 4.178 7 C -0.064 4.064 8 N -0.318 5.318 9 C -0.066 4.066 10 C -0.094 4.094 11 H 0.091 0.909 12 C -0.193 4.193 13 C -0.046 4.046 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.073 4.073 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.129 4.129 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.155 0.845 37 H 0.044 0.956 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.072 0.928 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.145 -5.566 -28.157 28.702 hybrid contribution -0.166 -1.556 0.255 1.585 sum -0.020 -7.121 -27.902 28.796 Atomic orbital electron populations 1.23297 0.76339 1.03763 1.02654 1.86537 1.23355 1.33322 1.83895 1.23555 0.91464 0.81468 0.72222 1.90676 1.66725 1.36235 1.44451 1.19540 0.86812 0.99627 0.94746 1.21694 1.01685 0.90621 1.03821 1.22116 1.00993 0.95409 0.87920 1.60608 1.14023 1.55853 1.01359 1.22188 0.99968 0.95462 0.88981 1.21032 0.94935 1.00339 0.93126 0.90899 1.21748 0.96382 1.00524 1.00655 1.19599 0.95416 0.96367 0.93191 1.21130 1.28940 1.15339 0.89645 0.90821 1.25030 0.96133 0.96385 0.96068 1.69916 1.45381 1.40462 0.98686 0.86802 0.81635 0.83595 0.77359 1.20358 1.21537 1.19123 1.19421 0.98448 0.96440 0.92949 1.21185 0.96900 0.94959 0.99420 1.21169 0.99990 0.99892 0.92414 1.21193 0.98076 0.96924 0.97565 1.21099 0.97797 0.96305 0.98325 1.21009 1.00091 0.99875 0.91961 0.88104 0.91564 0.91990 0.91104 0.92317 0.89550 0.89049 0.93731 0.84487 0.95560 0.91099 0.94967 0.94070 0.91214 0.96805 0.97061 0.92842 0.85195 0.85766 0.86035 0.85949 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.35 -4.23 10.39 -39.26 -0.41 -4.64 16 3 C 0.47 6.04 5.00 36.01 0.18 6.22 16 4 O -0.49 -7.38 15.73 -18.75 -0.29 -7.68 16 5 C -0.01 -0.06 0.62 -156.81 -0.10 -0.16 16 6 C -0.12 -1.36 7.42 37.16 0.28 -1.09 16 7 C 0.07 0.76 3.25 -3.82 -0.01 0.74 16 8 N -0.69 -9.71 5.72 -113.78 -0.65 -10.36 16 9 C 0.06 1.00 5.14 -3.82 -0.02 0.98 16 10 C -0.08 -1.48 2.55 -90.62 -0.23 -1.71 16 11 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 12 C -0.14 -2.54 8.77 37.16 0.33 -2.22 16 13 C -0.01 -0.19 3.52 -27.88 -0.10 -0.28 16 14 C -0.51 -14.48 8.96 -34.44 -0.31 -14.79 16 15 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 16 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.91 -28.04 13.96 55.43 0.77 -27.26 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 22 C -0.07 -0.73 4.69 -104.62 -0.49 -1.22 16 23 C -0.11 -0.98 8.98 -39.58 -0.36 -1.34 16 24 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.11 -1.06 8.82 -39.58 -0.35 -1.41 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.63 7.34 -51.93 -0.38 0.25 16 33 H 0.09 1.13 7.56 -51.93 -0.39 0.73 16 34 H 0.09 0.97 7.50 -51.93 -0.39 0.58 16 35 H 0.04 0.51 7.50 -51.93 -0.39 0.12 16 36 H 0.34 4.97 5.86 -39.29 -0.23 4.74 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.46 6.95 -51.93 -0.36 1.10 16 42 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.13 1.08 5.89 -52.49 -0.31 0.77 16 46 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 49 H 0.12 1.12 7.57 -52.49 -0.40 0.72 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -32.24 390.42 -8.93 -41.17 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.16 Total: 2.89 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -1.40 Total: -17.11 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.12 Total: -37.62 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.70 Total: -12.32 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.24 -8.93 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602627981.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.788 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds