Wall clock time and date at job start Tue Mar 31 2020 13:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 117.00015 * 2 1 4 4 C 1.38758 * 120.05506 * 0.02821 * 3 2 1 5 5 C 1.38125 * 119.94392 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05573 * 359.97438 * 5 4 3 7 7 C 1.38249 * 120.11173 * 359.75092 * 6 5 4 8 8 C 1.38172 * 120.05319 * 0.50416 * 7 6 5 9 9 C 1.50703 * 120.02554 * 179.77253 * 8 7 6 10 10 H 1.09001 * 109.46590 * 179.72562 * 9 8 7 11 11 C 1.52996 * 109.47069 * 59.72199 * 9 8 7 12 12 C 1.53003 * 109.46861 * 299.71986 * 9 8 7 13 13 C 1.50697 * 109.46624 * 184.99985 * 12 9 8 14 14 O 1.21283 * 120.00521 * 359.73045 * 13 12 9 15 15 N 1.34784 * 119.99774 * 180.02562 * 13 12 9 16 16 C 1.46499 * 119.99893 * 179.72962 * 15 13 12 17 17 C 1.50697 * 109.47293 * 90.00297 * 16 15 13 18 18 H 1.07997 * 120.00010 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00242 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99879 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46938 * 90.00404 * 21 19 17 23 23 H 1.48499 * 109.47143 * 210.00686 * 21 19 17 24 24 H 1.48496 * 109.47136 * 330.00589 * 21 19 17 25 25 C 1.46499 * 119.99971 * 359.72768 * 15 13 12 26 26 C 1.52996 * 109.47349 * 119.99826 * 25 15 13 27 27 C 1.52998 * 109.47194 * 240.00124 * 25 15 13 28 28 H 1.09002 * 109.47101 * 299.99917 * 1 2 3 29 29 H 1.08994 * 109.47351 * 59.99447 * 1 2 3 30 30 H 1.09001 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.02999 * 359.95398 * 4 3 2 32 32 H 1.08000 * 119.97543 * 179.97438 * 5 4 3 33 33 H 1.07997 * 119.94795 * 179.97438 * 6 5 4 34 34 H 1.07996 * 119.97648 * 180.25457 * 7 6 5 35 35 H 1.09003 * 109.46558 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47378 * 299.99709 * 11 9 8 37 37 H 1.08997 * 109.47158 * 60.00599 * 11 9 8 38 38 H 1.09001 * 109.46782 * 65.00882 * 12 9 8 39 39 H 1.08993 * 109.47555 * 305.00439 * 12 9 8 40 40 H 1.08997 * 109.46865 * 210.00034 * 16 15 13 41 41 H 1.08998 * 109.47058 * 329.99547 * 16 15 13 42 42 H 0.96997 * 120.00230 * 179.97438 * 20 19 17 43 43 H 1.09004 * 109.46973 * 359.97438 * 25 15 13 44 44 H 1.08998 * 109.47017 * 59.99612 * 26 25 15 45 45 H 1.08996 * 109.47637 * 180.02562 * 26 25 15 46 46 H 1.09009 * 109.47102 * 300.00533 * 26 25 15 47 47 H 1.08998 * 109.47156 * 60.00056 * 27 25 15 48 48 H 1.09005 * 109.46870 * 179.97438 * 27 25 15 49 49 H 1.09004 * 109.47239 * 299.99932 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 4.0560 2.5171 0.0068 8 6 3.4311 1.2848 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.5910 -0.8433 0.0012 11 6 5.1360 -0.0113 1.2508 12 6 5.1368 -0.0116 -1.2477 13 6 5.8676 -1.3281 -1.3107 14 8 5.7025 -2.1557 -0.4396 15 7 6.7092 -1.5834 -2.3320 16 6 7.4241 -2.8608 -2.3902 17 6 6.5977 -3.8648 -3.1517 18 1 5.6360 -3.5800 -3.5520 19 6 7.0690 -5.1472 -3.3366 20 7 6.3476 -6.0236 -4.0008 21 14 8.7323 -5.6400 -2.6436 22 1 8.5579 -6.1687 -1.2668 23 1 9.3359 -6.6891 -3.5040 24 1 9.6252 -4.4540 -2.6090 25 6 6.9090 -0.5836 -3.3840 26 6 8.3840 -0.1797 -3.4302 27 6 6.4996 -1.1751 -4.7342 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2128 2.3204 0.0003 32 1 1.3340 4.5114 0.0012 33 1 3.7922 4.6380 0.0016 34 1 5.1344 2.5751 0.0113 35 1 5.7307 -0.9248 1.2513 36 1 5.7987 0.8540 1.2510 37 1 4.5069 0.0126 2.1406 38 1 5.8594 0.8033 -1.2038 39 1 4.5149 0.1016 -2.1356 40 1 8.3799 -2.7195 -2.8947 41 1 7.5981 -3.2262 -1.3781 42 1 6.6793 -6.9257 -4.1311 43 1 6.2982 0.2940 -3.1719 44 1 8.9945 -1.0574 -3.6424 45 1 8.5327 0.5645 -4.2126 46 1 8.6757 0.2417 -2.4681 47 1 5.4488 -1.4628 -4.7013 48 1 6.6479 -0.4310 -5.5169 49 1 7.1101 -2.0528 -4.9465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609129321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:45 Heat of formation + Delta-G solvation = -56.424795 kcal Electronic energy + Delta-G solvation = -27817.896046 eV Core-core repulsion = 24131.218084 eV Total energy + Delta-G solvation = -3686.677961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.47397 -39.29481 -37.57480 -36.19947 -34.74960 -32.68428 -30.93633 -30.25636 -30.07028 -28.67360 -27.29770 -26.82058 -26.61158 -23.71849 -22.33636 -22.08806 -21.29264 -20.03130 -18.13984 -17.82228 -16.89525 -16.79855 -16.23779 -15.80940 -15.51714 -15.11357 -14.83628 -14.51869 -14.25715 -13.84662 -13.65203 -13.50206 -13.28574 -13.12042 -12.70488 -12.61009 -12.41818 -12.29023 -12.08120 -11.84932 -11.76826 -11.65800 -11.53977 -11.29958 -11.20531 -10.98722 -10.91100 -10.78914 -10.54658 -10.50845 -10.39781 -10.21810 -10.03881 -9.39061 -8.95374 -8.77829 -8.52254 -8.19110 -7.60729 -6.02415 -3.99200 1.22920 1.36443 3.22713 3.32380 3.38291 3.40636 3.46302 3.65621 3.90711 4.44696 4.62267 4.70004 4.88920 4.95198 5.02222 5.12015 5.15433 5.24271 5.30288 5.33435 5.37467 5.38379 5.41781 5.54840 5.55469 5.67263 5.68384 5.81885 5.95019 5.99693 6.01844 6.13431 6.19873 6.23693 6.26938 6.34055 6.36778 6.41614 6.57531 6.69171 6.70466 6.72172 6.84927 7.03123 7.05549 7.34177 7.47545 7.69273 8.38312 8.55303 9.01929 9.11178 9.58828 11.10963 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016278 B = 0.003497 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.673992 B = 8005.495316 C = 8615.458979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.090 4.090 6 C -0.158 4.158 7 C -0.079 4.079 8 C -0.100 4.100 9 C -0.031 4.031 10 H 0.095 0.905 11 C -0.145 4.145 12 C -0.130 4.130 13 C 0.509 3.491 14 O -0.537 6.537 15 N -0.590 5.590 16 C 0.215 3.785 17 C -0.519 4.519 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.873 3.127 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.133 3.867 26 C -0.162 4.162 27 C -0.157 4.157 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.263 0.737 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 20.958 5.785 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.108 4.108 6 C -0.176 4.176 7 C -0.097 4.097 8 C -0.100 4.100 9 C -0.050 4.050 10 H 0.113 0.887 11 C -0.202 4.202 12 C -0.170 4.170 13 C 0.296 3.704 14 O -0.415 6.415 15 N -0.322 5.322 16 C 0.095 3.905 17 C -0.557 4.557 18 H 0.094 0.906 19 C -0.131 4.131 20 N -0.538 5.538 21 Si 0.700 3.300 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.192 1.192 25 C 0.029 3.971 26 C -0.220 4.220 27 C -0.214 4.214 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.641 20.109 6.174 22.059 hybrid contribution 0.440 -0.176 0.103 0.485 sum -6.201 19.933 6.277 21.798 Atomic orbital electron populations 1.23056 0.78638 1.04102 1.00954 1.86163 1.21061 1.26553 1.88364 1.18902 0.91921 0.84301 0.96378 1.21199 0.99850 0.92410 1.09328 1.20871 0.94707 0.96753 0.98434 1.21016 0.93884 0.98272 1.04416 1.20887 0.99996 0.91007 0.97762 1.19389 0.90403 0.96010 1.04241 1.19733 0.95891 0.94837 0.94513 0.88682 1.21941 0.99307 1.02908 0.96057 1.21753 0.99077 0.96652 0.99518 1.20325 0.79761 0.88415 0.81897 1.90628 1.63711 1.48471 1.38659 1.48029 1.43879 1.17804 1.22459 1.19590 0.92274 0.80924 0.97744 1.21357 1.05714 0.94709 1.33957 0.90581 1.24851 0.97129 0.96254 0.94860 1.69894 1.37760 1.04731 1.41452 0.86905 0.84830 0.78712 0.79559 1.20022 1.21238 1.19150 1.21021 0.96121 0.90940 0.89065 1.22169 0.96829 1.01730 1.01301 1.22133 1.02947 1.01581 0.94786 0.92891 0.92781 0.88121 0.85698 0.86158 0.86110 0.85423 0.89874 0.93599 0.93267 0.89761 0.89522 0.95294 0.94826 0.92720 0.90402 0.91659 0.92098 0.92908 0.92481 0.93332 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.21 9.26 -19.42 -0.18 -4.39 16 3 C 0.13 1.70 6.66 -39.22 -0.26 1.44 16 4 C -0.21 -2.22 9.04 -39.43 -0.36 -2.58 16 5 C -0.09 -0.85 10.04 -39.60 -0.40 -1.25 16 6 C -0.16 -1.53 10.04 -39.56 -0.40 -1.92 16 7 C -0.08 -0.87 8.76 -39.60 -0.35 -1.21 16 8 C -0.10 -1.32 4.79 -104.47 -0.50 -1.82 16 9 C -0.03 -0.47 2.17 -91.77 -0.20 -0.67 16 10 H 0.09 1.73 6.81 -51.93 -0.35 1.37 16 11 C -0.15 -2.14 8.74 37.16 0.32 -1.81 16 12 C -0.13 -1.99 3.23 -27.88 -0.09 -2.08 16 13 C 0.51 10.39 7.39 -10.98 -0.08 10.31 16 14 O -0.54 -13.05 13.54 5.56 0.08 -12.97 16 15 N -0.59 -12.11 2.39 -167.48 -0.40 -12.51 16 16 C 0.22 5.25 3.66 -5.20 -0.02 5.23 16 17 C -0.52 -14.75 8.38 -34.44 -0.29 -15.03 16 18 H 0.08 2.37 7.87 -52.49 -0.41 1.96 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 21 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.13 2.14 3.17 -67.93 -0.22 1.93 16 26 C -0.16 -2.26 9.17 37.16 0.34 -1.92 16 27 C -0.16 -2.67 8.47 37.16 0.31 -2.36 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.03 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.13 1.22 7.16 -52.49 -0.38 0.84 16 35 H 0.08 1.46 5.94 -51.93 -0.31 1.15 16 36 H 0.04 0.57 7.37 -51.93 -0.38 0.19 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.07 7.24 -51.93 -0.38 0.69 16 39 H 0.09 1.29 7.78 -51.93 -0.40 0.89 16 40 H 0.03 0.68 5.49 -51.93 -0.28 0.39 16 41 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.08 1.06 5.77 -51.93 -0.30 0.76 16 44 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.08 1.62 6.92 -51.93 -0.36 1.26 16 LS Contribution 383.15 15.07 5.77 5.77 Total: -1.00 -34.12 383.15 -7.84 -41.96 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.93 Total: 2.64 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.28 Total: -10.55 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.37 Total: -39.55 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.10 Total: -17.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.12 -7.84 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609129321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.468 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds