Wall clock time and date at job start Tue Mar 31 2020 12:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.28907 * 2 1 4 4 C 1.54263 * 110.32442 * 237.87755 * 2 1 3 5 5 C 1.54383 * 105.06361 * 241.00414 * 4 2 1 6 6 H 1.08997 * 110.41076 * 94.92173 * 5 4 2 7 7 C 1.52995 * 110.51167 * 217.31927 * 5 4 2 8 8 N 1.48565 * 104.58799 * 336.14660 * 5 4 2 9 9 C 1.46903 * 110.99404 * 159.04130 * 8 5 4 10 10 C 1.53008 * 109.46774 * 169.99504 * 9 8 5 11 11 H 1.09004 * 109.46544 * 60.00044 * 10 9 8 12 12 O 1.42895 * 109.46966 * 300.00098 * 10 9 8 13 13 C 1.52997 * 109.46869 * 179.97438 * 10 9 8 14 14 O 1.42902 * 109.47045 * 185.00167 * 13 10 9 15 15 C 1.35672 * 116.99991 * 180.02562 * 14 13 10 16 16 C 1.39309 * 119.81787 * 359.72355 * 15 14 13 17 17 C 1.36438 * 120.18460 * 179.76167 * 16 15 14 18 18 C 1.40836 * 119.80840 * 0.51104 * 17 16 15 19 19 C 1.41220 * 120.17759 * 179.76185 * 18 17 16 20 20 H 1.07996 * 119.99684 * 24.54315 * 19 18 17 21 21 C 1.39890 * 120.00191 * 204.53987 * 19 18 17 22 22 N 1.30883 * 119.99733 * 17.93809 * 21 19 18 23 23 Si 1.86801 * 120.00159 * 197.94362 * 21 19 18 24 24 H 1.48493 * 109.47294 * 59.99636 * 23 21 19 25 25 H 1.48496 * 109.46883 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46746 * 299.99837 * 23 21 19 27 27 C 1.40830 * 119.64273 * 359.74687 * 18 17 16 28 28 C 1.36429 * 119.81280 * 359.97438 * 27 18 17 29 29 C 1.48551 * 104.22677 * 39.48363 * 8 5 4 30 30 H 1.09003 * 109.46967 * 182.12114 * 1 2 3 31 31 H 1.09002 * 109.46851 * 302.12240 * 1 2 3 32 32 H 1.09006 * 109.46762 * 62.12455 * 1 2 3 33 33 H 1.08999 * 110.32619 * 122.10479 * 4 2 1 34 34 H 1.09007 * 110.32416 * 359.89631 * 4 2 1 35 35 H 1.08998 * 109.47099 * 175.23163 * 7 5 4 36 36 H 1.09008 * 109.46533 * 295.22688 * 7 5 4 37 37 H 1.08993 * 109.47572 * 55.22609 * 7 5 4 38 38 H 1.09001 * 109.47077 * 50.00002 * 9 8 5 39 39 H 1.08994 * 109.47229 * 289.99428 * 9 8 5 40 40 H 0.96700 * 114.00209 * 299.99532 * 12 10 9 41 41 H 1.09002 * 109.46852 * 65.00244 * 13 10 9 42 42 H 1.08995 * 109.47344 * 305.00198 * 13 10 9 43 43 H 1.08002 * 119.90765 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.09818 * 180.25927 * 17 16 15 45 45 H 0.97003 * 119.99999 * 179.97438 * 22 21 19 46 46 H 1.08009 * 120.09127 * 179.97438 * 27 18 17 47 47 H 1.08003 * 119.90902 * 180.02562 * 28 27 18 48 48 H 1.09000 * 110.41274 * 79.29402 * 29 8 5 49 49 H 1.08996 * 110.41486 * 201.74038 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0659 -0.7692 -1.2251 5 6 2.8829 -1.9401 -0.6379 6 1 2.2683 -2.8380 -0.5739 7 6 4.1267 -2.2055 -1.4883 8 7 3.2721 -1.4807 0.7203 9 6 3.6119 -2.6195 1.5838 10 6 4.2415 -2.1062 2.8805 11 1 3.5333 -1.4577 3.3962 12 8 5.4271 -1.3694 2.5752 13 6 4.5948 -3.2922 3.7801 14 8 5.0746 -2.8103 5.0370 15 6 5.4345 -3.7407 5.9566 16 6 5.3208 -5.0954 5.6525 17 6 5.6852 -6.0373 6.5699 18 6 6.1672 -5.6366 7.8311 19 6 6.5418 -6.6049 8.7883 20 1 6.8421 -7.5919 8.4689 21 6 6.5240 -6.2857 10.1502 22 7 5.8460 -5.2479 10.5702 23 14 7.4680 -7.3403 11.3692 24 1 8.9107 -7.3321 11.0176 25 1 7.2896 -6.7941 12.7384 26 1 6.9546 -8.7329 11.3204 27 6 6.2739 -4.2650 8.1324 28 6 5.9107 -3.3359 7.2017 29 6 2.0685 -0.7708 1.2244 30 1 -0.3633 -1.0270 0.0380 31 1 -0.3633 0.5465 0.8704 32 1 -0.3633 0.4805 -0.9085 33 1 2.7068 -0.1244 -1.8264 34 1 1.2388 -1.1483 -1.8255 35 1 4.7337 -2.9763 -1.0135 36 1 3.8237 -2.5413 -2.4801 37 1 4.7086 -1.2883 -1.5772 38 1 4.3201 -3.2680 1.0680 39 1 2.7075 -3.1815 1.8167 40 1 6.1031 -1.8851 2.1145 41 1 5.3685 -3.8930 3.3020 42 1 3.7070 -3.9039 3.9404 43 1 4.9472 -5.4009 4.6863 44 1 5.6004 -7.0872 6.3312 45 1 5.8333 -5.0268 11.5146 46 1 6.6422 -3.9496 9.0975 47 1 5.9923 -2.2836 7.4310 48 1 1.3265 -1.4858 1.5799 49 1 2.3414 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610144709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:16 Heat of formation + Delta-G solvation = -76.577389 kcal Electronic energy + Delta-G solvation = -26377.237061 eV Core-core repulsion = 22689.685218 eV Total energy + Delta-G solvation = -3687.551843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.87904 -38.86046 -37.23435 -35.96427 -33.68064 -33.30566 -32.16750 -30.28596 -29.43797 -28.92374 -27.27467 -26.05090 -24.90190 -24.13940 -21.92508 -20.78589 -20.70165 -20.52372 -20.04720 -17.35145 -17.17825 -16.43102 -16.22235 -15.98506 -15.49774 -15.22172 -14.77345 -14.65228 -14.16496 -13.96161 -13.85405 -13.52728 -13.28018 -13.03053 -12.83875 -12.76271 -12.32980 -12.23440 -12.16413 -12.07277 -11.79011 -11.74466 -11.37739 -11.33443 -11.13520 -11.10645 -10.94085 -10.83685 -10.78266 -10.69594 -10.58739 -9.98403 -9.84803 -9.82586 -9.32246 -9.00934 -8.67183 -7.63632 -7.02271 -6.71610 -4.24843 2.79680 2.95798 3.08272 3.10663 3.22997 3.44807 3.95432 4.06867 4.24057 4.38030 4.53069 4.62988 4.66604 4.79786 4.90089 5.02297 5.04904 5.10032 5.20874 5.24300 5.27809 5.34931 5.39035 5.42146 5.49347 5.50694 5.63537 5.65247 5.68039 5.69717 5.76700 5.91128 5.97899 6.00347 6.06558 6.07622 6.23749 6.64239 6.72467 6.78846 6.98448 7.11892 7.19290 7.47332 7.56465 7.79641 7.81623 8.01058 8.21239 8.46358 8.66121 8.90471 8.99576 10.22822 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.002032 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.288039 B =13773.292333 C =14029.841307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.056 3.944 6 H 0.049 0.951 7 C -0.136 4.136 8 N -0.492 5.492 9 C 0.015 3.985 10 C 0.120 3.880 11 H 0.102 0.898 12 O -0.538 6.538 13 C 0.038 3.962 14 O -0.317 6.317 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.133 4.133 28 C -0.119 4.119 29 C 0.034 3.966 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.369 0.631 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.126 0.874 47 H 0.098 0.902 48 H 0.045 0.955 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.514 6.878 -20.090 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.053 4.053 6 H 0.067 0.933 7 C -0.194 4.194 8 N -0.216 5.216 9 C -0.114 4.114 10 C 0.060 3.940 11 H 0.120 0.880 12 O -0.341 6.341 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.153 4.153 28 C -0.138 4.138 29 C -0.094 4.094 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.215 0.785 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.144 0.856 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.433 8.016 -19.552 22.400 hybrid contribution -0.231 -1.929 0.376 1.979 sum -7.665 6.087 -19.175 21.529 Atomic orbital electron populations 1.21874 0.94710 1.01763 1.01892 1.21873 0.95340 1.00029 0.94394 0.90173 1.22448 0.99021 0.96580 0.97277 1.22664 0.95996 0.96619 0.89985 0.93317 1.21715 0.96994 1.02240 0.98427 1.65287 1.33017 1.22100 1.01235 1.22909 1.00575 0.93028 0.94910 1.21773 0.88007 0.92685 0.91523 0.88043 1.86633 1.26928 1.40520 1.80057 1.23124 0.98705 0.96411 0.85683 1.85890 1.81085 1.33747 1.22519 1.18627 1.08988 0.87053 0.90511 1.20387 1.06795 0.92384 0.99141 1.20553 1.08103 0.96905 0.96326 1.17593 0.89709 0.92663 0.91477 1.19421 1.40359 0.99195 0.90427 0.90611 1.25882 0.93446 0.95312 0.99584 1.69828 1.30678 1.24840 1.17141 0.86377 0.81030 0.80580 0.78762 1.18883 1.20393 1.19124 1.20984 1.03118 0.92442 0.98729 1.19847 1.03706 0.98620 0.91615 1.23264 0.90874 0.97649 0.97617 0.92788 0.92410 0.92461 0.90886 0.91384 0.92714 0.92465 0.91631 0.90154 0.93471 0.78479 0.92966 0.92684 0.89013 0.88794 0.90862 0.85650 0.88419 0.93711 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.92 37.16 0.33 -0.62 16 2 C -0.10 -0.77 3.65 -89.23 -0.33 -1.09 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -0.86 6.20 -25.35 -0.16 -1.01 16 5 C 0.06 0.47 2.87 -66.07 -0.19 0.28 16 6 H 0.05 0.41 8.00 -51.93 -0.42 0.00 16 7 C -0.14 -1.04 9.37 37.15 0.35 -0.69 16 8 N -0.49 -5.00 4.89 -222.14 -1.09 -6.09 16 9 C 0.01 0.15 4.44 -3.82 -0.02 0.14 16 10 C 0.12 1.58 3.31 -26.73 -0.09 1.50 16 11 H 0.10 1.44 7.47 -51.93 -0.39 1.05 16 12 O -0.54 -7.71 13.17 -40.05 -0.53 -8.23 16 13 C 0.04 0.60 4.37 37.16 0.16 0.76 16 14 O -0.32 -6.64 10.09 -23.54 -0.24 -6.87 16 15 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 16 C -0.17 -3.84 8.96 -39.83 -0.36 -4.19 16 17 C -0.20 -4.94 9.74 -39.25 -0.38 -5.32 16 18 C 0.09 2.37 5.57 -106.80 -0.60 1.78 16 19 C -0.46 -12.40 9.04 -37.83 -0.34 -12.74 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 21 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 22 N -0.80 -20.85 10.96 55.54 0.61 -20.24 16 23 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 28 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 29 C 0.03 0.32 5.46 -2.19 -0.01 0.31 16 30 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.53 7.83 -51.93 -0.41 0.13 16 34 H 0.07 0.44 7.71 -51.92 -0.40 0.04 16 35 H 0.05 0.43 7.27 -51.93 -0.38 0.05 16 36 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.08 0.76 7.15 -51.93 -0.37 0.39 16 39 H 0.05 0.47 7.77 -51.93 -0.40 0.07 16 40 H 0.37 4.10 9.05 45.56 0.41 4.51 16 41 H 0.05 0.77 7.66 -51.93 -0.40 0.37 16 42 H 0.06 0.83 7.64 -51.93 -0.40 0.44 16 43 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 44 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 45 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 46 H 0.13 3.39 6.16 -52.48 -0.32 3.07 16 47 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 48 H 0.04 0.42 7.44 -51.93 -0.39 0.03 16 49 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -29.64 388.67 -10.64 -40.28 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.52 Total: 8.32 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -2.71 Total: -26.79 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: -0.48 Total: -26.33 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.76 Total: -15.11 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.64 -10.64 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610144709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.294 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds