Wall clock time and date at job start Tue Mar 31 2020 12:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.28907 * 2 1 4 4 C 1.54263 * 110.32442 * 237.87755 * 2 1 3 5 5 C 1.54383 * 105.06361 * 241.00414 * 4 2 1 6 6 H 1.08997 * 110.41076 * 94.92173 * 5 4 2 7 7 C 1.52995 * 110.51167 * 217.31927 * 5 4 2 8 8 N 1.48565 * 104.58799 * 336.14660 * 5 4 2 9 9 C 1.46903 * 110.99404 * 159.04130 * 8 5 4 10 10 C 1.53008 * 109.46774 * 169.99504 * 9 8 5 11 11 H 1.09004 * 109.46544 * 60.00044 * 10 9 8 12 12 O 1.42895 * 109.46966 * 300.00098 * 10 9 8 13 13 C 1.52997 * 109.46869 * 179.97438 * 10 9 8 14 14 O 1.42902 * 109.47045 * 185.00167 * 13 10 9 15 15 C 1.35672 * 116.99991 * 180.02562 * 14 13 10 16 16 C 1.39309 * 119.81787 * 359.72355 * 15 14 13 17 17 C 1.36438 * 120.18460 * 179.76167 * 16 15 14 18 18 C 1.40836 * 119.80840 * 0.51104 * 17 16 15 19 19 C 1.41220 * 120.17759 * 179.76185 * 18 17 16 20 20 H 1.07996 * 119.99684 * 24.54315 * 19 18 17 21 21 C 1.39890 * 120.00191 * 204.53987 * 19 18 17 22 22 N 1.30883 * 119.99733 * 17.93809 * 21 19 18 23 23 Si 1.86801 * 120.00159 * 197.94362 * 21 19 18 24 24 H 1.48493 * 109.47294 * 59.99636 * 23 21 19 25 25 H 1.48496 * 109.46883 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46746 * 299.99837 * 23 21 19 27 27 C 1.40830 * 119.64273 * 359.74687 * 18 17 16 28 28 C 1.36429 * 119.81280 * 359.97438 * 27 18 17 29 29 C 1.48551 * 104.22677 * 39.48363 * 8 5 4 30 30 H 1.09003 * 109.46967 * 182.12114 * 1 2 3 31 31 H 1.09002 * 109.46851 * 302.12240 * 1 2 3 32 32 H 1.09006 * 109.46762 * 62.12455 * 1 2 3 33 33 H 1.08999 * 110.32619 * 122.10479 * 4 2 1 34 34 H 1.09007 * 110.32416 * 359.89631 * 4 2 1 35 35 H 1.08998 * 109.47099 * 175.23163 * 7 5 4 36 36 H 1.09008 * 109.46533 * 295.22688 * 7 5 4 37 37 H 1.08993 * 109.47572 * 55.22609 * 7 5 4 38 38 H 1.09001 * 109.47077 * 50.00002 * 9 8 5 39 39 H 1.08994 * 109.47229 * 289.99428 * 9 8 5 40 40 H 0.96700 * 114.00209 * 299.99532 * 12 10 9 41 41 H 1.09002 * 109.46852 * 65.00244 * 13 10 9 42 42 H 1.08995 * 109.47344 * 305.00198 * 13 10 9 43 43 H 1.08002 * 119.90765 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.09818 * 180.25927 * 17 16 15 45 45 H 0.97003 * 119.99999 * 179.97438 * 22 21 19 46 46 H 1.08009 * 120.09127 * 179.97438 * 27 18 17 47 47 H 1.08003 * 119.90902 * 180.02562 * 28 27 18 48 48 H 1.09000 * 110.41274 * 79.29402 * 29 8 5 49 49 H 1.08996 * 110.41486 * 201.74038 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0659 -0.7692 -1.2251 5 6 2.8829 -1.9401 -0.6379 6 1 2.2683 -2.8380 -0.5739 7 6 4.1267 -2.2055 -1.4883 8 7 3.2721 -1.4807 0.7203 9 6 3.6119 -2.6195 1.5838 10 6 4.2415 -2.1062 2.8805 11 1 3.5333 -1.4577 3.3962 12 8 5.4271 -1.3694 2.5752 13 6 4.5948 -3.2922 3.7801 14 8 5.0746 -2.8103 5.0370 15 6 5.4345 -3.7407 5.9566 16 6 5.3208 -5.0954 5.6525 17 6 5.6852 -6.0373 6.5699 18 6 6.1672 -5.6366 7.8311 19 6 6.5418 -6.6049 8.7883 20 1 6.8421 -7.5919 8.4689 21 6 6.5240 -6.2857 10.1502 22 7 5.8460 -5.2479 10.5702 23 14 7.4680 -7.3403 11.3692 24 1 8.9107 -7.3321 11.0176 25 1 7.2896 -6.7941 12.7384 26 1 6.9546 -8.7329 11.3204 27 6 6.2739 -4.2650 8.1324 28 6 5.9107 -3.3359 7.2017 29 6 2.0685 -0.7708 1.2244 30 1 -0.3633 -1.0270 0.0380 31 1 -0.3633 0.5465 0.8704 32 1 -0.3633 0.4805 -0.9085 33 1 2.7068 -0.1244 -1.8264 34 1 1.2388 -1.1483 -1.8255 35 1 4.7337 -2.9763 -1.0135 36 1 3.8237 -2.5413 -2.4801 37 1 4.7086 -1.2883 -1.5772 38 1 4.3201 -3.2680 1.0680 39 1 2.7075 -3.1815 1.8167 40 1 6.1031 -1.8851 2.1145 41 1 5.3685 -3.8930 3.3020 42 1 3.7070 -3.9039 3.9404 43 1 4.9472 -5.4009 4.6863 44 1 5.6004 -7.0872 6.3312 45 1 5.8333 -5.0268 11.5146 46 1 6.6422 -3.9496 9.0975 47 1 5.9923 -2.2836 7.4310 48 1 1.3265 -1.4858 1.5799 49 1 2.3414 -0.0776 2.0200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610144709.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:15 Heat of formation + Delta-G solvation = -94.769675 kcal Electronic energy + Delta-G solvation = -26378.025938 eV Core-core repulsion = 22689.685218 eV Total energy + Delta-G solvation = -3688.340720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82827 -40.31633 -38.63496 -37.47478 -35.18760 -34.40661 -32.90346 -31.87382 -31.07108 -30.53534 -28.01518 -26.99951 -26.44694 -25.24300 -23.20167 -22.47925 -22.19947 -21.39665 -20.75304 -19.25937 -18.73888 -17.65605 -17.36453 -17.05301 -16.68879 -16.32560 -15.97670 -15.73867 -15.70313 -15.37539 -14.99478 -14.69983 -14.34733 -14.08568 -14.02028 -13.93114 -13.63466 -13.54438 -13.36455 -13.06436 -12.89776 -12.83577 -12.78701 -12.62472 -12.42850 -12.37344 -12.11025 -11.84289 -11.76368 -11.68034 -11.59862 -11.41309 -11.36334 -11.21347 -10.91601 -10.87595 -9.57514 -9.42558 -8.93600 -8.60129 -6.23392 0.94507 1.01612 1.39451 1.50566 1.54658 2.22363 2.34851 2.72007 3.05168 3.51091 3.60190 3.68326 3.69491 3.90379 3.96683 4.04061 4.14613 4.17242 4.27336 4.29521 4.35291 4.42301 4.44189 4.48651 4.57221 4.63068 4.75186 4.78870 4.84867 4.87378 4.90829 4.97712 5.04252 5.06325 5.11510 5.20676 5.22048 5.27505 5.31491 5.39183 5.41710 5.57511 5.63454 5.87397 5.93371 6.04277 6.04997 6.25352 6.55726 6.79369 6.88434 6.94252 7.09343 8.36378 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032691 B = 0.002032 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.288039 B =13773.292333 C =14029.841307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.112 4.112 5 C 0.054 3.946 6 H 0.052 0.948 7 C -0.133 4.133 8 N -0.506 5.506 9 C 0.024 3.976 10 C 0.130 3.870 11 H 0.087 0.913 12 O -0.557 6.557 13 C 0.031 3.969 14 O -0.332 6.332 15 C -0.001 4.001 16 C -0.164 4.164 17 C -0.208 4.208 18 C 0.055 3.945 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.153 4.153 28 C -0.135 4.135 29 C 0.031 3.969 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.382 0.618 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.129 0.871 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.046 0.954 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 6.082 -21.880 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.093 0.907 4 C -0.150 4.150 5 C -0.054 4.054 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.231 5.231 9 C -0.104 4.104 10 C 0.070 3.930 11 H 0.105 0.895 12 O -0.363 6.363 13 C -0.046 4.046 14 O -0.248 6.248 15 C -0.045 4.045 16 C -0.183 4.183 17 C -0.228 4.228 18 C 0.052 3.948 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.804 3.196 24 H -0.186 1.186 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.172 4.172 28 C -0.154 4.154 29 C -0.097 4.097 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.231 0.769 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.125 0.875 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.064 0.936 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.924 7.226 -21.376 23.916 hybrid contribution -0.139 -1.575 0.778 1.762 sum -8.063 5.651 -20.599 22.831 Atomic orbital electron populations 1.21840 0.93633 1.01945 1.02408 1.21862 0.96211 0.99525 0.93902 0.90735 1.22451 0.99336 0.96160 0.97039 1.22743 0.96534 0.97070 0.89034 0.92972 1.21699 0.96503 1.01780 0.99082 1.65258 1.33524 1.22225 1.02050 1.22770 1.00929 0.93195 0.93556 1.21678 0.87575 0.91414 0.92364 0.89524 1.86599 1.27763 1.41521 1.80402 1.23494 0.99376 0.97956 0.83729 1.85883 1.81002 1.33813 1.24060 1.18696 1.07420 0.87830 0.90505 1.20689 1.05665 0.91672 1.00242 1.20812 1.07824 0.98119 0.96020 1.17960 0.90902 0.93030 0.92868 1.19689 1.42092 0.99489 0.91583 0.90457 1.26769 0.93725 0.96639 1.01067 1.69890 1.31571 1.26381 1.17976 0.85238 0.79271 0.78814 0.76281 1.18554 1.19377 1.18292 1.20901 1.04653 0.92967 0.98727 1.20011 1.04121 0.98824 0.92397 1.23267 0.90863 0.97574 0.97976 0.92672 0.92580 0.91358 0.90786 0.89999 0.92889 0.90963 0.92473 0.88803 0.92756 0.76932 0.91407 0.91646 0.85340 0.87493 0.90198 0.87235 0.87658 0.93553 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.92 71.98 0.64 -0.98 16 2 C -0.10 -1.39 3.65 -9.90 -0.04 -1.42 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.11 -1.43 6.20 31.49 0.20 -1.23 16 5 C 0.05 0.79 2.87 45.06 0.13 0.92 16 6 H 0.05 0.75 8.00 -2.39 -0.02 0.73 16 7 C -0.13 -1.74 9.37 71.98 0.67 -1.07 16 8 N -0.51 -9.50 4.89 -856.72 -4.19 -13.69 16 9 C 0.02 0.46 4.44 86.31 0.38 0.84 16 10 C 0.13 3.24 3.31 30.60 0.10 3.35 16 11 H 0.09 2.43 7.47 -2.38 -0.02 2.41 16 12 O -0.56 -15.32 13.17 -144.37 -1.90 -17.22 16 13 C 0.03 0.90 4.37 71.98 0.31 1.21 16 14 O -0.33 -13.55 10.09 -85.28 -0.86 -14.41 16 15 C 0.00 -0.03 6.71 22.79 0.15 0.12 16 16 C -0.16 -7.24 8.96 22.11 0.20 -7.05 16 17 C -0.21 -10.26 9.74 22.49 0.22 -10.04 16 18 C 0.05 3.01 5.57 -21.28 -0.12 2.89 16 19 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16 20 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 21 C 0.03 1.63 5.13 85.23 0.44 2.07 16 22 N -0.83 -44.43 10.96 21.82 0.24 -44.19 16 23 Si 0.98 38.67 29.60 68.60 2.03 40.70 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 27 C -0.15 -8.38 8.64 22.48 0.19 -8.19 16 28 C -0.13 -6.80 9.92 22.11 0.22 -6.58 16 29 C 0.03 0.57 5.46 86.45 0.47 1.04 16 30 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.94 7.83 -2.39 -0.02 0.92 16 34 H 0.08 0.83 7.71 -2.38 -0.02 0.81 16 35 H 0.05 0.71 7.27 -2.39 -0.02 0.69 16 36 H 0.07 0.72 8.14 -2.38 -0.02 0.71 16 37 H 0.06 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.09 1.50 7.15 -2.39 -0.02 1.49 16 39 H 0.05 0.95 7.77 -2.39 -0.02 0.93 16 40 H 0.38 7.89 9.05 -74.06 -0.67 7.22 16 41 H 0.07 1.79 7.66 -2.39 -0.02 1.78 16 42 H 0.07 1.80 7.64 -2.39 -0.02 1.78 16 43 H 0.13 4.63 6.27 -2.91 -0.02 4.61 16 44 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 45 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 46 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 47 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 48 H 0.05 0.82 7.44 -2.39 -0.02 0.80 16 49 H 0.07 1.43 7.85 -2.39 -0.02 1.41 16 Total: -1.00 -64.38 388.67 -0.03 -64.40 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.26 Total: 35.51 kcal Atomic # 6 Polarization: -55.49 SS G_CDS: 4.39 Total: -51.10 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -3.95 Total: -57.88 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -2.76 Total: -31.63 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -64.38 -0.03 -64.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610144709.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.365 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds