Wall clock time and date at job start Tue Mar 31 2020 12:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 110.27628 * 2 1 4 4 C 1.54594 * 110.30971 * 237.91084 * 2 1 3 5 5 C 1.55103 * 102.84574 * 219.18327 * 4 2 1 6 6 H 1.08994 * 110.59706 * 278.87318 * 5 4 2 7 7 C 1.53004 * 110.82607 * 155.84513 * 5 4 2 8 8 N 1.48533 * 103.28255 * 37.30942 * 5 4 2 9 9 C 1.46898 * 110.99805 * 200.33354 * 8 5 4 10 10 C 1.53004 * 109.47166 * 184.03075 * 9 8 5 11 11 H 1.09000 * 109.47361 * 53.94963 * 10 9 8 12 12 O 1.42903 * 109.46980 * 293.95246 * 10 9 8 13 13 C 1.53002 * 109.47063 * 173.95308 * 10 9 8 14 14 O 1.42900 * 109.47010 * 185.00115 * 13 10 9 15 15 C 1.35673 * 117.00247 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81719 * 359.71688 * 15 14 13 17 17 C 1.36435 * 120.18791 * 179.76044 * 16 15 14 18 18 C 1.40830 * 119.80792 * 0.51920 * 17 16 15 19 19 C 1.41221 * 120.17895 * 179.71616 * 18 17 16 20 20 H 1.08001 * 120.00073 * 205.42913 * 19 18 17 21 21 C 1.39889 * 119.99573 * 25.43204 * 19 18 17 22 22 N 1.30874 * 120.00617 * 16.71335 * 21 19 18 23 23 Si 1.86807 * 119.99428 * 196.71163 * 21 19 18 24 24 H 1.48497 * 109.47079 * 60.00108 * 23 21 19 25 25 H 1.48504 * 109.46786 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47069 * 299.99890 * 23 21 19 27 27 C 1.40835 * 119.64555 * 359.73975 * 18 17 16 28 28 C 1.36439 * 119.80930 * 359.97438 * 27 18 17 29 29 C 1.47905 * 105.82037 * 320.84457 * 8 5 4 30 30 H 1.08999 * 109.47198 * 300.69818 * 1 2 3 31 31 H 1.08998 * 109.47351 * 180.70084 * 1 2 3 32 32 H 1.08998 * 109.47190 * 60.70290 * 1 2 3 33 33 H 1.09003 * 110.72485 * 337.48113 * 4 2 1 34 34 H 1.09002 * 110.72450 * 100.76888 * 4 2 1 35 35 H 1.08989 * 109.47691 * 306.03299 * 7 5 4 36 36 H 1.09002 * 109.46989 * 66.03721 * 7 5 4 37 37 H 1.09003 * 109.47040 * 186.03129 * 7 5 4 38 38 H 1.09004 * 109.47409 * 304.03020 * 9 8 5 39 39 H 1.09001 * 109.47655 * 64.02652 * 9 8 5 40 40 H 0.96703 * 113.99546 * 299.99848 * 12 10 9 41 41 H 1.08997 * 109.47185 * 304.99739 * 13 10 9 42 42 H 1.08996 * 109.46971 * 65.00012 * 13 10 9 43 43 H 1.08002 * 119.90431 * 0.03248 * 16 15 14 44 44 H 1.07997 * 120.09762 * 180.25668 * 17 16 15 45 45 H 0.96995 * 120.00535 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.09637 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.91046 * 179.97438 * 28 27 18 48 48 H 1.09004 * 109.91399 * 265.98411 * 29 8 5 49 49 H 1.09000 * 109.91750 * 144.68640 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0665 -0.7702 -1.2283 5 6 3.2855 -1.5353 -0.6501 6 1 4.1563 -0.8823 -0.5933 7 6 3.5970 -2.7761 -1.4893 8 7 2.8313 -1.9229 0.7099 9 6 3.9751 -2.2247 1.5809 10 6 3.4672 -2.7154 2.9382 11 1 2.7830 -3.5509 2.7897 12 8 2.7828 -1.6518 3.6035 13 6 4.6522 -3.1719 3.7915 14 8 4.1704 -3.7376 5.0121 15 6 5.0999 -4.1944 5.8885 16 6 6.4536 -4.1033 5.5726 17 6 7.3950 -4.5558 6.4504 18 6 6.9942 -5.1261 7.6741 19 6 7.9617 -5.6025 8.5859 20 1 7.7025 -6.3766 9.2930 21 6 9.2559 -5.0715 8.5733 22 7 9.4913 -3.9354 7.9678 23 14 10.6481 -5.9842 9.4209 24 1 10.8053 -7.3273 8.8073 25 1 11.9101 -5.2172 9.2647 26 1 10.3355 -6.1332 10.8649 27 6 5.6235 -5.2194 7.9835 28 6 4.6951 -4.7568 7.0971 29 6 2.0644 -0.7672 1.2236 30 1 -0.3633 0.5246 0.8836 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3633 0.5029 -0.8962 33 1 1.3172 -1.4668 -1.6043 34 1 2.3790 -0.0787 -2.0108 35 1 2.7001 -3.3890 -1.5786 36 1 3.9279 -2.4698 -2.4817 37 1 4.3849 -3.3535 -1.0057 38 1 4.5879 -2.9998 1.1204 39 1 4.5730 -1.3241 1.7206 40 1 3.3321 -0.8734 3.7688 41 1 5.2259 -3.9208 3.2456 42 1 5.2903 -2.3167 4.0143 43 1 6.7590 -3.6692 4.6319 44 1 8.4442 -4.4806 6.2058 45 1 10.3886 -3.5671 7.9594 46 1 5.3080 -5.6559 8.9196 47 1 3.6434 -4.8279 7.3324 48 1 2.7162 -0.1209 1.8115 49 1 1.2326 -1.1160 1.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610144712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:25 Heat of formation + Delta-G solvation = -77.259498 kcal Electronic energy + Delta-G solvation = -26528.855155 eV Core-core repulsion = 22841.273734 eV Total energy + Delta-G solvation = -3687.581422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.92099 -38.83509 -37.25483 -35.99299 -33.68157 -33.32860 -31.96170 -30.27164 -29.61590 -28.91693 -27.23205 -25.94918 -24.85274 -24.07535 -21.97521 -20.95153 -20.68014 -20.25357 -20.07491 -17.35759 -17.13016 -16.71423 -16.31666 -16.11923 -15.20258 -15.09513 -14.65257 -14.47030 -14.05955 -14.01189 -13.93032 -13.55924 -13.27893 -13.19159 -12.77304 -12.58943 -12.41689 -12.29663 -12.03364 -11.94086 -11.79360 -11.73956 -11.44101 -11.34588 -11.10123 -11.02740 -10.94185 -10.85480 -10.77280 -10.73562 -10.58685 -9.91925 -9.87211 -9.75792 -9.35605 -9.01741 -8.61459 -7.65526 -6.99794 -6.71953 -4.25429 2.78017 2.96737 3.07153 3.10232 3.22302 3.50244 3.95084 4.06268 4.30250 4.42226 4.44713 4.62334 4.63579 4.92071 4.98022 5.00070 5.10912 5.12639 5.18777 5.33274 5.35669 5.37805 5.38707 5.48564 5.60616 5.65086 5.66654 5.67523 5.68773 5.75573 5.88250 5.99599 6.01268 6.08662 6.10275 6.15358 6.29160 6.71501 6.74953 6.84965 6.89371 7.06976 7.28395 7.41057 7.56202 7.65439 7.90536 8.00292 8.15779 8.45095 8.65342 8.90464 8.99470 10.23018 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.002156 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.006702 B =12985.162748 C =13497.367300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.057 3.943 6 H 0.050 0.950 7 C -0.137 4.137 8 N -0.506 5.506 9 C 0.019 3.981 10 C 0.117 3.883 11 H 0.113 0.887 12 O -0.548 6.548 13 C 0.040 3.960 14 O -0.318 6.318 15 C -0.008 4.008 16 C -0.176 4.176 17 C -0.133 4.133 18 C 0.086 3.914 19 C -0.463 4.463 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.803 5.803 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.280 1.280 26 H -0.266 1.266 27 C -0.195 4.195 28 C -0.113 4.113 29 C 0.050 3.950 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.367 0.633 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.279 0.721 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.043 0.957 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 7.586 -17.561 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.051 4.051 6 H 0.068 0.932 7 C -0.194 4.194 8 N -0.231 5.231 9 C -0.110 4.110 10 C 0.057 3.943 11 H 0.131 0.869 12 O -0.352 6.352 13 C -0.037 4.037 14 O -0.233 6.233 15 C -0.051 4.051 16 C -0.195 4.195 17 C -0.152 4.152 18 C 0.084 3.916 19 C -0.494 4.494 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.429 5.429 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.205 1.205 26 H -0.191 1.191 27 C -0.214 4.214 28 C -0.132 4.132 29 C -0.077 4.077 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.214 0.786 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.139 0.861 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.061 0.939 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.512 6.856 -17.607 21.622 hybrid contribution 2.189 0.881 0.390 2.392 sum -8.322 7.737 -17.218 20.629 Atomic orbital electron populations 1.21803 0.94354 1.02181 1.01407 1.22074 0.96621 0.98966 0.95168 0.91155 1.22647 0.97140 0.98522 0.96886 1.22820 0.96529 0.96057 0.89676 0.93194 1.21685 1.02108 0.97079 0.98564 1.64682 1.20162 1.36885 1.01342 1.22866 0.92844 1.00851 0.94459 1.21889 0.93872 0.90569 0.87971 0.86877 1.86670 1.41043 1.27273 1.80243 1.23092 0.96268 0.97878 0.86487 1.85865 1.33836 1.76260 1.27379 1.18605 0.87194 1.07014 0.92299 1.20598 0.92332 1.06467 1.00057 1.20937 0.98593 1.02378 0.93324 1.17598 0.91400 0.90782 0.91796 1.19434 0.94381 1.19186 1.16357 0.90539 1.25870 0.99987 0.93857 0.94507 1.69819 1.22860 1.14757 1.35501 0.86374 0.79514 0.80460 0.80377 1.18916 1.20459 1.19063 1.20616 0.93153 1.08643 0.99019 1.19626 0.98190 1.02634 0.92741 1.22988 0.98561 0.90506 0.95666 0.92585 0.92150 0.92941 0.90505 0.91376 0.91738 0.92416 0.92588 0.89523 0.94209 0.78592 0.92401 0.93078 0.88959 0.86135 0.90998 0.88183 0.88458 0.93892 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.88 37.15 0.33 -0.71 16 2 C -0.11 -0.88 3.58 -89.27 -0.32 -1.20 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.87 6.07 -24.78 -0.15 -1.02 16 5 C 0.06 0.50 2.91 -65.69 -0.19 0.31 16 6 H 0.05 0.44 8.02 -51.93 -0.42 0.02 16 7 C -0.14 -1.09 9.51 37.16 0.35 -0.73 16 8 N -0.51 -5.21 4.98 -222.51 -1.11 -6.32 16 9 C 0.02 0.20 4.51 -3.82 -0.02 0.18 16 10 C 0.12 1.52 3.41 -26.73 -0.09 1.43 16 11 H 0.11 1.63 8.14 -51.93 -0.42 1.20 16 12 O -0.55 -7.32 10.67 -40.08 -0.43 -7.75 16 13 C 0.04 0.63 4.36 37.16 0.16 0.79 16 14 O -0.32 -6.60 10.09 -23.57 -0.24 -6.84 16 15 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 16 C -0.18 -4.14 8.96 -39.83 -0.36 -4.50 16 17 C -0.13 -3.47 8.63 -39.25 -0.34 -3.81 16 18 C 0.09 2.33 5.57 -106.80 -0.59 1.73 16 19 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 20 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 21 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 22 N -0.80 -20.87 10.94 55.54 0.61 -20.26 16 23 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 27 C -0.19 -4.86 9.74 -39.25 -0.38 -5.25 16 28 C -0.11 -2.69 9.92 -39.83 -0.40 -3.08 16 29 C 0.05 0.50 4.72 -2.75 -0.01 0.48 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.54 8.12 -51.94 -0.42 0.12 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.46 7.33 -51.93 -0.38 0.08 16 38 H 0.09 0.87 7.27 -51.93 -0.38 0.50 16 39 H 0.04 0.40 7.91 -51.93 -0.41 -0.02 16 40 H 0.37 3.86 8.65 45.56 0.39 4.26 16 41 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 42 H 0.05 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 44 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 45 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 47 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 48 H 0.04 0.42 6.71 -51.93 -0.35 0.07 16 49 H 0.09 1.03 7.19 -51.93 -0.37 0.66 16 LS Contribution 385.28 15.07 5.81 5.81 Total: -1.00 -29.10 385.28 -10.63 -39.73 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.54 Total: 8.64 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: -2.70 Total: -26.76 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: -0.50 Total: -26.58 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.67 Total: -14.59 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.10 -10.63 -39.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610144712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.530 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds