Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 110.27628 * 2 1 4 4 C 1.54594 * 110.30971 * 237.91084 * 2 1 3 5 5 C 1.55103 * 102.84574 * 219.18327 * 4 2 1 6 6 H 1.08994 * 110.59706 * 278.87318 * 5 4 2 7 7 C 1.53004 * 110.82607 * 155.84513 * 5 4 2 8 8 N 1.48533 * 103.28255 * 37.30942 * 5 4 2 9 9 C 1.46898 * 110.99805 * 200.33354 * 8 5 4 10 10 C 1.53004 * 109.47166 * 184.03075 * 9 8 5 11 11 H 1.09000 * 109.47361 * 53.94963 * 10 9 8 12 12 O 1.42903 * 109.46980 * 293.95246 * 10 9 8 13 13 C 1.53002 * 109.47063 * 173.95308 * 10 9 8 14 14 O 1.42900 * 109.47010 * 185.00115 * 13 10 9 15 15 C 1.35673 * 117.00247 * 180.02562 * 14 13 10 16 16 C 1.39314 * 119.81719 * 359.71688 * 15 14 13 17 17 C 1.36435 * 120.18791 * 179.76044 * 16 15 14 18 18 C 1.40830 * 119.80792 * 0.51920 * 17 16 15 19 19 C 1.41221 * 120.17895 * 179.71616 * 18 17 16 20 20 H 1.08001 * 120.00073 * 205.42913 * 19 18 17 21 21 C 1.39889 * 119.99573 * 25.43204 * 19 18 17 22 22 N 1.30874 * 120.00617 * 16.71335 * 21 19 18 23 23 Si 1.86807 * 119.99428 * 196.71163 * 21 19 18 24 24 H 1.48497 * 109.47079 * 60.00108 * 23 21 19 25 25 H 1.48504 * 109.46786 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47069 * 299.99890 * 23 21 19 27 27 C 1.40835 * 119.64555 * 359.73975 * 18 17 16 28 28 C 1.36439 * 119.80930 * 359.97438 * 27 18 17 29 29 C 1.47905 * 105.82037 * 320.84457 * 8 5 4 30 30 H 1.08999 * 109.47198 * 300.69818 * 1 2 3 31 31 H 1.08998 * 109.47351 * 180.70084 * 1 2 3 32 32 H 1.08998 * 109.47190 * 60.70290 * 1 2 3 33 33 H 1.09003 * 110.72485 * 337.48113 * 4 2 1 34 34 H 1.09002 * 110.72450 * 100.76888 * 4 2 1 35 35 H 1.08989 * 109.47691 * 306.03299 * 7 5 4 36 36 H 1.09002 * 109.46989 * 66.03721 * 7 5 4 37 37 H 1.09003 * 109.47040 * 186.03129 * 7 5 4 38 38 H 1.09004 * 109.47409 * 304.03020 * 9 8 5 39 39 H 1.09001 * 109.47655 * 64.02652 * 9 8 5 40 40 H 0.96703 * 113.99546 * 299.99848 * 12 10 9 41 41 H 1.08997 * 109.47185 * 304.99739 * 13 10 9 42 42 H 1.08996 * 109.46971 * 65.00012 * 13 10 9 43 43 H 1.08002 * 119.90431 * 0.03248 * 16 15 14 44 44 H 1.07997 * 120.09762 * 180.25668 * 17 16 15 45 45 H 0.96995 * 120.00535 * 179.97438 * 22 21 19 46 46 H 1.07994 * 120.09637 * 179.97438 * 27 18 17 47 47 H 1.08001 * 119.91046 * 179.97438 * 28 27 18 48 48 H 1.09004 * 109.91399 * 265.98411 * 29 8 5 49 49 H 1.09000 * 109.91750 * 144.68640 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0665 -0.7702 -1.2283 5 6 3.2855 -1.5353 -0.6501 6 1 4.1563 -0.8823 -0.5933 7 6 3.5970 -2.7761 -1.4893 8 7 2.8313 -1.9229 0.7099 9 6 3.9751 -2.2247 1.5809 10 6 3.4672 -2.7154 2.9382 11 1 2.7830 -3.5509 2.7897 12 8 2.7828 -1.6518 3.6035 13 6 4.6522 -3.1719 3.7915 14 8 4.1704 -3.7376 5.0121 15 6 5.0999 -4.1944 5.8885 16 6 6.4536 -4.1033 5.5726 17 6 7.3950 -4.5558 6.4504 18 6 6.9942 -5.1261 7.6741 19 6 7.9617 -5.6025 8.5859 20 1 7.7025 -6.3766 9.2930 21 6 9.2559 -5.0715 8.5733 22 7 9.4913 -3.9354 7.9678 23 14 10.6481 -5.9842 9.4209 24 1 10.8053 -7.3273 8.8073 25 1 11.9101 -5.2172 9.2647 26 1 10.3355 -6.1332 10.8649 27 6 5.6235 -5.2194 7.9835 28 6 4.6951 -4.7568 7.0971 29 6 2.0644 -0.7672 1.2236 30 1 -0.3633 0.5246 0.8836 31 1 -0.3634 -1.0276 0.0126 32 1 -0.3633 0.5029 -0.8962 33 1 1.3172 -1.4668 -1.6043 34 1 2.3790 -0.0787 -2.0108 35 1 2.7001 -3.3890 -1.5786 36 1 3.9279 -2.4698 -2.4817 37 1 4.3849 -3.3535 -1.0057 38 1 4.5879 -2.9998 1.1204 39 1 4.5730 -1.3241 1.7206 40 1 3.3321 -0.8734 3.7688 41 1 5.2259 -3.9208 3.2456 42 1 5.2903 -2.3167 4.0143 43 1 6.7590 -3.6692 4.6319 44 1 8.4442 -4.4806 6.2058 45 1 10.3886 -3.5671 7.9594 46 1 5.3080 -5.6559 8.9196 47 1 3.6434 -4.8279 7.3324 48 1 2.7162 -0.1209 1.8115 49 1 1.2326 -1.1160 1.8356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610144712.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -94.600790 kcal Electronic energy + Delta-G solvation = -26529.607130 eV Core-core repulsion = 22841.273734 eV Total energy + Delta-G solvation = -3688.333397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88680 -40.31952 -38.61370 -37.49772 -35.20827 -34.42318 -32.71908 -31.66182 -31.45084 -30.52327 -27.99139 -27.02232 -26.36871 -25.15200 -23.32154 -22.58910 -22.10619 -21.20234 -20.81233 -19.27559 -18.66442 -17.90074 -17.49622 -17.03011 -16.88288 -16.10233 -15.98611 -15.72787 -15.30554 -15.28993 -14.99745 -14.67165 -14.39228 -14.22503 -14.00001 -13.96810 -13.75364 -13.45529 -13.36711 -13.18115 -12.95654 -12.76301 -12.74112 -12.63414 -12.46833 -12.30307 -12.07152 -11.91126 -11.68230 -11.63631 -11.58265 -11.48993 -11.38557 -11.21492 -10.91155 -10.81650 -9.58331 -9.38479 -8.91097 -8.60038 -6.23741 0.92922 1.03368 1.39289 1.49912 1.54012 2.22533 2.35429 2.72253 3.07067 3.41559 3.63310 3.68997 3.70661 3.91726 3.98548 4.02985 4.06917 4.25582 4.27351 4.29745 4.36686 4.45236 4.45948 4.50466 4.58889 4.69466 4.78024 4.82305 4.86880 4.95599 4.95940 5.00185 5.04230 5.08644 5.13502 5.14262 5.26404 5.32888 5.36083 5.39153 5.46447 5.51059 5.65172 5.95746 6.01822 6.05134 6.08095 6.22729 6.55083 6.72543 6.79240 6.94588 7.09044 8.36880 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.002156 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.006702 B =12985.162748 C =13497.367300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.110 4.110 5 C 0.055 3.945 6 H 0.053 0.947 7 C -0.134 4.134 8 N -0.519 5.519 9 C 0.028 3.972 10 C 0.129 3.871 11 H 0.098 0.902 12 O -0.560 6.560 13 C 0.033 3.967 14 O -0.329 6.329 15 C 0.000 4.000 16 C -0.176 4.176 17 C -0.153 4.153 18 C 0.053 3.947 19 C -0.499 4.499 20 H 0.076 0.924 21 C 0.033 3.967 22 N -0.833 5.833 23 Si 0.983 3.017 24 H -0.261 1.261 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.204 4.204 28 C -0.124 4.124 29 C 0.051 3.949 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.380 0.620 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.043 0.957 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 8.266 -18.899 22.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.052 4.052 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.244 5.244 9 C -0.101 4.101 10 C 0.070 3.930 11 H 0.116 0.884 12 O -0.367 6.367 13 C -0.043 4.043 14 O -0.244 6.244 15 C -0.044 4.044 16 C -0.195 4.195 17 C -0.173 4.173 18 C 0.051 3.949 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.181 4.181 22 N -0.460 5.460 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.223 4.223 28 C -0.142 4.142 29 C -0.077 4.077 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.229 0.771 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.136 0.864 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.135 0.865 48 H 0.062 0.938 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.292 7.553 -18.964 22.860 hybrid contribution 1.976 0.744 0.711 2.228 sum -8.316 8.297 -18.252 21.706 Atomic orbital electron populations 1.21771 0.94019 1.01682 1.01987 1.22079 0.96901 0.99162 0.94516 0.90290 1.22644 0.96563 0.98570 0.96989 1.22899 0.97054 0.96519 0.88760 0.92886 1.21674 1.01627 0.96645 0.99242 1.64648 1.20223 1.37446 1.02100 1.22730 0.93015 1.01379 0.92983 1.21731 0.92358 0.90250 0.88695 0.88387 1.86647 1.41736 1.27849 1.80442 1.23436 0.97868 0.98112 0.84883 1.85864 1.33695 1.76195 1.28676 1.18722 0.87481 1.05659 0.92518 1.20804 0.92169 1.05858 1.00634 1.20923 0.98506 1.03887 0.93967 1.17967 0.92457 0.91907 0.92548 1.19689 0.95812 1.20159 1.17264 0.90611 1.26725 1.02003 0.94308 0.95043 1.69871 1.23850 1.15842 1.36435 0.85248 0.76198 0.79002 0.79212 1.18546 1.19283 1.18481 1.20808 0.92891 1.08828 0.99823 1.19903 0.99039 1.02382 0.92920 1.22930 0.97930 0.90499 0.96293 0.92708 0.93157 0.91684 0.90785 0.89749 0.92417 0.90858 0.93093 0.88909 0.93189 0.77148 0.91538 0.92318 0.86373 0.87428 0.90264 0.87237 0.86508 0.93838 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.88 71.98 0.64 -1.22 16 2 C -0.11 -1.55 3.58 -9.92 -0.04 -1.59 16 3 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.11 -1.45 6.07 31.86 0.19 -1.25 16 5 C 0.06 0.85 2.91 45.32 0.13 0.98 16 6 H 0.05 0.80 8.02 -2.39 -0.02 0.78 16 7 C -0.13 -1.89 9.51 71.98 0.68 -1.21 16 8 N -0.52 -9.98 4.98 -857.90 -4.28 -14.25 16 9 C 0.03 0.54 4.51 86.30 0.39 0.93 16 10 C 0.13 3.23 3.41 30.60 0.10 3.33 16 11 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 12 O -0.56 -14.41 10.67 -144.35 -1.54 -15.95 16 13 C 0.03 1.01 4.36 71.98 0.31 1.32 16 14 O -0.33 -13.29 10.09 -85.27 -0.86 -14.15 16 15 C 0.00 0.00 6.71 22.79 0.15 0.16 16 16 C -0.18 -8.25 8.96 22.11 0.20 -8.05 16 17 C -0.15 -8.15 8.63 22.48 0.19 -7.96 16 18 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 19 C -0.50 -27.26 9.04 23.40 0.21 -27.05 16 20 H 0.08 3.97 7.90 -2.91 -0.02 3.95 16 21 C 0.03 1.67 5.15 85.24 0.44 2.11 16 22 N -0.83 -43.85 10.94 21.82 0.24 -43.61 16 23 Si 0.98 38.48 29.59 68.60 2.03 40.51 16 24 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 25 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 26 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 27 C -0.20 -10.34 9.74 22.49 0.22 -10.12 16 28 C -0.12 -5.86 9.92 22.11 0.22 -5.64 16 29 C 0.05 0.95 4.72 86.45 0.41 1.36 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 1.03 7.76 -2.39 -0.02 1.01 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.76 7.33 -2.39 -0.02 0.74 16 38 H 0.09 1.70 7.27 -2.38 -0.02 1.68 16 39 H 0.05 0.88 7.91 -2.39 -0.02 0.86 16 40 H 0.38 7.48 8.65 -74.06 -0.64 6.84 16 41 H 0.07 1.91 7.64 -2.39 -0.02 1.89 16 42 H 0.06 1.70 7.66 -2.39 -0.02 1.68 16 43 H 0.12 4.78 6.27 -2.91 -0.02 4.76 16 44 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 45 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 46 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 47 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 48 H 0.04 0.78 6.71 -2.38 -0.02 0.77 16 49 H 0.07 1.58 7.19 -2.39 -0.02 1.57 16 Total: -1.00 -62.65 385.28 0.23 -62.43 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: 0.29 Total: 36.11 kcal Atomic # 6 Polarization: -55.42 SS G_CDS: 4.34 Total: -51.08 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -4.04 Total: -57.86 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -2.40 Total: -30.11 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -62.65 0.23 -62.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610144712.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.174 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds