Wall clock time and date at job start Tue Mar 31 2020 13:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47194 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46857 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.46857 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47171 * 179.97438 * 20 19 18 22 22 C 1.38270 * 119.94510 * 269.72639 * 21 20 19 23 23 C 1.38144 * 120.05808 * 179.72409 * 22 21 20 24 24 C 1.38731 * 119.94116 * 0.57123 * 23 22 21 25 25 O 1.35902 * 120.05777 * 179.68302 * 24 23 22 26 26 C 1.38741 * 119.89135 * 359.70046 * 24 23 22 27 27 C 1.38142 * 119.94026 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 36 36 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 37 37 H 1.09005 * 109.46782 * 299.99358 * 17 16 14 38 38 H 1.09000 * 109.47104 * 59.99474 * 17 16 14 39 39 H 1.09005 * 109.46763 * 299.99408 * 18 17 16 40 40 H 1.09000 * 109.47492 * 59.99751 * 18 17 16 41 41 H 1.09005 * 109.46997 * 299.99322 * 19 18 17 42 42 H 1.08998 * 109.47941 * 59.99837 * 19 18 17 43 43 H 1.08996 * 109.46914 * 299.99191 * 20 19 18 44 44 H 1.09000 * 109.47492 * 59.99808 * 20 19 18 45 45 H 1.08004 * 119.96682 * 359.97101 * 22 21 20 46 46 H 1.07997 * 120.02652 * 180.24614 * 23 22 21 47 47 H 0.96700 * 113.99690 * 270.02292 * 25 24 23 48 48 H 1.07995 * 120.02944 * 179.97438 * 26 24 23 49 49 H 1.07998 * 119.97322 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 6 4.6551 -0.5052 5.3962 19 6 5.5049 0.4566 6.2290 20 6 6.0144 -0.2644 7.4786 21 6 6.8519 0.6828 8.2987 22 6 8.2146 0.7658 8.0794 23 6 8.9837 1.6373 8.8259 24 6 8.3897 2.4211 9.8044 25 8 9.1451 3.2746 10.5445 26 6 7.0230 2.3319 10.0264 27 6 6.2575 1.4629 9.2733 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 2.4483 -1.0888 3.9070 36 1 3.9016 -1.6021 3.0167 37 1 4.9929 0.5593 3.5536 38 1 3.5391 1.0719 4.4437 39 1 3.8073 -0.8481 5.9892 40 1 5.2612 -1.3613 5.0997 41 1 6.3528 0.7991 5.6357 42 1 4.8994 1.3130 6.5256 43 1 5.1663 -0.6065 8.0717 44 1 6.6199 -1.1210 7.1825 45 1 8.6774 0.1515 7.3211 46 1 10.0474 1.7046 8.6514 47 1 9.5021 2.8832 11.3535 48 1 6.5583 2.9406 10.7877 49 1 5.1937 1.3927 9.4459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610714170.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:50 Heat of formation + Delta-G solvation = -103.616118 kcal Electronic energy + Delta-G solvation = -25403.185213 eV Core-core repulsion = 21714.460882 eV Total energy + Delta-G solvation = -3688.724331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.75596 -40.66222 -38.20162 -37.26943 -36.45911 -34.81549 -33.68658 -31.91477 -31.60199 -30.19879 -27.60457 -27.34930 -27.09574 -24.32595 -23.74096 -22.70585 -21.76532 -21.72359 -19.74455 -19.34350 -18.50261 -17.74698 -17.09887 -17.05401 -16.75282 -16.68385 -16.17381 -16.04411 -15.79741 -14.89949 -14.72681 -14.53357 -14.50028 -14.29248 -14.20798 -13.79015 -13.48273 -13.32532 -13.17868 -13.09764 -12.92243 -12.91014 -12.71183 -12.62465 -12.47924 -12.38942 -12.17266 -12.12267 -11.84711 -11.72366 -11.59419 -11.38135 -11.28343 -11.17967 -10.61792 -10.43247 -9.93107 -9.37131 -9.28509 -8.14390 -6.31448 0.28420 0.41138 1.40562 1.43267 1.50708 1.88672 2.34962 2.54814 2.69214 3.12847 3.33119 3.74426 3.85966 3.91530 4.06589 4.09838 4.14532 4.30980 4.34445 4.47303 4.48416 4.58338 4.64796 4.70584 4.75651 4.80610 4.85145 4.88266 4.91029 4.99429 5.03937 5.05487 5.07091 5.11241 5.12016 5.16297 5.37927 5.40071 5.46889 5.47045 5.48267 5.58399 5.64739 5.69476 5.73479 5.94905 6.05606 6.17045 6.76942 6.85521 6.90281 7.34062 7.54481 8.89577 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026212 B = 0.001709 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.945639 B =16375.806597 C =16609.441810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.258 3.742 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.485 3.515 15 O -0.613 6.613 16 C -0.123 4.123 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.109 4.109 23 C -0.156 4.156 24 C 0.084 3.916 25 O -0.514 6.514 26 C -0.155 4.155 27 C -0.108 4.108 28 H 0.049 0.951 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.408 0.592 48 H 0.137 0.863 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.027 -7.569 27.059 30.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.155 3.845 3 H 0.022 0.978 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.335 5.335 13 C -0.059 4.059 14 C 0.275 3.725 15 O -0.496 6.496 16 C -0.162 4.162 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.150 4.150 20 C -0.111 4.111 21 C -0.097 4.097 22 C -0.127 4.127 23 C -0.174 4.174 24 C 0.040 3.960 25 O -0.327 6.327 26 C -0.174 4.174 27 C -0.126 4.126 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.267 0.733 48 H 0.155 0.845 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.938 -6.492 26.373 29.280 hybrid contribution 0.363 0.117 -0.923 0.998 sum 11.301 -6.375 25.450 28.567 Atomic orbital electron populations 1.21866 0.97201 1.00118 0.99839 1.18512 0.91654 0.92144 0.82164 0.97771 1.21557 1.31868 1.13020 0.91208 0.92163 1.25789 0.95130 0.95698 1.02159 1.70027 1.37338 1.23947 1.24442 0.85487 0.78353 0.79016 0.78018 1.20933 1.20317 1.18553 1.48301 1.49274 1.13525 1.22430 1.21820 1.01307 0.80232 1.02545 1.21758 0.77999 0.86823 0.85908 1.90609 1.60263 1.20149 1.78547 1.21726 1.02118 0.99737 0.92663 1.21299 0.98541 0.97707 0.96388 1.21542 1.00142 0.98199 0.94472 1.21534 0.99242 0.98494 0.95737 1.20608 0.99118 0.96442 0.94885 1.20216 0.94306 0.98373 0.96807 1.21214 0.93576 0.98573 0.99370 1.21624 1.01325 0.96699 0.97790 1.18675 0.90324 0.92114 0.94909 1.84783 1.68960 1.39062 1.39913 1.21631 0.93641 1.00133 1.01968 1.21215 1.00689 0.95444 0.95276 0.93222 0.96195 0.91557 0.92680 0.92711 0.88189 0.91454 0.86296 0.87039 0.93891 0.93419 0.89995 0.90362 0.93012 0.92760 0.89537 0.89736 0.84329 0.84614 0.73331 0.84521 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.95 71.98 0.64 -5.84 16 2 C 0.26 13.78 2.64 44.24 0.12 13.89 16 3 H 0.00 0.28 6.90 -2.38 -0.02 0.26 16 4 C -0.54 -29.83 8.37 25.60 0.21 -29.61 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 12 N -0.60 -25.78 2.75 -826.81 -2.28 -28.05 16 13 C 0.08 2.53 9.48 127.77 1.21 3.74 16 14 C 0.49 20.11 7.67 87.66 0.67 20.78 16 15 O -0.61 -32.13 15.31 -3.03 -0.05 -32.18 16 16 C -0.12 -3.19 4.25 29.85 0.13 -3.06 16 17 C -0.10 -2.58 4.50 30.60 0.14 -2.45 16 18 C -0.11 -1.71 5.21 30.59 0.16 -1.55 16 19 C -0.11 -1.85 5.20 30.59 0.16 -1.69 16 20 C -0.07 -0.91 5.34 29.85 0.16 -0.75 16 21 C -0.10 -1.49 5.14 -19.85 -0.10 -1.59 16 22 C -0.11 -1.70 9.69 22.25 0.22 -1.49 16 23 C -0.16 -2.54 9.99 22.37 0.22 -2.31 16 24 C 0.08 1.43 6.71 22.51 0.15 1.58 16 25 O -0.51 -7.73 13.50 -92.45 -1.25 -8.98 16 26 C -0.16 -2.48 9.99 22.37 0.22 -2.26 16 27 C -0.11 -1.65 9.69 22.25 0.22 -1.43 16 28 H 0.05 2.19 6.66 -2.39 -0.02 2.18 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 2.08 6.44 -2.38 -0.02 2.07 16 34 H 0.07 2.11 6.43 -2.39 -0.02 2.09 16 35 H 0.12 2.31 7.40 -2.38 -0.02 2.29 16 36 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 37 H 0.04 1.30 8.10 -2.38 -0.02 1.28 16 38 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 44 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 45 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 46 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.41 1.95 9.06 -74.06 -0.67 1.28 16 48 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 49 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -77.28 398.34 3.93 -73.35 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.25 Total: 16.96 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 4.98 Total: -12.95 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.03 Total: -81.83 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.29 Total: -41.15 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -77.28 3.93 -73.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610714170.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.264 kcal (2) G-P(sol) polarization free energy of solvation -77.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds