Wall clock time and date at job start Tue Mar 31 2020 12:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 117.00109 * 2 1 4 4 C 1.38757 * 120.05270 * 0.20781 * 3 2 1 5 5 C 1.38126 * 119.94067 * 180.22937 * 4 3 2 6 6 C 1.38292 * 120.05473 * 359.81612 * 5 4 3 7 7 C 1.38244 * 120.11350 * 359.97316 * 6 5 4 8 8 C 1.50690 * 119.97235 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47674 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.47367 * 299.97662 * 8 7 6 11 11 C 1.50696 * 109.47456 * 59.97734 * 8 7 6 12 12 O 1.21278 * 119.99880 * 337.58167 * 11 8 7 13 13 N 1.34782 * 120.00445 * 157.57632 * 11 8 7 14 14 C 1.46504 * 119.99404 * 6.41006 * 13 11 8 15 15 C 1.50695 * 109.47401 * 90.47442 * 14 13 11 16 16 H 1.08007 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00348 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00274 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47023 * 119.99990 * 19 17 15 22 22 H 1.48501 * 109.46897 * 239.99797 * 19 17 15 23 23 C 1.46495 * 120.00427 * 186.40262 * 13 11 8 24 24 C 1.52997 * 109.46740 * 95.63898 * 23 13 11 25 25 C 1.53012 * 109.47030 * 173.90524 * 24 23 13 26 26 C 1.52992 * 109.47731 * 293.90557 * 24 23 13 27 27 C 1.38166 * 120.05662 * 359.97438 * 7 6 5 28 28 H 1.08995 * 109.46615 * 59.99829 * 1 2 3 29 29 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 300.00192 * 1 2 3 31 31 H 1.07997 * 120.03473 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97114 * 179.78703 * 5 4 3 33 33 H 1.08000 * 119.94292 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47472 * 180.73073 * 10 8 7 35 35 H 1.09006 * 109.46672 * 300.73452 * 10 8 7 36 36 H 1.09002 * 109.46713 * 60.72769 * 10 8 7 37 37 H 1.08999 * 109.46464 * 210.47192 * 14 13 11 38 38 H 1.09000 * 109.47147 * 330.47151 * 14 13 11 39 39 H 0.97000 * 120.00352 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47775 * 215.64280 * 23 13 11 41 41 H 1.08997 * 109.46910 * 335.64595 * 23 13 11 42 42 H 1.09000 * 109.47166 * 53.90937 * 24 23 13 43 43 H 1.09000 * 109.46809 * 60.00194 * 25 24 23 44 44 H 1.08997 * 109.46807 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.46693 * 300.00338 * 25 24 23 46 46 H 1.08999 * 109.47661 * 185.58403 * 26 24 23 47 47 H 1.09004 * 109.47287 * 305.59121 * 26 24 23 48 48 H 1.09003 * 109.47055 * 65.58175 * 26 24 23 49 49 H 1.07989 * 120.03252 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9209 3.6048 -0.0004 6 6 3.3020 3.6757 -0.0057 7 6 4.0561 2.5171 -0.0057 8 6 5.5608 2.5981 -0.0109 9 1 5.9790 1.5915 -0.0096 10 6 6.0272 3.3425 -1.2637 11 6 6.0283 3.3377 1.2160 12 8 5.2753 4.0943 1.7917 13 7 7.2833 3.1583 1.6738 14 6 8.2364 2.3562 0.9028 15 6 8.9914 3.2492 -0.0477 16 1 8.7819 4.3085 -0.0751 17 6 9.9495 2.7143 -0.8823 18 7 10.2051 1.4246 -0.8486 19 14 10.8849 3.8212 -2.0610 20 1 10.4136 5.2207 -1.9052 21 1 12.3371 3.7510 -1.7591 22 1 10.6471 3.3717 -3.4563 23 6 7.6943 3.7656 2.9420 24 6 7.5425 2.7430 4.0698 25 6 8.1127 3.3241 5.3654 26 6 6.0608 2.4163 4.2662 27 6 3.4312 1.2848 0.0002 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2129 2.3204 0.0082 32 1 1.3341 4.5113 -0.0005 33 1 3.7923 4.6380 -0.0099 34 1 7.1161 3.3898 -1.2740 35 1 5.6779 2.8145 -2.1511 36 1 5.6196 4.3534 -1.2584 37 1 8.9383 1.8734 1.5827 38 1 7.6976 1.5963 0.3369 39 1 10.8794 1.0483 -1.4356 40 1 8.7358 4.0795 2.8740 41 1 7.0665 4.6320 3.1503 42 1 8.0838 1.8331 3.8106 43 1 7.5713 4.2339 5.6246 44 1 8.0049 2.5953 6.1687 45 1 9.1682 3.5567 5.2254 46 1 5.9439 1.7652 5.1325 47 1 5.5035 3.3392 4.4274 48 1 5.6792 1.9119 3.3785 49 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751373746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:34 Heat of formation + Delta-G solvation = -66.450282 kcal Electronic energy + Delta-G solvation = -28045.627040 eV Core-core repulsion = 24358.514341 eV Total energy + Delta-G solvation = -3687.112699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.20732 -39.31480 -37.39401 -35.84218 -34.32592 -33.06599 -32.28622 -30.52061 -28.78815 -27.46204 -27.25398 -26.78802 -25.91857 -23.64058 -22.97760 -22.32291 -21.13803 -19.67759 -18.44473 -17.27292 -16.63795 -16.44354 -15.96394 -15.70289 -15.69412 -15.28032 -14.62220 -14.43937 -14.32497 -13.88821 -13.56784 -13.35077 -13.10559 -12.96395 -12.54347 -12.37066 -12.31103 -12.13320 -11.91554 -11.82385 -11.53658 -11.43070 -11.32364 -11.08671 -10.97553 -10.91403 -10.85166 -10.78069 -10.69409 -10.51461 -10.32566 -10.25072 -10.04142 -9.67802 -8.95188 -8.61016 -8.45484 -7.93334 -7.63664 -6.20415 -4.26366 1.54636 1.73975 3.20174 3.29560 3.31581 3.32664 3.46719 3.87542 4.15821 4.32840 4.88484 4.97736 5.05900 5.11627 5.12050 5.25687 5.29911 5.32482 5.36437 5.38786 5.51331 5.59941 5.68612 5.74020 5.90478 5.93596 5.96186 6.02745 6.07160 6.17956 6.24346 6.32112 6.37352 6.42721 6.43864 6.47976 6.51607 6.66383 6.70889 6.75928 6.84263 6.95726 7.00999 7.10056 7.24276 7.54340 7.57869 7.75418 8.04940 8.38408 8.78839 9.07067 9.39897 10.85771 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.004369 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.875876 B = 6406.949199 C = 7909.864872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.115 3.885 4 C -0.214 4.214 5 C -0.090 4.090 6 C -0.111 4.111 7 C -0.022 4.022 8 C -0.067 4.067 9 H 0.101 0.899 10 C -0.151 4.151 11 C 0.527 3.473 12 O -0.565 6.565 13 N -0.593 5.593 14 C 0.235 3.765 15 C -0.533 4.533 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.124 3.876 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.145 4.145 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.302 -0.299 3.543 13.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.108 4.108 6 C -0.129 4.129 7 C -0.023 4.023 8 C -0.088 4.088 9 H 0.119 0.881 10 C -0.208 4.208 11 C 0.315 3.685 12 O -0.446 6.446 13 N -0.323 5.323 14 C 0.115 3.885 15 C -0.572 4.572 16 H 0.081 0.919 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.000 4.000 24 C -0.132 4.132 25 C -0.199 4.199 26 C -0.192 4.192 27 C -0.164 4.164 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.461 -0.251 3.759 13.978 hybrid contribution 0.423 0.492 -0.716 0.966 sum -13.039 0.242 3.043 13.391 Atomic orbital electron populations 1.22978 0.78985 1.03459 1.01110 1.86055 1.20887 1.27278 1.89207 1.18878 0.92137 0.83884 0.98004 1.21106 0.99397 0.92552 1.10211 1.20875 0.94686 0.96620 0.98646 1.20961 0.93034 0.98689 1.00216 1.19413 0.94612 0.92175 0.96077 1.20214 0.90760 1.02052 0.95757 0.88101 1.22011 1.06101 0.98650 0.94013 1.20132 0.81765 0.81846 0.84762 1.90582 1.55102 1.38649 1.60233 1.48122 1.11522 1.51271 1.21358 1.19469 0.87473 0.90715 0.90853 1.21485 1.20287 0.95063 1.20359 0.91863 1.24929 0.96590 0.95017 0.97143 1.69927 1.32917 1.11048 1.38696 0.86531 0.79781 0.80968 0.80804 1.19576 1.20879 1.20760 1.21351 1.00542 0.95367 0.82739 1.21505 0.96772 0.99749 0.95194 1.21747 1.00714 1.00620 0.96802 1.21725 0.95753 1.01198 1.00562 1.20301 0.91237 0.98151 1.06710 0.92922 0.88608 0.92918 0.86136 0.86240 0.85519 0.87226 0.92640 0.93187 0.94759 0.94216 0.92538 0.90817 0.90731 0.91046 0.92893 0.93014 0.92652 0.93841 0.92592 0.93105 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.42 10.50 -19.43 -0.20 -4.63 16 3 C 0.12 1.75 6.69 -39.21 -0.26 1.49 16 4 C -0.21 -2.92 9.04 -39.43 -0.36 -3.27 16 5 C -0.09 -1.29 10.04 -39.60 -0.40 -1.69 16 6 C -0.11 -1.84 7.87 -39.56 -0.31 -2.15 16 7 C -0.02 -0.39 4.62 -104.65 -0.48 -0.87 16 8 C -0.07 -1.24 2.11 -92.93 -0.20 -1.44 16 9 H 0.10 1.90 6.12 -51.93 -0.32 1.58 16 10 C -0.15 -2.77 8.90 37.16 0.33 -2.44 16 11 C 0.53 10.71 5.45 -10.98 -0.06 10.65 16 12 O -0.57 -12.17 13.55 5.56 0.08 -12.09 16 13 N -0.59 -12.12 2.28 -175.07 -0.40 -12.52 16 14 C 0.23 5.35 4.85 -5.19 -0.03 5.33 16 15 C -0.53 -13.17 6.84 -34.44 -0.24 -13.41 16 16 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 17 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -23.66 13.29 55.43 0.74 -22.93 16 19 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.12 2.27 4.97 -4.05 -0.02 2.25 16 24 C -0.11 -1.80 3.11 -90.62 -0.28 -2.09 16 25 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 26 C -0.13 -2.19 8.27 37.15 0.31 -1.88 16 27 C -0.15 -2.39 9.61 -39.43 -0.38 -2.77 16 28 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 31 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.13 2.18 6.95 -52.49 -0.36 1.82 16 34 H 0.11 2.30 5.00 -51.93 -0.26 2.04 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.88 7.41 -51.93 -0.38 0.49 16 37 H 0.03 0.83 8.02 -51.93 -0.42 0.41 16 38 H 0.04 0.94 5.85 -51.93 -0.30 0.63 16 39 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 41 H 0.07 1.40 7.19 -51.93 -0.37 1.02 16 42 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.92 7.04 -51.93 -0.37 0.55 16 49 H 0.13 2.01 7.94 -52.49 -0.42 1.60 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -28.00 387.85 -8.20 -36.21 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.10 Total: 6.15 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.14 Total: -10.96 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.34 Total: -35.45 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.13 Total: -16.72 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.00 -8.20 -36.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.243 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds