Wall clock time and date at job start Tue Mar 31 2020 12:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 117.00109 * 2 1 4 4 C 1.38757 * 120.05270 * 0.20781 * 3 2 1 5 5 C 1.38126 * 119.94067 * 180.22937 * 4 3 2 6 6 C 1.38292 * 120.05473 * 359.81612 * 5 4 3 7 7 C 1.38244 * 120.11350 * 359.97316 * 6 5 4 8 8 C 1.50690 * 119.97235 * 180.02562 * 7 6 5 9 9 H 1.09007 * 109.47674 * 179.97438 * 8 7 6 10 10 C 1.53008 * 109.47367 * 299.97662 * 8 7 6 11 11 C 1.50696 * 109.47456 * 59.97734 * 8 7 6 12 12 O 1.21278 * 119.99880 * 337.58167 * 11 8 7 13 13 N 1.34782 * 120.00445 * 157.57632 * 11 8 7 14 14 C 1.46504 * 119.99404 * 6.41006 * 13 11 8 15 15 C 1.50695 * 109.47401 * 90.47442 * 14 13 11 16 16 H 1.08007 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00348 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00274 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47023 * 119.99990 * 19 17 15 22 22 H 1.48501 * 109.46897 * 239.99797 * 19 17 15 23 23 C 1.46495 * 120.00427 * 186.40262 * 13 11 8 24 24 C 1.52997 * 109.46740 * 95.63898 * 23 13 11 25 25 C 1.53012 * 109.47030 * 173.90524 * 24 23 13 26 26 C 1.52992 * 109.47731 * 293.90557 * 24 23 13 27 27 C 1.38166 * 120.05662 * 359.97438 * 7 6 5 28 28 H 1.08995 * 109.46615 * 59.99829 * 1 2 3 29 29 H 1.08995 * 109.46889 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47065 * 300.00192 * 1 2 3 31 31 H 1.07997 * 120.03473 * 0.02562 * 4 3 2 32 32 H 1.07996 * 119.97114 * 179.78703 * 5 4 3 33 33 H 1.08000 * 119.94292 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.47472 * 180.73073 * 10 8 7 35 35 H 1.09006 * 109.46672 * 300.73452 * 10 8 7 36 36 H 1.09002 * 109.46713 * 60.72769 * 10 8 7 37 37 H 1.08999 * 109.46464 * 210.47192 * 14 13 11 38 38 H 1.09000 * 109.47147 * 330.47151 * 14 13 11 39 39 H 0.97000 * 120.00352 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47775 * 215.64280 * 23 13 11 41 41 H 1.08997 * 109.46910 * 335.64595 * 23 13 11 42 42 H 1.09000 * 109.47166 * 53.90937 * 24 23 13 43 43 H 1.09000 * 109.46809 * 60.00194 * 25 24 23 44 44 H 1.08997 * 109.46807 * 180.02562 * 25 24 23 45 45 H 1.08995 * 109.46693 * 300.00338 * 25 24 23 46 46 H 1.08999 * 109.47661 * 185.58403 * 26 24 23 47 47 H 1.09004 * 109.47287 * 305.59121 * 26 24 23 48 48 H 1.09003 * 109.47055 * 65.58175 * 26 24 23 49 49 H 1.07989 * 120.03252 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9209 3.6048 -0.0004 6 6 3.3020 3.6757 -0.0057 7 6 4.0561 2.5171 -0.0057 8 6 5.5608 2.5981 -0.0109 9 1 5.9790 1.5915 -0.0096 10 6 6.0272 3.3425 -1.2637 11 6 6.0283 3.3377 1.2160 12 8 5.2753 4.0943 1.7917 13 7 7.2833 3.1583 1.6738 14 6 8.2364 2.3562 0.9028 15 6 8.9914 3.2492 -0.0477 16 1 8.7819 4.3085 -0.0751 17 6 9.9495 2.7143 -0.8823 18 7 10.2051 1.4246 -0.8486 19 14 10.8849 3.8212 -2.0610 20 1 10.4136 5.2207 -1.9052 21 1 12.3371 3.7510 -1.7591 22 1 10.6471 3.3717 -3.4563 23 6 7.6943 3.7656 2.9420 24 6 7.5425 2.7430 4.0698 25 6 8.1127 3.3241 5.3654 26 6 6.0608 2.4163 4.2662 27 6 3.4312 1.2848 0.0002 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2129 2.3204 0.0082 32 1 1.3341 4.5113 -0.0005 33 1 3.7923 4.6380 -0.0099 34 1 7.1161 3.3898 -1.2740 35 1 5.6779 2.8145 -2.1511 36 1 5.6196 4.3534 -1.2584 37 1 8.9383 1.8734 1.5827 38 1 7.6976 1.5963 0.3369 39 1 10.8794 1.0483 -1.4356 40 1 8.7358 4.0795 2.8740 41 1 7.0665 4.6320 3.1503 42 1 8.0838 1.8331 3.8106 43 1 7.5713 4.2339 5.6246 44 1 8.0049 2.5953 6.1687 45 1 9.1682 3.5567 5.2254 46 1 5.9439 1.7652 5.1325 47 1 5.5035 3.3392 4.4274 48 1 5.6792 1.9119 3.3785 49 1 4.0207 0.3799 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751373746.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:33 Heat of formation + Delta-G solvation = -79.335590 kcal Electronic energy + Delta-G solvation = -28046.185789 eV Core-core repulsion = 24358.514341 eV Total energy + Delta-G solvation = -3687.671448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53919 -40.66028 -38.59054 -37.30737 -35.97392 -34.54939 -34.04499 -31.66603 -30.05424 -29.28347 -28.10922 -28.05668 -27.40745 -25.12960 -24.78394 -23.49434 -22.40016 -21.00152 -19.92927 -18.65336 -18.29788 -18.14345 -17.14344 -17.07914 -16.72638 -16.59571 -16.26840 -16.00449 -15.71424 -15.17563 -14.85426 -14.63384 -14.40401 -14.35186 -14.21427 -13.81268 -13.59584 -13.42218 -13.21245 -13.03223 -13.00952 -12.90232 -12.75881 -12.67645 -12.53483 -12.32016 -12.25479 -12.21345 -11.96759 -11.87164 -11.82872 -11.62468 -11.55967 -11.49754 -10.63807 -10.44002 -9.76529 -9.35002 -9.08579 -8.17062 -6.28940 0.35191 0.54729 1.41219 1.45537 1.54912 1.82552 2.27096 2.40808 2.50235 2.87696 3.12708 3.71705 3.78189 3.90114 3.98011 4.05422 4.14454 4.17927 4.22126 4.34348 4.40896 4.42683 4.47143 4.58564 4.66290 4.67715 4.73143 4.75698 4.78373 4.89197 4.91342 4.98075 5.00329 5.01527 5.05752 5.09400 5.20058 5.25933 5.33070 5.39947 5.45221 5.46631 5.56836 5.69342 5.74932 5.84611 5.92225 6.10050 6.49975 6.62077 6.86127 7.34842 7.46501 8.88423 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.004369 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.875876 B = 6406.949199 C = 7909.864872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.206 4.206 5 C -0.085 4.085 6 C -0.129 4.129 7 C -0.037 4.037 8 C -0.063 4.063 9 H 0.090 0.910 10 C -0.142 4.142 11 C 0.525 3.475 12 O -0.577 6.577 13 N -0.597 5.597 14 C 0.252 3.748 15 C -0.533 4.533 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.918 5.918 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.278 1.278 23 C 0.121 3.879 24 C -0.108 4.108 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.165 4.165 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.029 0.971 39 H 0.267 0.733 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.024 0.976 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.138 0.136 3.837 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.103 4.103 6 C -0.147 4.147 7 C -0.037 4.037 8 C -0.084 4.084 9 H 0.108 0.892 10 C -0.199 4.199 11 C 0.314 3.686 12 O -0.458 6.458 13 N -0.326 5.326 14 C 0.131 3.869 15 C -0.571 4.571 16 H 0.072 0.928 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.775 3.225 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.204 1.204 23 C -0.002 4.002 24 C -0.127 4.127 25 C -0.192 4.192 26 C -0.184 4.184 27 C -0.184 4.184 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.043 0.957 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.309 0.188 4.064 15.840 hybrid contribution 0.865 0.314 -0.781 1.207 sum -14.444 0.502 3.283 14.821 Atomic orbital electron populations 1.23347 0.76380 1.05519 1.02330 1.86041 1.23587 1.26708 1.88907 1.18972 0.91791 0.85081 0.97239 1.21465 1.01090 0.91504 1.08356 1.21204 0.93792 0.98240 0.97077 1.20961 0.94338 0.97724 1.01689 1.19288 0.93542 0.93066 0.97850 1.20133 0.92268 1.01017 0.94961 0.89187 1.21882 1.04149 0.99218 0.94668 1.20410 0.81447 0.81653 0.85084 1.90557 1.55262 1.39270 1.60747 1.48127 1.11370 1.51138 1.22007 1.19098 0.87174 0.90402 0.90212 1.21576 1.20303 0.94678 1.20565 0.92780 1.25556 0.97372 0.96034 0.98476 1.70014 1.33664 1.12378 1.39644 0.85637 0.78504 0.79349 0.79029 1.19435 1.20629 1.20361 1.21489 1.00066 0.95957 0.82704 1.21454 0.96820 0.98628 0.95830 1.21698 1.00834 1.01255 0.95394 1.21637 0.95451 1.00972 1.00301 1.20346 0.92473 0.97653 1.07947 0.91478 0.86378 0.91747 0.82646 0.83271 0.86759 0.89850 0.91217 0.92699 0.96431 0.95288 0.92398 0.91221 0.91103 0.92246 0.92123 0.91196 0.92180 0.91507 0.93270 0.95682 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.76 10.50 -92.43 -0.97 -9.73 16 3 C 0.11 3.31 6.69 22.51 0.15 3.46 16 4 C -0.21 -5.05 9.04 22.37 0.20 -4.84 16 5 C -0.09 -2.25 10.04 22.26 0.22 -2.03 16 6 C -0.13 -4.25 7.87 22.28 0.18 -4.07 16 7 C -0.04 -1.31 4.62 -19.88 -0.09 -1.40 16 8 C -0.06 -2.43 2.11 -12.29 -0.03 -2.46 16 9 H 0.09 3.62 6.12 -2.38 -0.01 3.61 16 10 C -0.14 -5.38 8.90 71.98 0.64 -4.74 16 11 C 0.53 22.09 5.45 87.65 0.48 22.57 16 12 O -0.58 -25.40 13.55 -3.02 -0.04 -25.44 16 13 N -0.60 -25.33 2.28 -826.18 -1.89 -27.21 16 14 C 0.25 11.97 4.85 85.63 0.42 12.39 16 15 C -0.53 -26.99 6.84 25.60 0.18 -26.81 16 16 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 17 C 0.03 1.35 5.46 84.65 0.46 1.81 16 18 N -0.92 -49.79 13.29 21.45 0.28 -49.50 16 19 Si 0.95 41.22 29.54 68.60 2.03 43.25 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 23 C 0.12 4.52 4.97 86.38 0.43 4.95 16 24 C -0.11 -3.45 3.11 -10.79 -0.03 -3.48 16 25 C -0.13 -3.33 9.19 71.99 0.66 -2.67 16 26 C -0.13 -4.06 8.27 71.98 0.59 -3.47 16 27 C -0.17 -5.53 9.61 22.37 0.21 -5.31 16 28 H 0.07 0.83 7.67 -2.39 -0.02 0.81 16 29 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 0.83 7.65 -2.39 -0.02 0.81 16 31 H 0.16 2.67 6.30 -2.91 -0.02 2.65 16 32 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.11 3.99 6.95 -2.91 -0.02 3.97 16 34 H 0.08 3.62 5.00 -2.39 -0.01 3.60 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.05 1.98 7.41 -2.39 -0.02 1.96 16 37 H 0.02 0.89 8.02 -2.39 -0.02 0.87 16 38 H 0.03 1.45 5.85 -2.39 -0.01 1.43 16 39 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 41 H 0.07 2.70 7.19 -2.39 -0.02 2.68 16 42 H 0.06 2.05 8.09 -2.39 -0.02 2.03 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 48 H 0.02 0.91 7.04 -2.39 -0.02 0.89 16 49 H 0.12 4.06 7.94 -2.92 -0.02 4.04 16 Total: -1.00 -60.85 387.85 6.12 -54.73 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.92 Total: 28.62 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.78 Total: -14.71 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.60 Total: -76.72 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.01 Total: -35.18 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -60.85 6.12 -54.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751373746.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.606 kcal (2) G-P(sol) polarization free energy of solvation -60.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds