Wall clock time and date at job start Tue Mar 31 2020 12:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00008 * 2 1 4 4 C 1.53000 * 109.47058 * 209.99670 * 3 2 1 5 5 C 1.52999 * 109.47412 * 299.99752 * 4 3 2 6 6 C 1.53000 * 109.46809 * 300.00447 * 5 4 3 7 7 N 1.46896 * 109.46894 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00605 * 80.75711 * 7 6 5 9 9 H 1.09005 * 109.46689 * 329.11368 * 8 7 6 10 10 C 1.52993 * 109.47408 * 209.11837 * 8 7 6 11 11 C 1.50701 * 109.47181 * 89.11272 * 8 7 6 12 12 C 1.38301 * 119.93217 * 39.73037 * 11 8 7 13 13 C 1.38091 * 120.06827 * 179.72582 * 12 11 8 14 14 C 1.38875 * 119.93408 * 0.54342 * 13 12 11 15 15 O 1.35754 * 120.07542 * 179.74781 * 14 13 12 16 16 C 1.34826 * 117.00303 * 174.11634 * 15 14 13 17 17 H 1.08000 * 119.99778 * 5.09419 * 16 15 14 18 18 C 1.38656 * 119.99780 * 185.08931 * 16 15 14 19 19 N 1.31551 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46896 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47316 * 120.00136 * 20 18 16 23 23 H 1.48498 * 109.47079 * 240.00224 * 20 18 16 24 24 C 1.38881 * 119.85912 * 359.73651 * 14 13 12 25 25 C 1.38101 * 119.93279 * 359.97438 * 24 14 13 26 26 C 1.53000 * 109.47498 * 59.99605 * 6 5 4 27 27 C 1.52993 * 109.47367 * 89.99388 * 3 2 1 28 28 H 1.08998 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47609 * 300.00370 * 1 2 3 30 30 H 1.09000 * 109.46875 * 60.00936 * 1 2 3 31 31 H 1.09005 * 109.46528 * 329.99442 * 3 2 1 32 32 H 1.09000 * 109.47099 * 60.00268 * 4 3 2 33 33 H 1.08997 * 109.46643 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46870 * 59.99494 * 5 4 3 35 35 H 1.08997 * 109.47239 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47104 * 299.99729 * 6 5 4 37 37 H 1.00906 * 111.00073 * 204.71074 * 7 6 5 38 38 H 1.09003 * 109.47073 * 184.98417 * 10 8 7 39 39 H 1.09001 * 109.47213 * 304.98013 * 10 8 7 40 40 H 1.08998 * 109.47855 * 64.98323 * 10 8 7 41 41 H 1.08002 * 119.96022 * 0.02562 * 12 11 8 42 42 H 1.08007 * 120.03421 * 180.27409 * 13 12 11 43 43 H 0.97004 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.03443 * 179.97438 * 24 14 13 45 45 H 1.07995 * 119.96908 * 180.02562 * 25 24 14 46 46 H 1.09003 * 109.47154 * 180.02562 * 26 6 5 47 47 H 1.09002 * 109.46842 * 59.99963 * 26 6 5 48 48 H 1.09002 * 109.47323 * 180.02562 * 27 3 2 49 49 H 1.09005 * 109.47499 * 300.00543 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 4.2928 0.2893 0.0001 6 6 4.5000 0.7553 1.4426 7 7 5.3971 -0.1794 2.1350 8 6 6.8020 0.0997 1.8088 9 1 6.8671 0.5029 0.7982 10 6 7.6124 -1.1951 1.8944 11 6 7.3548 1.1040 2.7870 12 6 7.0129 1.0248 4.1247 13 6 7.5224 1.9402 5.0244 14 6 8.3698 2.9479 4.5829 15 8 8.8682 3.8525 5.4640 16 6 9.7786 4.7283 4.9931 17 1 10.0190 4.7436 3.9403 18 6 10.4062 5.6094 5.8605 19 7 10.1137 5.5904 7.1430 20 14 11.6672 6.8233 5.2080 21 1 11.8147 6.6434 3.7413 22 1 11.2145 8.2086 5.4932 23 1 12.9743 6.5835 5.8706 24 6 8.7066 3.0283 3.2379 25 6 8.1986 2.1063 2.3441 26 6 3.1513 0.7975 2.1638 27 6 2.2175 1.7715 1.4424 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.3449 1.9993 -0.5140 32 1 3.2112 0.9313 -1.7489 33 1 3.8020 2.2591 -0.7215 34 1 3.8494 -0.7064 0.0002 35 1 5.2537 0.2596 -0.5134 36 1 4.9433 1.7511 1.4426 37 1 5.2456 -0.1544 3.1323 38 1 8.6684 -0.9737 1.7396 39 1 7.4760 -1.6448 2.8779 40 1 7.2705 -1.8894 1.1269 41 1 6.3507 0.2432 4.4668 42 1 7.2585 1.8752 6.0698 43 1 10.5530 6.2066 7.7498 44 1 9.3651 3.8111 2.8914 45 1 8.4605 2.1680 1.2982 46 1 3.2990 1.1300 3.1913 47 1 2.7080 -0.1983 2.1638 48 1 2.6605 2.7675 1.4424 49 1 1.2567 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753565773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:47 Heat of formation + Delta-G solvation = -63.836084 kcal Electronic energy + Delta-G solvation = -27063.810160 eV Core-core repulsion = 23376.810821 eV Total energy + Delta-G solvation = -3686.999339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.82011 -39.12123 -37.66934 -36.28024 -34.37414 -32.28341 -31.18476 -30.74209 -30.22371 -27.98766 -27.55079 -26.50317 -25.41256 -23.09067 -22.38034 -22.16395 -21.40707 -19.85183 -19.65704 -17.96693 -17.02855 -16.54334 -16.12992 -15.82013 -15.54488 -15.18666 -14.62852 -14.47580 -14.07040 -13.89186 -13.67626 -13.58514 -13.51379 -13.12206 -12.89294 -12.71891 -12.58044 -12.41558 -12.27833 -12.17908 -11.78870 -11.68601 -11.58844 -11.33566 -11.20006 -11.13547 -10.79005 -10.75031 -10.70866 -10.48791 -10.39327 -10.35826 -10.19122 -9.60710 -9.35791 -8.85211 -8.28894 -8.18171 -7.18818 -6.47504 -4.06351 2.17086 2.28365 3.10126 3.11786 3.17273 3.57921 3.94290 4.25289 4.52459 4.56309 4.63010 4.85427 5.03462 5.05148 5.06702 5.13370 5.18780 5.24280 5.29404 5.34025 5.40022 5.43818 5.45670 5.51017 5.54655 5.66860 5.74378 5.75656 5.82829 5.85493 5.88251 6.06347 6.12166 6.14977 6.19107 6.20777 6.26100 6.37963 6.42059 6.51900 6.66534 6.85990 7.01186 7.02649 7.13179 7.25142 7.40260 7.47166 7.60414 7.79407 7.97549 8.98300 9.68436 10.70613 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002592 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.063626 B =10799.544562 C =11254.888533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.090 3.910 4 C -0.116 4.116 5 C -0.101 4.101 6 C 0.090 3.910 7 N -0.680 5.680 8 C 0.138 3.862 9 H 0.072 0.928 10 C -0.130 4.130 11 C -0.208 4.208 12 C -0.072 4.072 13 C -0.189 4.189 14 C 0.153 3.847 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.275 1.275 24 C -0.231 4.231 25 C -0.065 4.065 26 C -0.112 4.112 27 C -0.138 4.138 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.341 0.659 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.269 0.731 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.685 -9.385 -14.175 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.139 4.139 6 C -0.020 4.020 7 N -0.311 5.311 8 C 0.028 3.972 9 H 0.090 0.910 10 C -0.188 4.188 11 C -0.210 4.210 12 C -0.091 4.091 13 C -0.208 4.208 14 C 0.099 3.901 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.251 4.251 25 C -0.084 4.084 26 C -0.150 4.150 27 C -0.177 4.177 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.162 0.838 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.090 0.910 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.611 -9.882 -14.189 22.637 hybrid contribution 0.628 1.830 0.272 1.954 sum -13.983 -8.053 -13.917 21.308 Atomic orbital electron populations 1.22756 0.81780 1.02494 0.99625 1.87960 1.18886 1.27691 1.94986 1.22129 0.94809 0.84442 0.95437 1.21646 0.94033 1.00591 0.99126 1.21422 0.98437 0.99746 0.94276 1.21445 0.92219 0.94195 0.94121 1.60808 1.03671 1.52658 1.14011 1.20297 0.86978 0.93226 0.96653 0.90959 1.21724 0.98778 0.96564 1.01762 1.19983 1.05602 1.00537 0.94877 1.20342 0.98779 0.97521 0.92440 1.20178 1.03882 0.97089 0.99666 1.19387 0.92400 0.89054 0.89244 1.83977 1.51219 1.38262 1.34739 1.21365 1.17651 1.12943 0.94805 0.89070 1.25293 0.98128 0.98115 0.95017 1.70046 1.40929 1.36283 1.02484 0.85649 0.79462 0.79409 0.78921 1.19117 1.20137 1.20101 1.21162 1.07248 1.03306 0.93360 1.20597 0.95895 0.93896 0.98016 1.21529 0.94788 1.00424 0.98277 1.21984 1.00010 0.99648 0.96030 0.89862 0.94267 0.94402 0.92538 0.91437 0.90868 0.90573 0.92401 0.93899 0.83840 0.92712 0.92762 0.92795 0.87241 0.86611 0.92058 0.85651 0.87721 0.92263 0.90562 0.91017 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.38 -3.84 9.00 -35.23 -0.32 -4.15 16 3 C 0.09 0.83 2.92 -26.73 -0.08 0.75 16 4 C -0.12 -1.10 5.66 -26.73 -0.15 -1.25 16 5 C -0.10 -1.11 5.22 -26.73 -0.14 -1.25 16 6 C 0.09 1.08 2.32 -67.71 -0.16 0.93 16 7 N -0.68 -8.69 6.05 -100.96 -0.61 -9.30 16 8 C 0.14 1.89 2.62 -68.87 -0.18 1.71 16 9 H 0.07 0.98 6.67 -51.93 -0.35 0.63 16 10 C -0.13 -1.67 9.50 37.15 0.35 -1.31 16 11 C -0.21 -3.46 4.81 -104.57 -0.50 -3.96 16 12 C -0.07 -1.26 9.06 -39.61 -0.36 -1.62 16 13 C -0.19 -3.97 9.99 -39.40 -0.39 -4.36 16 14 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 15 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 16 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.23 -5.01 9.17 -39.39 -0.36 -5.38 16 25 C -0.07 -1.19 9.66 -39.61 -0.38 -1.57 16 26 C -0.11 -1.25 5.09 -26.73 -0.14 -1.38 16 27 C -0.14 -1.34 5.63 -26.73 -0.15 -1.49 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 30 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 35 H 0.06 0.65 7.17 -51.93 -0.37 0.27 16 36 H 0.04 0.59 7.83 -51.93 -0.41 0.19 16 37 H 0.34 4.42 5.92 -39.29 -0.23 4.19 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.62 6.52 -52.49 -0.34 1.28 16 42 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 45 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 46 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -30.15 384.91 -9.07 -39.22 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.07 Total: 7.72 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.61 Total: -25.14 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.15 Total: -33.85 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.32 Total: -9.25 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.15 -9.07 -39.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753565773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.614 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds