Wall clock time and date at job start Tue Mar 31 2020 12:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00008 * 2 1 4 4 C 1.53000 * 109.47058 * 209.99670 * 3 2 1 5 5 C 1.52999 * 109.47412 * 299.99752 * 4 3 2 6 6 C 1.53000 * 109.46809 * 300.00447 * 5 4 3 7 7 N 1.46896 * 109.46894 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00605 * 80.75711 * 7 6 5 9 9 H 1.09005 * 109.46689 * 329.11368 * 8 7 6 10 10 C 1.52993 * 109.47408 * 209.11837 * 8 7 6 11 11 C 1.50701 * 109.47181 * 89.11272 * 8 7 6 12 12 C 1.38301 * 119.93217 * 39.73037 * 11 8 7 13 13 C 1.38091 * 120.06827 * 179.72582 * 12 11 8 14 14 C 1.38875 * 119.93408 * 0.54342 * 13 12 11 15 15 O 1.35754 * 120.07542 * 179.74781 * 14 13 12 16 16 C 1.34826 * 117.00303 * 174.11634 * 15 14 13 17 17 H 1.08000 * 119.99778 * 5.09419 * 16 15 14 18 18 C 1.38656 * 119.99780 * 185.08931 * 16 15 14 19 19 N 1.31551 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99782 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46896 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47316 * 120.00136 * 20 18 16 23 23 H 1.48498 * 109.47079 * 240.00224 * 20 18 16 24 24 C 1.38881 * 119.85912 * 359.73651 * 14 13 12 25 25 C 1.38101 * 119.93279 * 359.97438 * 24 14 13 26 26 C 1.53000 * 109.47498 * 59.99605 * 6 5 4 27 27 C 1.52993 * 109.47367 * 89.99388 * 3 2 1 28 28 H 1.08998 * 109.46919 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47609 * 300.00370 * 1 2 3 30 30 H 1.09000 * 109.46875 * 60.00936 * 1 2 3 31 31 H 1.09005 * 109.46528 * 329.99442 * 3 2 1 32 32 H 1.09000 * 109.47099 * 60.00268 * 4 3 2 33 33 H 1.08997 * 109.46643 * 179.97438 * 4 3 2 34 34 H 1.08997 * 109.46870 * 59.99494 * 5 4 3 35 35 H 1.08997 * 109.47239 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47104 * 299.99729 * 6 5 4 37 37 H 1.00906 * 111.00073 * 204.71074 * 7 6 5 38 38 H 1.09003 * 109.47073 * 184.98417 * 10 8 7 39 39 H 1.09001 * 109.47213 * 304.98013 * 10 8 7 40 40 H 1.08998 * 109.47855 * 64.98323 * 10 8 7 41 41 H 1.08002 * 119.96022 * 0.02562 * 12 11 8 42 42 H 1.08007 * 120.03421 * 180.27409 * 13 12 11 43 43 H 0.97004 * 119.99887 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.03443 * 179.97438 * 24 14 13 45 45 H 1.07995 * 119.96908 * 180.02562 * 25 24 14 46 46 H 1.09003 * 109.47154 * 180.02562 * 26 6 5 47 47 H 1.09002 * 109.46842 * 59.99963 * 26 6 5 48 48 H 1.09002 * 109.47323 * 180.02562 * 27 3 2 49 49 H 1.09005 * 109.47499 * 300.00543 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2632 -0.7212 5 6 4.2928 0.2893 0.0001 6 6 4.5000 0.7553 1.4426 7 7 5.3971 -0.1794 2.1350 8 6 6.8020 0.0997 1.8088 9 1 6.8671 0.5029 0.7982 10 6 7.6124 -1.1951 1.8944 11 6 7.3548 1.1040 2.7870 12 6 7.0129 1.0248 4.1247 13 6 7.5224 1.9402 5.0244 14 6 8.3698 2.9479 4.5829 15 8 8.8682 3.8525 5.4640 16 6 9.7786 4.7283 4.9931 17 1 10.0190 4.7436 3.9403 18 6 10.4062 5.6094 5.8605 19 7 10.1137 5.5904 7.1430 20 14 11.6672 6.8233 5.2080 21 1 11.8147 6.6434 3.7413 22 1 11.2145 8.2086 5.4932 23 1 12.9743 6.5835 5.8706 24 6 8.7066 3.0283 3.2379 25 6 8.1986 2.1063 2.3441 26 6 3.1513 0.7975 2.1638 27 6 2.2175 1.7715 1.4424 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.3449 1.9993 -0.5140 32 1 3.2112 0.9313 -1.7489 33 1 3.8020 2.2591 -0.7215 34 1 3.8494 -0.7064 0.0002 35 1 5.2537 0.2596 -0.5134 36 1 4.9433 1.7511 1.4426 37 1 5.2456 -0.1544 3.1323 38 1 8.6684 -0.9737 1.7396 39 1 7.4760 -1.6448 2.8779 40 1 7.2705 -1.8894 1.1269 41 1 6.3507 0.2432 4.4668 42 1 7.2585 1.8752 6.0698 43 1 10.5530 6.2066 7.7498 44 1 9.3651 3.8111 2.8914 45 1 8.4605 2.1680 1.2982 46 1 3.2990 1.1300 3.1913 47 1 2.7080 -0.1983 2.1638 48 1 2.6605 2.7675 1.4424 49 1 1.2567 1.8015 1.9563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753565773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:45 Heat of formation + Delta-G solvation = -81.690766 kcal Electronic energy + Delta-G solvation = -27064.584397 eV Core-core repulsion = 23376.810821 eV Total energy + Delta-G solvation = -3687.773576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.05799 -40.37769 -39.05812 -37.46587 -35.53967 -34.23650 -32.23256 -31.78029 -31.63148 -29.50263 -28.42359 -27.37598 -27.15426 -24.22525 -23.60802 -23.52303 -22.49701 -21.27689 -20.48959 -19.76826 -18.86410 -17.37227 -17.07705 -16.80848 -16.59096 -16.23339 -16.19186 -16.04537 -15.55735 -15.38853 -14.96312 -14.81260 -14.45805 -14.32539 -14.12814 -14.05347 -13.66233 -13.55406 -13.44579 -13.21767 -13.13259 -13.00275 -12.77929 -12.54240 -12.37348 -12.28476 -12.14585 -12.06846 -11.99625 -11.70955 -11.48564 -11.34772 -11.20112 -11.02009 -10.80419 -10.32595 -9.83093 -9.35189 -8.91180 -8.49140 -6.17252 0.54874 0.66020 1.33545 1.41757 1.51837 2.15825 2.79014 2.92750 3.12308 3.26911 3.48818 3.76062 3.84967 3.93626 4.05184 4.11284 4.13970 4.30021 4.32674 4.41241 4.46510 4.52846 4.54359 4.61352 4.64266 4.64453 4.66347 4.71247 4.74143 4.87893 4.94565 4.98929 5.03666 5.07816 5.09955 5.11508 5.19333 5.26450 5.31023 5.33157 5.36937 5.43052 5.54909 5.57167 5.68835 5.71622 6.00723 6.18025 6.26743 6.38414 6.52792 6.95706 7.76527 8.74339 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.002592 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.063626 B =10799.544562 C =11254.888533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.090 3.910 4 C -0.116 4.116 5 C -0.094 4.094 6 C 0.091 3.909 7 N -0.675 5.675 8 C 0.143 3.857 9 H 0.083 0.917 10 C -0.128 4.128 11 C -0.180 4.180 12 C -0.064 4.064 13 C -0.199 4.199 14 C 0.112 3.888 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.239 4.239 25 C -0.065 4.065 26 C -0.108 4.108 27 C -0.138 4.138 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.027 0.973 37 H 0.340 0.660 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.117 0.883 45 H 0.138 0.862 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.597 -10.554 -17.105 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.032 3.968 4 C -0.154 4.154 5 C -0.132 4.132 6 C -0.019 4.019 7 N -0.307 5.307 8 C 0.033 3.967 9 H 0.101 0.899 10 C -0.185 4.185 11 C -0.182 4.182 12 C -0.082 4.082 13 C -0.219 4.219 14 C 0.062 3.938 15 O -0.140 6.140 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.258 4.258 25 C -0.083 4.083 26 C -0.146 4.146 27 C -0.176 4.176 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.161 0.839 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.160 0.840 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.560 -11.099 -17.160 25.686 hybrid contribution 0.676 1.900 1.021 2.260 sum -14.884 -9.199 -16.140 23.804 Atomic orbital electron populations 1.22909 0.80470 1.03369 1.00401 1.87930 1.20427 1.28153 1.95075 1.22147 0.95037 0.84613 0.95007 1.21659 0.93874 1.00404 0.99417 1.21344 0.98769 0.99537 0.93570 1.21481 0.92314 0.93118 0.94959 1.60867 1.03100 1.52669 1.14040 1.20371 0.87458 0.92847 0.96037 0.89870 1.21699 0.98551 0.96009 1.02291 1.20505 1.02885 0.99674 0.95170 1.20678 0.98215 0.96991 0.92317 1.20414 1.03756 0.97274 1.00420 1.19922 0.93906 0.89871 0.90145 1.83942 1.53115 1.40253 1.36655 1.21840 1.18081 1.13408 0.95516 0.88201 1.26594 1.00277 1.00059 0.95177 1.70188 1.43296 1.38231 1.04196 0.84529 0.76267 0.76462 0.78939 1.17494 1.19284 1.19317 1.21252 1.07484 1.04083 0.92984 1.20954 0.95305 0.92973 0.99080 1.21476 0.94629 1.00519 0.98011 1.21986 0.99974 0.99115 0.96528 0.89053 0.93843 0.93239 0.90990 0.90583 0.90385 0.91639 0.92338 0.95454 0.83905 0.92711 0.92942 0.91221 0.83982 0.87011 0.91830 0.86489 0.84443 0.92940 0.91104 0.91120 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.40 -7.20 9.00 -148.98 -1.34 -8.54 16 3 C 0.09 1.44 2.92 30.59 0.09 1.53 16 4 C -0.12 -1.90 5.66 30.59 0.17 -1.72 16 5 C -0.09 -1.84 5.22 30.59 0.16 -1.68 16 6 C 0.09 1.98 2.32 44.92 0.10 2.09 16 7 N -0.68 -15.31 6.05 -473.32 -2.87 -18.18 16 8 C 0.14 3.42 2.62 44.17 0.12 3.54 16 9 H 0.08 1.91 6.67 -2.38 -0.02 1.89 16 10 C -0.13 -2.80 9.50 71.98 0.68 -2.12 16 11 C -0.18 -5.55 4.81 -19.83 -0.10 -5.64 16 12 C -0.06 -2.12 9.06 22.25 0.20 -1.92 16 13 C -0.20 -8.52 9.99 22.39 0.22 -8.30 16 14 C 0.11 5.60 6.65 22.58 0.15 5.75 16 15 O -0.23 -14.14 9.76 -22.74 -0.22 -14.36 16 16 C -0.41 -24.18 9.49 67.92 0.64 -23.53 16 17 H 0.10 5.40 5.21 -2.91 -0.02 5.38 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 19 N -0.92 -56.85 13.67 21.61 0.30 -56.55 16 20 Si 1.02 43.04 29.55 68.60 2.03 45.07 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 C -0.24 -10.44 9.17 22.39 0.21 -10.23 16 25 C -0.06 -2.22 9.66 22.25 0.21 -2.01 16 26 C -0.11 -2.22 5.09 30.59 0.16 -2.07 16 27 C -0.14 -2.41 5.63 30.59 0.17 -2.23 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.49 7.87 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16 31 H 0.07 0.95 7.79 -2.38 -0.02 0.93 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.45 7.68 -2.39 -0.02 1.43 16 35 H 0.06 1.13 7.17 -2.39 -0.02 1.11 16 36 H 0.03 0.70 7.83 -2.39 -0.02 0.68 16 37 H 0.34 7.85 5.92 -89.69 -0.53 7.32 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.14 3.81 6.52 -2.91 -0.02 3.80 16 42 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.12 5.23 5.64 -2.91 -0.02 5.21 16 45 H 0.14 3.84 8.03 -2.91 -0.02 3.82 16 46 H 0.05 1.13 8.12 -2.39 -0.02 1.11 16 47 H 0.07 1.54 7.68 -2.39 -0.02 1.52 16 48 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.07 1.12 7.87 -2.38 -0.02 1.10 16 Total: -1.00 -69.35 384.91 3.19 -66.16 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.40 Total: 34.31 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 4.89 Total: -47.91 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -2.57 Total: -74.73 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.56 Total: -22.91 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.35 3.19 -66.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753565773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.532 kcal (2) G-P(sol) polarization free energy of solvation -69.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds