Wall clock time and date at job start Tue Mar 31 2020 12:41:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.46884 * 2 1
4 4 N 1.46509 * 109.47114 * 240.00759 * 2 1 3
5 5 C 1.46499 * 119.99457 * 309.14455 * 4 2 1
6 6 C 1.34771 * 120.00115 * 128.87287 * 4 2 1
7 7 O 1.21279 * 119.99900 * 359.97438 * 6 4 2
8 8 C 1.50704 * 119.99941 * 179.97438 * 6 4 2
9 9 C 1.50694 * 109.47330 * 179.97438 * 8 6 4
10 10 C 1.38323 * 119.96799 * 269.72622 * 9 8 6
11 11 C 1.38275 * 120.14059 * 179.76252 * 10 9 8
12 12 C 1.38129 * 120.06916 * 0.50905 * 11 10 9
13 13 C 1.38854 * 119.92504 * 359.74694 * 12 11 10
14 14 O 1.35757 * 120.06560 * 179.97438 * 13 12 11
15 15 C 1.34831 * 116.99813 * 5.57316 * 14 13 12
16 16 H 1.07997 * 120.00198 * 4.73158 * 15 14 13
17 17 C 1.38653 * 119.99727 * 184.74145 * 15 14 13
18 18 N 1.31563 * 120.00169 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14
20 20 H 1.48493 * 109.47627 * 90.00242 * 19 17 15
21 21 H 1.48510 * 109.47186 * 210.00371 * 19 17 15
22 22 H 1.48503 * 109.47147 * 329.99870 * 19 17 15
23 23 C 1.38080 * 119.96792 * 89.99818 * 9 8 6
24 24 C 1.52999 * 109.47574 * 120.00456 * 2 1 3
25 25 C 1.53004 * 109.46935 * 182.60537 * 24 2 1
26 26 C 1.53001 * 109.46550 * 302.60075 * 24 2 1
27 27 C 1.52997 * 109.47197 * 62.60233 * 24 2 1
28 28 H 1.09008 * 109.46589 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47247 * 299.99472 * 1 2 3
30 30 H 1.08996 * 109.47556 * 59.99827 * 1 2 3
31 31 H 1.09006 * 109.47095 * 96.04415 * 5 4 2
32 32 H 1.09003 * 109.47204 * 216.03931 * 5 4 2
33 33 H 1.08998 * 109.47552 * 336.04129 * 5 4 2
34 34 H 1.09001 * 109.46994 * 299.99903 * 8 6 4
35 35 H 1.09003 * 109.47170 * 59.99729 * 8 6 4
36 36 H 1.08001 * 119.92554 * 359.97438 * 10 9 8
37 37 H 1.08001 * 119.96894 * 180.25478 * 11 10 9
38 38 H 1.07995 * 120.03747 * 179.72013 * 12 11 10
39 39 H 0.97000 * 120.00085 * 179.97438 * 18 17 15
40 40 H 1.08005 * 120.02971 * 359.95685 * 23 9 8
41 41 H 1.08996 * 109.47491 * 59.99969 * 25 24 2
42 42 H 1.09000 * 109.46504 * 179.97438 * 25 24 2
43 43 H 1.08994 * 109.46952 * 299.99435 * 25 24 2
44 44 H 1.09002 * 109.46845 * 60.00426 * 26 24 2
45 45 H 1.09009 * 109.46694 * 179.97438 * 26 24 2
46 46 H 1.08996 * 109.47576 * 299.99847 * 26 24 2
47 47 H 1.08996 * 109.47181 * 69.24252 * 27 24 2
48 48 H 1.08998 * 109.46968 * 189.24505 * 27 24 2
49 49 H 1.08998 * 109.46870 * 309.24237 * 27 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6905 -1.1963
5 6 1.5073 -2.0214 -1.5337
6 6 2.9336 -0.0990 -1.9894
7 8 3.3526 1.0050 -1.7129
8 6 3.4363 -0.8096 -3.2196
9 6 4.4439 0.0605 -3.9258
10 6 4.0266 0.9504 -4.8990
11 6 4.9475 1.7540 -5.5458
12 6 6.2889 1.6628 -5.2290
13 6 6.7115 0.7666 -4.2562
14 8 8.0292 0.6742 -3.9430
15 6 8.8610 1.5593 -4.5283
16 1 8.4612 2.3455 -5.1514
17 6 10.2297 1.4599 -4.3303
18 7 11.0415 2.3232 -4.9018
19 14 10.9212 0.1002 -3.2521
20 1 11.2057 -1.0958 -4.0850
21 1 12.1769 0.5670 -2.6111
22 1 9.9309 -0.2514 -2.2028
23 6 5.7834 -0.0354 -3.6046
24 6 2.0401 -0.7213 1.2491
25 6 3.5687 -0.6647 1.2822
26 6 1.4773 -0.0389 2.4975
27 6 1.5843 -2.1815 1.2168
28 1 -0.3633 -1.0278 -0.0005
29 1 -0.3634 0.5137 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 0.6967 -1.9269 -2.2564
32 1 2.3098 -2.6203 -1.9642
33 1 1.1352 -2.5071 -0.6317
34 1 3.9069 -1.7491 -2.9298
35 1 2.6003 -1.0132 -3.8888
36 1 2.9790 1.0202 -5.1519
37 1 4.6182 2.4508 -6.3024
38 1 7.0082 2.2874 -5.7377
39 1 11.9990 2.2539 -4.7630
40 1 6.1090 -0.7331 -2.8472
41 1 3.8934 0.3755 1.3053
42 1 3.9321 -1.1782 2.1724
43 1 3.9696 -1.1508 0.3929
44 1 0.3883 -0.0792 2.4739
45 1 1.8404 -0.5531 3.3875
46 1 1.8020 1.0013 2.5206
47 1 2.1133 -2.7097 0.4235
48 1 1.8035 -2.6518 2.1753
49 1 0.5116 -2.2231 1.0284
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000760329054.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:45
Heat of formation + Delta-G solvation = -30.445887 kcal
Electronic energy + Delta-G solvation = -27516.360670 eV
Core-core repulsion = 23830.809238 eV
Total energy + Delta-G solvation = -3685.551431 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.60890 -39.14206 -37.99594 -36.49176 -34.58039 -32.39231 -32.10745 -30.61624
-29.36788 -28.73573 -27.61778 -26.79336 -26.07457 -25.11520 -23.39378 -21.74057
-20.91463 -19.49837 -18.69024 -17.65248 -17.14691 -16.95510 -16.27935 -15.76966
-15.22980 -15.01897 -14.75741 -14.43444 -14.13847 -13.86105 -13.81990 -13.60174
-13.31813 -13.30603 -12.88811 -12.83966 -12.50640 -12.45404 -12.39830 -12.27522
-12.10540 -11.86410 -11.73777 -11.64770 -11.42572 -11.25209 -10.92389 -10.81354
-10.78421 -10.73789 -10.68726 -10.63250 -10.10335 -9.58984 -9.34966 -8.81617
-8.64060 -8.07359 -7.29396 -6.35655 -4.01928 2.07826 2.35283 2.77408
2.99561 3.25879 3.28669 3.44681 4.28837 4.34889 4.49080 4.54531
4.66135 4.77925 4.86252 4.93250 5.04406 5.05170 5.10672 5.13147
5.15376 5.28763 5.33662 5.38789 5.39786 5.45983 5.53820 5.56041
5.62978 5.68118 5.72302 5.74478 5.75451 5.80220 5.89080 5.90717
6.05672 6.11759 6.18632 6.25551 6.31978 6.52158 6.60052 6.85498
7.17035 7.28306 7.35338 7.39016 7.67225 7.86932 8.10576 8.31865
9.00058 9.63621 10.72399
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016238 B = 0.003163 C = 0.002841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1723.890700 B = 8848.955923 C = 9852.484094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.145 3.855
3 H 0.100 0.900
4 N -0.614 5.614
5 C 0.048 3.952
6 C 0.515 3.485
7 O -0.518 6.518
8 C -0.092 4.092
9 C -0.034 4.034
10 C -0.188 4.188
11 C -0.076 4.076
12 C -0.218 4.218
13 C 0.160 3.840
14 O -0.220 6.220
15 C -0.387 4.387
16 H 0.106 0.894
17 C 0.062 3.938
18 N -0.882 5.882
19 Si 0.904 3.096
20 H -0.274 1.274
21 H -0.282 1.282
22 H -0.260 1.260
23 C -0.174 4.174
24 C -0.077 4.077
25 C -0.138 4.138
26 C -0.142 4.142
27 C -0.157 4.157
28 H 0.061 0.939
29 H 0.069 0.931
30 H 0.058 0.942
31 H 0.051 0.949
32 H 0.069 0.931
33 H 0.099 0.901
34 H 0.097 0.903
35 H 0.097 0.903
36 H 0.104 0.896
37 H 0.110 0.890
38 H 0.132 0.868
39 H 0.278 0.722
40 H 0.112 0.888
41 H 0.058 0.942
42 H 0.052 0.948
43 H 0.054 0.946
44 H 0.058 0.942
45 H 0.056 0.944
46 H 0.057 0.943
47 H 0.071 0.929
48 H 0.053 0.947
49 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.919 -10.584 10.337 27.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.042 3.958
3 H 0.118 0.882
4 N -0.349 5.349
5 C -0.095 4.095
6 C 0.303 3.697
7 O -0.392 6.392
8 C -0.132 4.132
9 C -0.035 4.035
10 C -0.207 4.207
11 C -0.094 4.094
12 C -0.237 4.237
13 C 0.109 3.891
14 O -0.125 6.125
15 C -0.463 4.463
16 H 0.123 0.877
17 C -0.140 4.140
18 N -0.521 5.521
19 Si 0.730 3.270
20 H -0.199 1.199
21 H -0.208 1.208
22 H -0.184 1.184
23 C -0.193 4.193
24 C -0.078 4.078
25 C -0.195 4.195
26 C -0.199 4.199
27 C -0.213 4.213
28 H 0.080 0.920
29 H 0.088 0.912
30 H 0.077 0.923
31 H 0.069 0.931
32 H 0.087 0.913
33 H 0.117 0.883
34 H 0.115 0.885
35 H 0.115 0.885
36 H 0.122 0.878
37 H 0.128 0.872
38 H 0.150 0.850
39 H 0.089 0.911
40 H 0.130 0.870
41 H 0.077 0.923
42 H 0.071 0.929
43 H 0.073 0.927
44 H 0.077 0.923
45 H 0.075 0.925
46 H 0.076 0.924
47 H 0.089 0.911
48 H 0.072 0.928
49 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -22.313 -10.055 10.595 26.669
hybrid contribution 0.425 -0.441 0.242 0.658
sum -21.888 -10.496 10.836 26.584
Atomic orbital electron populations
1.22241 0.95105 1.02313 1.02490 1.21054 0.93566 0.97799 0.83391
0.88230 1.47859 1.42968 1.18456 1.25586 1.22447 0.99820 0.84388
1.02799 1.20725 0.78391 0.86321 0.84239 1.90744 1.56258 1.19790
1.72415 1.20619 0.99025 0.98867 0.94668 1.18685 0.92113 0.96722
0.95949 1.20406 0.98250 1.00805 1.01227 1.20732 0.92805 0.97561
0.98326 1.21293 0.96384 1.03859 1.02168 1.19011 0.84418 0.93324
0.92381 1.83576 1.13325 1.53167 1.62471 1.20760 0.87511 1.07997
1.29985 0.87706 1.24448 0.94588 0.97878 0.97113 1.69652 1.04162
1.35726 1.42535 0.86194 0.78437 0.81264 0.81092 1.19945 1.20810
1.18374 1.19915 0.91292 1.04296 1.03835 1.20883 0.96457 0.95632
0.94872 1.21805 0.93842 1.02402 1.01457 1.21923 1.00762 1.00716
0.96539 1.22381 1.01007 0.95802 1.02127 0.92048 0.91177 0.92326
0.93053 0.91275 0.88303 0.88501 0.88515 0.87828 0.87218 0.85014
0.91146 0.86954 0.92305 0.92918 0.92660 0.92285 0.92491 0.92378
0.91083 0.92762 0.92106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.21 8.35 37.16 0.31 -0.90 16
2 C 0.15 1.44 2.10 -67.93 -0.14 1.30 16
3 H 0.10 1.29 6.95 -51.93 -0.36 0.93 16
4 N -0.61 -6.42 2.16 -173.92 -0.38 -6.79 16
5 C 0.05 0.33 7.93 59.85 0.47 0.80 16
6 C 0.52 7.40 7.29 -10.99 -0.08 7.32 16
7 O -0.52 -9.91 15.38 5.56 0.09 -9.83 16
8 C -0.09 -1.21 4.46 -29.04 -0.13 -1.34 16
9 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16
10 C -0.19 -3.38 9.70 -39.54 -0.38 -3.76 16
11 C -0.08 -1.47 10.04 -39.61 -0.40 -1.87 16
12 C -0.22 -4.98 9.14 -39.39 -0.36 -5.34 16
13 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16
14 O -0.22 -6.05 8.59 0.02 0.00 -6.05 16
15 C -0.39 -11.29 9.91 30.89 0.31 -10.98 16
16 H 0.11 3.13 5.51 -52.49 -0.29 2.84 16
17 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16
18 N -0.88 -26.14 13.96 55.48 0.77 -25.36 16
19 Si 0.90 22.27 28.62 -169.99 -4.86 17.41 16
20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16
22 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16
23 C -0.17 -3.67 9.65 -39.40 -0.38 -4.05 16
24 C -0.08 -0.67 0.62 -154.51 -0.10 -0.76 16
25 C -0.14 -1.51 8.29 37.16 0.31 -1.21 16
26 C -0.14 -1.05 8.04 37.16 0.30 -0.76 16
27 C -0.16 -1.05 6.66 37.16 0.25 -0.80 16
28 H 0.06 0.37 5.50 -51.92 -0.29 0.08 16
29 H 0.07 0.45 6.38 -51.93 -0.33 0.12 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
32 H 0.07 0.43 6.70 -51.93 -0.35 0.08 16
33 H 0.10 0.53 3.36 -51.93 -0.17 0.36 16
34 H 0.10 1.08 7.37 -51.93 -0.38 0.70 16
35 H 0.10 1.01 8.04 -51.93 -0.42 0.59 16
36 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16
37 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16
38 H 0.13 3.13 5.70 -52.49 -0.30 2.83 16
39 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16
40 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16
41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
43 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16
44 H 0.06 0.36 6.38 -51.93 -0.33 0.03 16
45 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16
46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
47 H 0.07 0.48 5.50 -51.93 -0.29 0.19 16
48 H 0.05 0.35 8.12 -51.93 -0.42 -0.07 16
49 H 0.06 0.33 5.55 -51.93 -0.29 0.04 16
LS Contribution 378.50 15.07 5.70 5.70
Total: -1.00 -33.41 378.50 -7.05 -40.46
By element:
Atomic # 1 Polarization: 10.08 SS G_CDS: -7.54 Total: 2.54 kcal
Atomic # 6 Polarization: -17.23 SS G_CDS: -0.84 Total: -18.07 kcal
Atomic # 7 Polarization: -32.56 SS G_CDS: 0.40 Total: -32.16 kcal
Atomic # 8 Polarization: -15.97 SS G_CDS: 0.09 Total: -15.88 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.41 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.41 -7.05 -40.46 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000760329054.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.011 kcal
(2) G-P(sol) polarization free energy of solvation -33.405 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.446 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds