Wall clock time and date at job start Tue Mar 31 2020 12:41:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.46884 * 2 1
4 4 N 1.46509 * 109.47114 * 240.00759 * 2 1 3
5 5 C 1.46499 * 119.99457 * 309.14455 * 4 2 1
6 6 C 1.34771 * 120.00115 * 128.87287 * 4 2 1
7 7 O 1.21279 * 119.99900 * 359.97438 * 6 4 2
8 8 C 1.50704 * 119.99941 * 179.97438 * 6 4 2
9 9 C 1.50694 * 109.47330 * 179.97438 * 8 6 4
10 10 C 1.38323 * 119.96799 * 269.72622 * 9 8 6
11 11 C 1.38275 * 120.14059 * 179.76252 * 10 9 8
12 12 C 1.38129 * 120.06916 * 0.50905 * 11 10 9
13 13 C 1.38854 * 119.92504 * 359.74694 * 12 11 10
14 14 O 1.35757 * 120.06560 * 179.97438 * 13 12 11
15 15 C 1.34831 * 116.99813 * 5.57316 * 14 13 12
16 16 H 1.07997 * 120.00198 * 4.73158 * 15 14 13
17 17 C 1.38653 * 119.99727 * 184.74145 * 15 14 13
18 18 N 1.31563 * 120.00169 * 179.97438 * 17 15 14
19 19 Si 1.86800 * 120.00154 * 359.97438 * 17 15 14
20 20 H 1.48493 * 109.47627 * 90.00242 * 19 17 15
21 21 H 1.48510 * 109.47186 * 210.00371 * 19 17 15
22 22 H 1.48503 * 109.47147 * 329.99870 * 19 17 15
23 23 C 1.38080 * 119.96792 * 89.99818 * 9 8 6
24 24 C 1.52999 * 109.47574 * 120.00456 * 2 1 3
25 25 C 1.53004 * 109.46935 * 182.60537 * 24 2 1
26 26 C 1.53001 * 109.46550 * 302.60075 * 24 2 1
27 27 C 1.52997 * 109.47197 * 62.60233 * 24 2 1
28 28 H 1.09008 * 109.46589 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47247 * 299.99472 * 1 2 3
30 30 H 1.08996 * 109.47556 * 59.99827 * 1 2 3
31 31 H 1.09006 * 109.47095 * 96.04415 * 5 4 2
32 32 H 1.09003 * 109.47204 * 216.03931 * 5 4 2
33 33 H 1.08998 * 109.47552 * 336.04129 * 5 4 2
34 34 H 1.09001 * 109.46994 * 299.99903 * 8 6 4
35 35 H 1.09003 * 109.47170 * 59.99729 * 8 6 4
36 36 H 1.08001 * 119.92554 * 359.97438 * 10 9 8
37 37 H 1.08001 * 119.96894 * 180.25478 * 11 10 9
38 38 H 1.07995 * 120.03747 * 179.72013 * 12 11 10
39 39 H 0.97000 * 120.00085 * 179.97438 * 18 17 15
40 40 H 1.08005 * 120.02971 * 359.95685 * 23 9 8
41 41 H 1.08996 * 109.47491 * 59.99969 * 25 24 2
42 42 H 1.09000 * 109.46504 * 179.97438 * 25 24 2
43 43 H 1.08994 * 109.46952 * 299.99435 * 25 24 2
44 44 H 1.09002 * 109.46845 * 60.00426 * 26 24 2
45 45 H 1.09009 * 109.46694 * 179.97438 * 26 24 2
46 46 H 1.08996 * 109.47576 * 299.99847 * 26 24 2
47 47 H 1.08996 * 109.47181 * 69.24252 * 27 24 2
48 48 H 1.08998 * 109.46968 * 189.24505 * 27 24 2
49 49 H 1.08998 * 109.46870 * 309.24237 * 27 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6905 -1.1963
5 6 1.5073 -2.0214 -1.5337
6 6 2.9336 -0.0990 -1.9894
7 8 3.3526 1.0050 -1.7129
8 6 3.4363 -0.8096 -3.2196
9 6 4.4439 0.0605 -3.9258
10 6 4.0266 0.9504 -4.8990
11 6 4.9475 1.7540 -5.5458
12 6 6.2889 1.6628 -5.2290
13 6 6.7115 0.7666 -4.2562
14 8 8.0292 0.6742 -3.9430
15 6 8.8610 1.5593 -4.5283
16 1 8.4612 2.3455 -5.1514
17 6 10.2297 1.4599 -4.3303
18 7 11.0415 2.3232 -4.9018
19 14 10.9212 0.1002 -3.2521
20 1 11.2057 -1.0958 -4.0850
21 1 12.1769 0.5670 -2.6111
22 1 9.9309 -0.2514 -2.2028
23 6 5.7834 -0.0354 -3.6046
24 6 2.0401 -0.7213 1.2491
25 6 3.5687 -0.6647 1.2822
26 6 1.4773 -0.0389 2.4975
27 6 1.5843 -2.1815 1.2168
28 1 -0.3633 -1.0278 -0.0005
29 1 -0.3634 0.5137 0.8900
30 1 -0.3634 0.5138 -0.8899
31 1 0.6967 -1.9269 -2.2564
32 1 2.3098 -2.6203 -1.9642
33 1 1.1352 -2.5071 -0.6317
34 1 3.9069 -1.7491 -2.9298
35 1 2.6003 -1.0132 -3.8888
36 1 2.9790 1.0202 -5.1519
37 1 4.6182 2.4508 -6.3024
38 1 7.0082 2.2874 -5.7377
39 1 11.9990 2.2539 -4.7630
40 1 6.1090 -0.7331 -2.8472
41 1 3.8934 0.3755 1.3053
42 1 3.9321 -1.1782 2.1724
43 1 3.9696 -1.1508 0.3929
44 1 0.3883 -0.0792 2.4739
45 1 1.8404 -0.5531 3.3875
46 1 1.8020 1.0013 2.5206
47 1 2.1133 -2.7097 0.4235
48 1 1.8035 -2.6518 2.1753
49 1 0.5116 -2.2231 1.0284
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000760329054.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:41:44
Heat of formation + Delta-G solvation = -50.079541 kcal
Electronic energy + Delta-G solvation = -27517.212049 eV
Core-core repulsion = 23830.809238 eV
Total energy + Delta-G solvation = -3686.402810 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.57652 -40.80594 -39.14069 -38.11464 -35.45653 -34.49664 -33.50125 -31.45076
-31.02953 -29.39405 -28.68940 -27.77306 -27.16566 -26.73921 -24.28864 -23.33780
-22.47539 -20.61591 -19.64145 -19.46030 -18.79373 -18.08322 -17.14504 -16.90503
-16.71133 -16.49862 -15.89980 -15.72722 -15.51662 -15.24177 -15.06823 -14.87736
-14.49895 -14.37092 -14.16155 -14.01354 -13.90839 -13.63110 -13.33102 -13.17785
-13.04703 -12.94054 -12.83003 -12.62384 -12.50598 -12.45085 -12.37720 -12.32998
-12.09787 -11.94502 -11.64819 -11.47991 -11.36554 -11.33591 -10.93636 -10.68278
-9.67398 -9.46950 -9.08333 -8.52099 -6.24822 0.47290 0.68109 1.27685
1.32724 1.49294 1.71699 2.10697 2.26313 2.75479 3.04686 3.10200
3.63808 3.76052 3.84178 3.97262 4.00610 4.05562 4.26840 4.34655
4.39245 4.40672 4.42885 4.50476 4.53805 4.60374 4.68000 4.70717
4.74016 4.79565 4.82204 4.89762 4.94231 5.00961 5.02935 5.07676
5.09501 5.15120 5.22701 5.23353 5.33617 5.37797 5.44135 5.56754
5.63159 5.70671 5.73712 5.76079 5.89558 6.22718 6.48163 6.82100
7.30350 7.56917 8.60004
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016238 B = 0.003163 C = 0.002841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1723.890700 B = 8848.955923 C = 9852.484094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.141 3.859
3 H 0.059 0.941
4 N -0.602 5.602
5 C 0.036 3.964
6 C 0.510 3.490
7 O -0.581 6.581
8 C -0.088 4.088
9 C -0.027 4.027
10 C -0.172 4.172
11 C -0.077 4.077
12 C -0.241 4.241
13 C 0.120 3.880
14 O -0.247 6.247
15 C -0.400 4.400
16 H 0.078 0.922
17 C 0.010 3.990
18 N -0.924 5.924
19 Si 0.971 3.029
20 H -0.261 1.261
21 H -0.265 1.265
22 H -0.267 1.267
23 C -0.181 4.181
24 C -0.073 4.073
25 C -0.136 4.136
26 C -0.140 4.140
27 C -0.154 4.154
28 H 0.085 0.915
29 H 0.080 0.920
30 H 0.050 0.950
31 H 0.072 0.928
32 H 0.081 0.919
33 H 0.118 0.882
34 H 0.122 0.878
35 H 0.138 0.862
36 H 0.146 0.854
37 H 0.141 0.859
38 H 0.107 0.893
39 H 0.285 0.715
40 H 0.118 0.882
41 H 0.027 0.973
42 H 0.063 0.937
43 H 0.039 0.961
44 H 0.078 0.922
45 H 0.063 0.937
46 H 0.041 0.959
47 H 0.073 0.927
48 H 0.060 0.940
49 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.941 -13.869 11.331 32.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.037 3.963
3 H 0.078 0.922
4 N -0.335 5.335
5 C -0.105 4.105
6 C 0.299 3.701
7 O -0.461 6.461
8 C -0.128 4.128
9 C -0.027 4.027
10 C -0.190 4.190
11 C -0.095 4.095
12 C -0.260 4.260
13 C 0.071 3.929
14 O -0.155 6.155
15 C -0.476 4.476
16 H 0.096 0.904
17 C -0.188 4.188
18 N -0.565 5.565
19 Si 0.793 3.207
20 H -0.186 1.186
21 H -0.189 1.189
22 H -0.192 1.192
23 C -0.200 4.200
24 C -0.074 4.074
25 C -0.194 4.194
26 C -0.198 4.198
27 C -0.210 4.210
28 H 0.104 0.896
29 H 0.098 0.902
30 H 0.069 0.931
31 H 0.090 0.910
32 H 0.099 0.901
33 H 0.135 0.865
34 H 0.140 0.860
35 H 0.156 0.844
36 H 0.164 0.836
37 H 0.159 0.841
38 H 0.125 0.875
39 H 0.095 0.905
40 H 0.136 0.864
41 H 0.046 0.954
42 H 0.082 0.918
43 H 0.058 0.942
44 H 0.097 0.903
45 H 0.082 0.918
46 H 0.060 0.940
47 H 0.092 0.908
48 H 0.079 0.921
49 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -26.411 -13.385 11.588 31.796
hybrid contribution 1.328 0.588 -0.076 1.454
sum -25.083 -12.796 11.513 30.421
Atomic orbital electron populations
1.22192 0.92553 1.03886 1.02693 1.21103 0.95397 0.95974 0.83787
0.92241 1.47899 1.41377 1.19501 1.24698 1.22811 1.00883 0.82297
1.04505 1.20922 0.78676 0.85670 0.84825 1.90738 1.58722 1.22566
1.74049 1.20726 0.99083 0.98390 0.94554 1.19240 0.91789 0.96477
0.95211 1.20985 0.99947 0.98648 0.99409 1.21110 0.91343 0.98182
0.98869 1.21316 0.97898 1.04064 1.02704 1.19582 0.83901 0.95298
0.94130 1.83510 1.14625 1.53490 1.63848 1.20702 0.88450 1.08335
1.30150 0.90440 1.25288 0.94647 1.00368 0.98542 1.69734 1.04742
1.37607 1.44429 0.85215 0.77834 0.78542 0.79084 1.18564 1.18938
1.19186 1.20226 0.92298 1.03910 1.03609 1.20857 0.94424 0.97422
0.94747 1.21796 0.96170 1.00248 1.01145 1.21919 1.01951 0.99728
0.96175 1.22375 1.02272 0.93626 1.02757 0.89626 0.90166 0.93082
0.90974 0.90060 0.86451 0.86003 0.84400 0.83598 0.84146 0.87476
0.90520 0.86352 0.95399 0.91838 0.94233 0.90300 0.91776 0.93950
0.90849 0.92097 0.89958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.79 8.35 71.98 0.60 -1.19 16
2 C 0.14 2.57 2.10 44.99 0.09 2.66 16
3 H 0.06 1.59 6.95 -2.39 -0.02 1.57 16
4 N -0.60 -10.94 2.16 -822.57 -1.78 -12.72 16
5 C 0.04 0.31 7.93 127.77 1.01 1.33 16
6 C 0.51 13.67 7.29 87.66 0.64 14.31 16
7 O -0.58 -22.46 15.38 -3.03 -0.05 -22.51 16
8 C -0.09 -1.99 4.46 29.10 0.13 -1.86 16
9 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16
10 C -0.17 -5.68 9.70 22.30 0.22 -5.47 16
11 C -0.08 -2.93 10.04 22.25 0.22 -2.71 16
12 C -0.24 -11.55 9.14 22.39 0.20 -11.35 16
13 C 0.12 6.11 6.65 22.57 0.15 6.26 16
14 O -0.25 -14.39 8.59 -22.83 -0.20 -14.58 16
15 C -0.40 -24.97 9.91 67.92 0.67 -24.29 16
16 H 0.08 5.08 5.51 -2.91 -0.02 5.06 16
17 C 0.01 0.58 5.49 84.83 0.47 1.05 16
18 N -0.92 -57.27 13.96 21.61 0.30 -56.97 16
19 Si 0.97 47.43 28.62 68.60 1.96 49.39 16
20 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16
21 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16
22 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16
23 C -0.18 -7.71 9.65 22.39 0.22 -7.49 16
24 C -0.07 -1.13 0.62 -52.18 -0.03 -1.16 16
25 C -0.14 -2.99 8.29 71.98 0.60 -2.40 16
26 C -0.14 -1.83 8.04 71.98 0.58 -1.25 16
27 C -0.15 -1.44 6.66 71.98 0.48 -0.96 16
28 H 0.09 0.58 5.50 -2.38 -0.01 0.57 16
29 H 0.08 0.78 6.38 -2.39 -0.02 0.77 16
30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16
32 H 0.08 0.57 6.70 -2.39 -0.02 0.56 16
33 H 0.12 0.63 3.36 -2.39 -0.01 0.62 16
34 H 0.12 2.20 7.37 -2.39 -0.02 2.18 16
35 H 0.14 2.03 8.04 -2.39 -0.02 2.01 16
36 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16
37 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16
38 H 0.11 5.59 5.70 -2.91 -0.02 5.57 16
39 H 0.29 16.13 8.31 -92.71 -0.77 15.36 16
40 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16
41 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16
42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
43 H 0.04 0.97 7.38 -2.39 -0.02 0.95 16
44 H 0.08 0.72 6.38 -2.39 -0.02 0.71 16
45 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16
46 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16
47 H 0.07 0.67 5.50 -2.39 -0.01 0.66 16
48 H 0.06 0.54 8.12 -2.39 -0.02 0.52 16
49 H 0.08 0.44 5.55 -2.39 -0.01 0.43 16
Total: -1.00 -80.74 378.50 7.36 -73.39
By element:
Atomic # 1 Polarization: 18.57 SS G_CDS: 0.95 Total: 19.52 kcal
Atomic # 6 Polarization: -41.67 SS G_CDS: 6.16 Total: -35.51 kcal
Atomic # 7 Polarization: -68.22 SS G_CDS: -1.47 Total: -69.69 kcal
Atomic # 8 Polarization: -36.85 SS G_CDS: -0.24 Total: -37.09 kcal
Atomic # 14 Polarization: 47.43 SS G_CDS: 1.96 Total: 49.39 kcal
Total: -80.74 7.36 -73.39 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000760329054.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.306 kcal
(2) G-P(sol) polarization free energy of solvation -80.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.435 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.356 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds