Wall clock time and date at job start Tue Mar 31 2020 12:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00319 * 2 1 4 4 C 1.52994 * 110.05827 * 180.71876 * 3 2 1 5 5 H 1.08998 * 109.47069 * 178.58693 * 4 3 2 6 6 C 1.52998 * 109.47581 * 58.58043 * 4 3 2 7 7 N 1.46908 * 109.47011 * 298.58034 * 4 3 2 8 8 C 1.46894 * 111.00142 * 205.00226 * 7 4 3 9 9 C 1.50699 * 109.47362 * 179.97438 * 8 7 4 10 10 C 1.38302 * 119.93252 * 269.72916 * 9 8 7 11 11 C 1.38099 * 120.06696 * 179.72545 * 10 9 8 12 12 C 1.38871 * 119.93149 * 0.56183 * 11 10 9 13 13 O 1.35749 * 120.06967 * 179.68320 * 12 11 10 14 14 C 1.34831 * 117.00097 * 174.48754 * 13 12 11 15 15 H 1.07999 * 120.00248 * 5.06379 * 14 13 12 16 16 C 1.38656 * 119.99872 * 185.05909 * 14 13 12 17 17 N 1.31559 * 119.99784 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00126 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47054 * 90.00109 * 18 16 14 20 20 H 1.48498 * 109.47207 * 209.99763 * 18 16 14 21 21 H 1.48496 * 109.47474 * 330.00464 * 18 16 14 22 22 C 1.38882 * 119.86242 * 359.71245 * 12 11 10 23 23 C 1.38093 * 119.93089 * 359.97438 * 22 12 11 24 24 C 1.54273 * 110.03062 * 302.13266 * 3 2 1 25 25 C 1.54890 * 104.19470 * 95.67379 * 24 3 2 26 26 C 1.54889 * 102.74929 * 37.94134 * 25 24 3 27 27 C 1.53875 * 110.03229 * 59.29741 * 3 2 1 28 28 H 1.09006 * 109.47374 * 59.99578 * 1 2 3 29 29 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46915 * 300.00629 * 1 2 3 31 31 H 1.08995 * 109.46953 * 300.00415 * 6 4 3 32 32 H 1.09005 * 109.46614 * 60.00105 * 6 4 3 33 33 H 1.08995 * 109.47650 * 180.02562 * 6 4 3 34 34 H 1.00901 * 110.99748 * 81.04915 * 7 4 3 35 35 H 1.09007 * 109.47096 * 300.00225 * 8 7 4 36 36 H 1.09002 * 109.47361 * 60.00111 * 8 7 4 37 37 H 1.07999 * 119.96315 * 359.97253 * 10 9 8 38 38 H 1.08003 * 120.03192 * 180.27144 * 11 10 9 39 39 H 0.96997 * 119.99972 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03415 * 179.97438 * 22 12 11 41 41 H 1.08001 * 119.96781 * 180.02562 * 23 22 12 42 42 H 1.08998 * 110.48420 * 214.35309 * 24 3 2 43 43 H 1.09001 * 110.48686 * 336.99509 * 24 3 2 44 44 H 1.09009 * 110.75674 * 279.62692 * 25 24 3 45 45 H 1.09003 * 110.75610 * 156.26025 * 25 24 3 46 46 H 1.09002 * 110.48457 * 203.37719 * 26 25 24 47 47 H 1.08994 * 110.59920 * 80.79313 * 26 25 24 48 48 H 1.08998 * 110.03000 * 0.02562 * 27 3 2 49 49 H 1.08998 * 110.03051 * 121.38566 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5365 1.2003 -0.0180 5 1 3.9693 2.2003 -0.0432 6 6 3.9795 0.4213 -1.2581 7 7 3.9933 0.4994 1.1895 8 6 5.3736 0.8735 1.5250 9 6 5.8062 0.1369 2.7665 10 6 5.6006 0.7029 4.0116 11 6 5.9908 0.0278 5.1514 12 6 6.6006 -1.2153 5.0459 13 8 6.9911 -1.8785 6.1642 14 6 7.4715 -3.1274 5.9989 15 1 7.6086 -3.5261 5.0046 16 6 7.7897 -3.8999 7.1055 17 7 8.2590 -5.1183 6.9442 18 14 7.5522 -3.2106 8.8253 19 1 6.1838 -3.5336 9.3034 20 1 8.5522 -3.8135 9.7428 21 1 7.7314 -1.7368 8.7971 22 6 6.8108 -1.7785 3.7939 23 6 6.4125 -1.1014 2.6582 24 6 1.5210 2.1018 -1.2274 25 6 0.3260 2.9290 -0.6917 26 6 0.7977 3.3313 0.7277 27 6 1.5504 2.0872 1.2430 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5466 -0.5787 -1.2328 32 1 3.6405 0.9414 -2.1541 33 1 5.0668 0.3460 -1.2707 34 1 3.9054 -0.5001 1.0825 35 1 6.0327 0.6103 0.6977 36 1 5.4258 1.9476 1.7036 37 1 5.1309 1.6720 4.0927 38 1 5.8261 0.4684 6.1237 39 1 8.4812 -5.6589 7.7183 40 1 7.2852 -2.7450 3.7086 41 1 6.5753 -1.5389 1.6843 42 1 2.3082 2.7612 -1.5928 43 1 1.1931 1.4243 -2.0158 44 1 -0.5750 2.3176 -0.6406 45 1 0.1602 3.8123 -1.3086 46 1 -0.0581 3.5511 1.3660 47 1 1.4675 4.1899 0.6802 48 1 0.8842 1.4707 1.8464 49 1 2.4145 2.3909 1.8339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817579919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:06 Heat of formation + Delta-G solvation = -54.016661 kcal Electronic energy + Delta-G solvation = -27029.305641 eV Core-core repulsion = 23342.732104 eV Total energy + Delta-G solvation = -3686.573537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.31089 -39.16694 -37.24403 -35.80638 -35.28734 -32.44566 -31.60732 -30.20560 -29.29440 -28.61178 -27.54716 -26.25679 -25.55935 -23.98180 -22.14899 -21.83087 -21.00778 -20.39845 -19.66026 -17.85579 -17.27948 -16.74065 -16.34441 -15.49691 -15.24271 -15.01743 -14.74921 -14.50016 -14.26359 -14.12793 -13.87267 -13.71808 -13.45392 -13.14503 -12.96088 -12.77705 -12.62284 -12.45710 -12.26249 -12.15381 -11.88196 -11.73932 -11.45760 -11.34334 -11.28117 -11.21822 -11.00154 -10.93356 -10.73737 -10.66719 -10.60402 -10.34594 -10.12630 -9.52519 -9.35777 -8.84824 -8.28080 -8.18913 -7.27959 -6.39670 -4.06139 2.17812 2.22696 3.23536 3.27417 3.42051 3.68274 4.08616 4.25625 4.37528 4.43004 4.56577 4.74780 4.83635 4.90073 5.05139 5.13053 5.14622 5.17866 5.20493 5.25793 5.30290 5.34241 5.38547 5.42840 5.44870 5.54325 5.57019 5.63470 5.66108 5.67639 5.74236 5.82885 5.86484 5.89173 5.96729 6.07934 6.16676 6.18234 6.28559 6.38635 6.61725 6.83124 7.01811 7.12757 7.25848 7.29884 7.33527 7.56266 7.65356 7.82838 8.06491 8.95849 9.58892 10.68109 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002449 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.537696 B =11430.879612 C =11590.074567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.368 6.368 3 C 0.129 3.871 4 C 0.102 3.898 5 H 0.085 0.915 6 C -0.181 4.181 7 N -0.673 5.673 8 C 0.115 3.885 9 C -0.173 4.173 10 C -0.054 4.054 11 C -0.194 4.194 12 C 0.161 3.839 13 O -0.219 6.219 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.881 5.881 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.221 4.221 23 C -0.067 4.067 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.139 4.139 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.349 0.651 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.279 0.721 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.072 0.928 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.119 15.728 -16.571 26.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.287 6.287 3 C 0.089 3.911 4 C -0.009 4.009 5 H 0.103 0.897 6 C -0.240 4.240 7 N -0.304 5.304 8 C -0.013 4.013 9 C -0.174 4.174 10 C -0.073 4.073 11 C -0.213 4.213 12 C 0.109 3.891 13 O -0.124 6.124 14 C -0.464 4.464 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.184 1.184 22 C -0.240 4.240 23 C -0.086 4.086 24 C -0.188 4.188 25 C -0.169 4.169 26 C -0.165 4.165 27 C -0.177 4.177 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.180 15.865 -15.775 26.488 hybrid contribution 0.262 -0.322 -0.039 0.417 sum -13.918 15.544 -15.814 26.180 Atomic orbital electron populations 1.22833 0.82114 1.02140 0.99962 1.87959 1.18927 1.27111 1.94700 1.22154 0.92657 0.83064 0.93256 1.21561 0.91907 0.98307 0.89104 0.89689 1.22465 1.01063 1.01862 0.98632 1.60595 1.22150 1.13191 1.34461 1.20681 0.87809 0.98760 0.94035 1.19181 1.07304 0.97014 0.93951 1.20448 0.97295 0.98361 0.91207 1.20212 1.07065 0.95379 0.98694 1.19136 0.91887 0.91601 0.86483 1.83573 1.71168 1.28617 1.28997 1.20767 1.42205 0.86668 0.96796 0.87663 1.24468 0.95673 0.94453 0.99444 1.69648 1.42165 1.08031 1.32039 0.86178 0.78266 0.80325 0.82114 1.19886 1.20826 1.18367 1.21233 1.08159 1.02740 0.91895 1.20643 0.96849 0.93808 0.97256 1.23012 0.98468 0.99149 0.98148 1.22681 0.97907 0.99674 0.96676 1.22406 0.99833 0.98258 0.96035 1.22644 1.01161 0.95988 0.97880 0.94053 0.90207 0.93832 0.91493 0.92420 0.92804 0.83128 0.95378 0.91312 0.86973 0.86656 0.91087 0.85084 0.87680 0.90653 0.90916 0.91292 0.91646 0.91830 0.91643 0.90952 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.38 101.05 0.95 1.18 16 2 O -0.37 -4.12 9.56 -35.23 -0.34 -4.46 16 3 C 0.13 1.24 0.59 -89.50 -0.05 1.19 16 4 C 0.10 1.02 1.62 -67.71 -0.11 0.91 16 5 H 0.09 0.80 7.77 -51.93 -0.40 0.40 16 6 C -0.18 -1.72 8.81 37.16 0.33 -1.39 16 7 N -0.67 -8.25 5.50 -107.99 -0.59 -8.84 16 8 C 0.12 1.48 5.61 -4.98 -0.03 1.45 16 9 C -0.17 -2.83 5.40 -104.57 -0.56 -3.40 16 10 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 11 C -0.19 -3.89 9.99 -39.40 -0.39 -4.29 16 12 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 13 O -0.22 -5.84 8.59 0.05 0.00 -5.84 16 14 C -0.39 -11.07 9.95 30.89 0.31 -10.76 16 15 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 16 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 17 N -0.88 -25.67 13.96 55.48 0.77 -24.89 16 18 Si 0.91 21.89 28.62 -169.99 -4.86 17.03 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.26 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.22 -4.80 9.17 -39.40 -0.36 -5.16 16 23 C -0.07 -1.20 9.69 -39.61 -0.38 -1.59 16 24 C -0.15 -1.16 4.34 -25.07 -0.11 -1.27 16 25 C -0.13 -0.92 6.37 -24.74 -0.16 -1.08 16 26 C -0.13 -0.99 6.83 -25.07 -0.17 -1.16 16 27 C -0.14 -1.36 5.44 -25.61 -0.14 -1.50 16 28 H 0.04 0.31 5.45 -51.93 -0.28 0.02 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.37 6.34 -51.93 -0.33 0.04 16 31 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.06 0.48 7.27 -51.93 -0.38 0.10 16 33 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 34 H 0.35 4.73 8.46 -39.29 -0.33 4.40 16 35 H 0.03 0.34 7.38 -51.93 -0.38 -0.04 16 36 H 0.07 0.82 7.99 -51.93 -0.42 0.40 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 39 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.13 3.00 5.64 -52.48 -0.30 2.71 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.07 0.54 7.75 -51.93 -0.40 0.14 16 43 H 0.07 0.57 7.53 -51.93 -0.39 0.18 16 44 H 0.07 0.46 6.06 -51.92 -0.31 0.15 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 49 H 0.08 0.92 7.37 -51.93 -0.38 0.54 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -29.35 379.56 -8.73 -38.09 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.81 Total: 6.20 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -1.63 Total: -23.01 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.18 Total: -33.73 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.34 Total: -10.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.86 Total: 17.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.35 -8.73 -38.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817579919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.929 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds