Wall clock time and date at job start Tue Mar 31 2020 12:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00319 * 2 1 4 4 C 1.52994 * 110.05827 * 180.71876 * 3 2 1 5 5 H 1.08998 * 109.47069 * 178.58693 * 4 3 2 6 6 C 1.52998 * 109.47581 * 58.58043 * 4 3 2 7 7 N 1.46908 * 109.47011 * 298.58034 * 4 3 2 8 8 C 1.46894 * 111.00142 * 205.00226 * 7 4 3 9 9 C 1.50699 * 109.47362 * 179.97438 * 8 7 4 10 10 C 1.38302 * 119.93252 * 269.72916 * 9 8 7 11 11 C 1.38099 * 120.06696 * 179.72545 * 10 9 8 12 12 C 1.38871 * 119.93149 * 0.56183 * 11 10 9 13 13 O 1.35749 * 120.06967 * 179.68320 * 12 11 10 14 14 C 1.34831 * 117.00097 * 174.48754 * 13 12 11 15 15 H 1.07999 * 120.00248 * 5.06379 * 14 13 12 16 16 C 1.38656 * 119.99872 * 185.05909 * 14 13 12 17 17 N 1.31559 * 119.99784 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00126 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47054 * 90.00109 * 18 16 14 20 20 H 1.48498 * 109.47207 * 209.99763 * 18 16 14 21 21 H 1.48496 * 109.47474 * 330.00464 * 18 16 14 22 22 C 1.38882 * 119.86242 * 359.71245 * 12 11 10 23 23 C 1.38093 * 119.93089 * 359.97438 * 22 12 11 24 24 C 1.54273 * 110.03062 * 302.13266 * 3 2 1 25 25 C 1.54890 * 104.19470 * 95.67379 * 24 3 2 26 26 C 1.54889 * 102.74929 * 37.94134 * 25 24 3 27 27 C 1.53875 * 110.03229 * 59.29741 * 3 2 1 28 28 H 1.09006 * 109.47374 * 59.99578 * 1 2 3 29 29 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46915 * 300.00629 * 1 2 3 31 31 H 1.08995 * 109.46953 * 300.00415 * 6 4 3 32 32 H 1.09005 * 109.46614 * 60.00105 * 6 4 3 33 33 H 1.08995 * 109.47650 * 180.02562 * 6 4 3 34 34 H 1.00901 * 110.99748 * 81.04915 * 7 4 3 35 35 H 1.09007 * 109.47096 * 300.00225 * 8 7 4 36 36 H 1.09002 * 109.47361 * 60.00111 * 8 7 4 37 37 H 1.07999 * 119.96315 * 359.97253 * 10 9 8 38 38 H 1.08003 * 120.03192 * 180.27144 * 11 10 9 39 39 H 0.96997 * 119.99972 * 180.02562 * 17 16 14 40 40 H 1.08006 * 120.03415 * 179.97438 * 22 12 11 41 41 H 1.08001 * 119.96781 * 180.02562 * 23 22 12 42 42 H 1.08998 * 110.48420 * 214.35309 * 24 3 2 43 43 H 1.09001 * 110.48686 * 336.99509 * 24 3 2 44 44 H 1.09009 * 110.75674 * 279.62692 * 25 24 3 45 45 H 1.09003 * 110.75610 * 156.26025 * 25 24 3 46 46 H 1.09002 * 110.48457 * 203.37719 * 26 25 24 47 47 H 1.08994 * 110.59920 * 80.79313 * 26 25 24 48 48 H 1.08998 * 110.03000 * 0.02562 * 27 3 2 49 49 H 1.08998 * 110.03051 * 121.38566 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5365 1.2003 -0.0180 5 1 3.9693 2.2003 -0.0432 6 6 3.9795 0.4213 -1.2581 7 7 3.9933 0.4994 1.1895 8 6 5.3736 0.8735 1.5250 9 6 5.8062 0.1369 2.7665 10 6 5.6006 0.7029 4.0116 11 6 5.9908 0.0278 5.1514 12 6 6.6006 -1.2153 5.0459 13 8 6.9911 -1.8785 6.1642 14 6 7.4715 -3.1274 5.9989 15 1 7.6086 -3.5261 5.0046 16 6 7.7897 -3.8999 7.1055 17 7 8.2590 -5.1183 6.9442 18 14 7.5522 -3.2106 8.8253 19 1 6.1838 -3.5336 9.3034 20 1 8.5522 -3.8135 9.7428 21 1 7.7314 -1.7368 8.7971 22 6 6.8108 -1.7785 3.7939 23 6 6.4125 -1.1014 2.6582 24 6 1.5210 2.1018 -1.2274 25 6 0.3260 2.9290 -0.6917 26 6 0.7977 3.3313 0.7277 27 6 1.5504 2.0872 1.2430 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.5466 -0.5787 -1.2328 32 1 3.6405 0.9414 -2.1541 33 1 5.0668 0.3460 -1.2707 34 1 3.9054 -0.5001 1.0825 35 1 6.0327 0.6103 0.6977 36 1 5.4258 1.9476 1.7036 37 1 5.1309 1.6720 4.0927 38 1 5.8261 0.4684 6.1237 39 1 8.4812 -5.6589 7.7183 40 1 7.2852 -2.7450 3.7086 41 1 6.5753 -1.5389 1.6843 42 1 2.3082 2.7612 -1.5928 43 1 1.1931 1.4243 -2.0158 44 1 -0.5750 2.3176 -0.6406 45 1 0.1602 3.8123 -1.3086 46 1 -0.0581 3.5511 1.3660 47 1 1.4675 4.1899 0.6802 48 1 0.8842 1.4707 1.8464 49 1 2.4145 2.3909 1.8339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817579919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:05 Heat of formation + Delta-G solvation = -71.340780 kcal Electronic energy + Delta-G solvation = -27030.056871 eV Core-core repulsion = 23342.732104 eV Total energy + Delta-G solvation = -3687.324767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08542 -40.81009 -38.74767 -36.92218 -35.99081 -34.47675 -32.78414 -31.78751 -30.21139 -29.60464 -28.29359 -27.40662 -26.93186 -25.32588 -23.67313 -22.75961 -21.92082 -21.55113 -20.44360 -19.79451 -19.09790 -17.47175 -17.24129 -16.70569 -16.30959 -16.09507 -15.98603 -15.80993 -15.62490 -15.43251 -15.09972 -14.92262 -14.80282 -14.36863 -14.15754 -14.01051 -13.82133 -13.65062 -13.55988 -13.05358 -12.94339 -12.85503 -12.66000 -12.45841 -12.37106 -12.17670 -12.08896 -11.93546 -11.92192 -11.86141 -11.69796 -11.39438 -11.26454 -11.12293 -10.89697 -10.24505 -9.77949 -9.24254 -8.93283 -8.50127 -6.22562 0.59664 0.64990 1.30920 1.35377 1.51852 2.28131 2.73953 2.97911 3.02435 3.16622 3.41362 3.71575 3.81106 3.95502 4.04803 4.07262 4.18293 4.22595 4.36420 4.44991 4.49800 4.51281 4.54359 4.61433 4.62288 4.68535 4.72788 4.77224 4.80578 4.82923 4.90016 4.92929 4.99827 5.00490 5.02867 5.13144 5.25237 5.28113 5.30396 5.38537 5.39829 5.50177 5.54189 5.59931 5.77955 5.83417 5.92270 6.17903 6.29004 6.50057 6.52418 6.84379 7.59587 8.61693 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022529 B = 0.002449 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.537696 B =11430.879612 C =11590.074567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.125 3.875 4 C 0.102 3.898 5 H 0.099 0.901 6 C -0.175 4.175 7 N -0.679 5.679 8 C 0.120 3.880 9 C -0.146 4.146 10 C -0.048 4.048 11 C -0.193 4.193 12 C 0.119 3.881 13 O -0.246 6.246 14 C -0.399 4.399 15 H 0.080 0.920 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.972 3.028 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.263 1.263 22 C -0.238 4.238 23 C -0.068 4.068 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.124 4.124 27 C -0.138 4.138 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.340 0.660 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.285 0.715 40 H 0.105 0.895 41 H 0.129 0.871 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.688 19.087 -18.090 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C 0.086 3.914 4 C -0.008 4.008 5 H 0.117 0.883 6 C -0.234 4.234 7 N -0.309 5.309 8 C -0.008 4.008 9 C -0.147 4.147 10 C -0.067 4.067 11 C -0.213 4.213 12 C 0.070 3.930 13 O -0.154 6.154 14 C -0.475 4.475 15 H 0.097 0.903 16 C -0.189 4.189 17 N -0.566 5.566 18 Si 0.794 3.206 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.257 4.257 23 C -0.086 4.086 24 C -0.183 4.183 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.176 4.176 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.159 0.841 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.168 0.832 38 H 0.145 0.855 39 H 0.094 0.906 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.768 19.260 -17.335 30.333 hybrid contribution 0.612 -1.177 0.126 1.333 sum -15.156 18.083 -17.209 29.204 Atomic orbital electron populations 1.22923 0.81164 1.02602 1.00582 1.87924 1.20116 1.28206 1.94885 1.22243 0.92329 0.82769 0.94092 1.21655 0.92313 0.98591 0.88202 0.88337 1.22392 1.00943 1.01085 0.99005 1.60568 1.21448 1.12767 1.36161 1.20697 0.88474 0.99292 0.92374 1.19683 1.03734 0.95720 0.95574 1.20900 0.96046 0.99446 0.90291 1.20530 1.06068 0.94102 1.00556 1.19680 0.93975 0.93026 0.86311 1.83513 1.73496 1.27931 1.30459 1.20704 1.42767 0.87946 0.96103 0.90296 1.25295 0.95558 0.94752 1.03344 1.69733 1.44136 1.09337 1.33352 0.85202 0.78763 0.79249 0.77403 1.19122 1.19118 1.18685 1.21237 1.09066 1.02340 0.93053 1.20911 0.96322 0.94391 0.97010 1.22979 0.99062 0.99077 0.97200 1.22677 0.97560 1.00102 0.96270 1.22384 0.99855 0.97456 0.96455 1.22603 1.00589 0.96682 0.97710 0.92647 0.89959 0.93922 0.93033 0.91016 0.92726 0.84134 0.94114 0.89194 0.83187 0.85540 0.90586 0.87712 0.85271 0.89598 0.90972 0.91213 0.90258 0.91541 0.90928 0.92543 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.38 113.37 1.06 1.44 16 2 O -0.39 -8.18 9.56 -148.98 -1.42 -9.60 16 3 C 0.13 2.11 0.59 -10.07 -0.01 2.10 16 4 C 0.10 1.74 1.62 44.91 0.07 1.81 16 5 H 0.10 1.44 7.77 -2.39 -0.02 1.42 16 6 C -0.18 -2.85 8.81 71.98 0.63 -2.22 16 7 N -0.68 -14.68 5.50 -495.58 -2.73 -17.41 16 8 C 0.12 2.60 5.61 85.56 0.48 3.08 16 9 C -0.15 -4.37 5.40 -19.83 -0.11 -4.47 16 10 C -0.05 -1.51 9.69 22.25 0.22 -1.30 16 11 C -0.19 -7.57 9.99 22.39 0.22 -7.34 16 12 C 0.12 5.71 6.65 22.58 0.15 5.86 16 13 O -0.25 -13.73 8.59 -22.75 -0.20 -13.92 16 14 C -0.40 -24.07 9.95 67.92 0.68 -23.40 16 15 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 16 C 0.01 0.51 5.49 84.83 0.47 0.97 16 17 N -0.92 -56.24 13.96 21.61 0.30 -55.94 16 18 Si 0.97 46.33 28.62 68.60 1.96 48.30 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 23 C -0.07 -2.38 9.69 22.25 0.22 -2.16 16 24 C -0.15 -1.80 4.34 31.67 0.14 -1.67 16 25 C -0.13 -1.39 6.37 31.89 0.20 -1.19 16 26 C -0.12 -1.56 6.83 31.67 0.22 -1.35 16 27 C -0.14 -2.38 5.44 31.32 0.17 -2.21 16 28 H 0.06 0.71 5.45 -2.38 -0.01 0.70 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 0.68 6.34 -2.39 -0.02 0.66 16 31 H 0.05 1.01 7.66 -2.39 -0.02 0.99 16 32 H 0.07 0.96 7.27 -2.38 -0.02 0.94 16 33 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 34 H 0.34 8.53 8.46 -89.69 -0.76 7.77 16 35 H 0.04 0.82 7.38 -2.38 -0.02 0.81 16 36 H 0.09 1.67 7.99 -2.39 -0.02 1.65 16 37 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 39 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.10 5.22 5.64 -2.91 -0.02 5.21 16 41 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 42 H 0.09 0.90 7.75 -2.39 -0.02 0.88 16 43 H 0.07 0.93 7.53 -2.39 -0.02 0.91 16 44 H 0.07 0.75 6.06 -2.38 -0.01 0.73 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 1.14 6.36 -2.39 -0.02 1.13 16 49 H 0.07 1.41 7.37 -2.39 -0.02 1.39 16 Total: -1.00 -67.09 379.56 3.13 -63.97 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.19 Total: 27.17 kcal Atomic # 6 Polarization: -47.58 SS G_CDS: 5.02 Total: -42.56 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -2.43 Total: -73.35 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.62 Total: -23.52 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.96 Total: 48.30 kcal Total: -67.09 3.13 -63.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817579919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.372 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds