Wall clock time and date at job start Tue Mar 31 2020 12:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53001 * 109.47198 * 119.99779 * 2 1 3 5 5 C 1.53001 * 109.47257 * 64.99944 * 4 2 1 6 6 H 1.09001 * 109.46865 * 305.00447 * 5 4 2 7 7 C 1.53000 * 109.47193 * 184.99812 * 5 4 2 8 8 O 1.45200 * 109.46673 * 64.99780 * 5 4 2 9 9 C 1.34636 * 117.00058 * 209.99975 * 8 5 4 10 10 O 1.21515 * 119.99543 * 0.02562 * 9 8 5 11 11 N 1.34771 * 120.00459 * 180.02562 * 9 8 5 12 12 C 1.46500 * 120.00556 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08996 * 109.46841 * 60.00111 * 1 2 3 30 30 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46556 * 299.99901 * 1 2 3 32 32 H 1.09000 * 109.47380 * 239.99973 * 2 1 3 33 33 H 1.08998 * 109.47473 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47211 * 300.00052 * 3 2 1 35 35 H 1.09001 * 109.47526 * 59.99895 * 3 2 1 36 36 H 1.08997 * 109.47377 * 304.99813 * 4 2 1 37 37 H 1.09000 * 109.47093 * 185.00276 * 4 2 1 38 38 H 1.09000 * 109.46841 * 300.00288 * 7 5 4 39 39 H 1.08993 * 109.47094 * 60.00347 * 7 5 4 40 40 H 1.09001 * 109.46877 * 180.02562 * 7 5 4 41 41 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 42 42 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 43 43 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 44 44 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 45 45 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 46 46 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 47 47 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 48 48 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 49 49 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.0355 -2.8887 2.4920 8 8 2.3087 -2.8362 0.0727 9 6 1.6708 -3.8646 -0.5174 10 8 0.5808 -4.2166 -0.1117 11 7 2.2409 -4.5035 -1.5581 12 6 1.5465 -5.6221 -2.2005 13 1 0.9924 -6.1853 -1.4495 14 6 2.5699 -6.5392 -2.8732 15 6 3.4495 -7.1664 -1.8224 16 1 3.2938 -6.9346 -0.7791 17 6 4.4490 -8.0412 -2.1925 18 7 4.6383 -8.3239 -3.4629 19 14 5.5341 -8.8247 -0.8895 20 1 4.6934 -9.6153 0.0450 21 1 6.5244 -9.7185 -1.5421 22 1 6.2478 -7.7628 -0.1356 23 6 0.5901 -5.0911 -3.2370 24 6 0.9595 -4.0259 -4.0368 25 6 0.0839 -3.5415 -4.9906 26 6 -1.1645 -4.1165 -5.1383 27 6 -1.5358 -5.1784 -4.3348 28 6 -0.6585 -5.6654 -3.3841 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6055 -0.2617 2.1370 37 1 3.1264 -0.6442 1.2952 38 1 3.1144 -2.8134 2.6271 39 1 1.5300 -2.4077 3.3292 40 1 1.7475 -3.9391 2.4481 41 1 3.1109 -4.2223 -1.8822 42 1 3.1837 -5.9565 -3.5602 43 1 2.0493 -7.3214 -3.4254 44 1 5.3417 -8.9390 -3.7233 45 1 1.9332 -3.5740 -3.9187 46 1 0.3742 -2.7122 -5.6186 47 1 -1.8496 -3.7364 -5.8816 48 1 -2.5110 -5.6279 -4.4505 49 1 -0.9486 -6.4951 -2.7564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830924003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:33 Heat of formation + Delta-G solvation = -90.395183 kcal Electronic energy + Delta-G solvation = -27646.743743 eV Core-core repulsion = 23958.592716 eV Total energy + Delta-G solvation = -3688.151028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.21586 -38.96774 -37.41869 -35.77554 -34.89917 -32.80107 -32.01813 -30.84835 -30.42883 -28.77808 -27.30995 -26.76580 -25.04254 -22.60972 -22.25615 -21.92396 -20.85490 -19.92512 -19.78900 -18.34252 -16.85121 -16.32573 -16.12075 -15.77921 -15.33645 -14.88369 -14.78320 -14.56921 -14.37495 -13.91599 -13.63759 -13.17155 -13.05610 -12.97028 -12.91310 -12.54581 -12.45196 -12.36456 -12.16166 -12.10765 -11.84938 -11.55288 -11.41356 -11.14286 -10.99304 -10.91630 -10.74120 -10.72610 -10.63872 -10.50902 -10.39859 -10.15296 -9.95471 -9.79578 -9.33114 -8.57687 -8.49336 -8.45629 -8.20781 -6.09030 -4.12575 1.75499 1.80233 2.69475 3.29884 3.34500 3.37622 3.39451 4.19567 4.40282 4.53669 4.66048 4.77829 4.88129 5.15863 5.21980 5.25020 5.26207 5.27299 5.28014 5.36316 5.47381 5.51975 5.53018 5.60585 5.69895 5.73560 5.79298 5.86742 5.90154 5.91907 5.92954 6.05772 6.11828 6.20675 6.24861 6.29677 6.33860 6.41822 6.53795 6.74660 6.84082 6.84898 6.94719 7.09349 7.39742 7.47721 7.59187 7.87247 8.09136 8.24530 8.92547 8.93003 9.52512 11.01440 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004739 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.281344 B = 5907.445886 C = 8199.154150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.102 3.898 6 H 0.088 0.912 7 C -0.171 4.171 8 O -0.367 6.367 9 C 0.644 3.356 10 O -0.582 6.582 11 N -0.680 5.680 12 C 0.202 3.798 13 H 0.089 0.911 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.075 4.075 24 C -0.106 4.106 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.407 0.593 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.263 0.737 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.532 15.845 4.015 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.047 3.953 6 H 0.106 0.894 7 C -0.229 4.229 8 O -0.282 6.282 9 C 0.397 3.603 10 O -0.472 6.472 11 N -0.336 5.336 12 C 0.099 3.901 13 H 0.107 0.893 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.077 4.077 24 C -0.124 4.124 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.242 0.758 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.947 15.601 4.153 17.995 hybrid contribution 0.998 -0.451 0.516 1.211 sum -6.948 15.150 4.669 17.309 Atomic orbital electron populations 1.21921 0.95327 1.02138 1.01486 1.21112 0.95825 0.96029 0.98835 1.21823 1.00969 0.95909 1.01525 1.21809 1.02232 0.92240 0.98539 1.22640 0.98064 0.91153 0.83488 0.89384 1.22217 1.02411 1.01908 0.96325 1.86291 1.49876 1.45365 1.46690 1.18223 0.82629 0.79088 0.80390 1.90922 1.21289 1.68253 1.66737 1.44791 1.23120 1.34195 1.31520 1.20286 0.92859 0.84897 0.92078 0.89283 1.19419 0.92403 0.93525 0.96016 1.21089 1.15418 1.26327 0.93189 0.92429 1.24972 0.97376 0.96413 0.95258 1.69947 1.32538 1.35328 1.15226 0.86648 0.80278 0.79323 0.81727 1.20203 1.21282 1.20217 1.20552 0.94829 0.95286 0.96989 1.20924 0.99376 0.96677 0.95454 1.21042 0.94380 1.00195 0.98667 1.21003 0.96696 0.97450 1.00025 1.21036 0.99352 0.97247 0.96484 1.21006 0.93195 0.99931 0.98343 0.92758 0.92282 0.92844 0.90503 0.92656 0.92772 0.92897 0.90083 0.90746 0.91758 0.91172 0.91586 0.75837 0.95500 0.94316 0.92782 0.86496 0.86713 0.86827 0.86575 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.96 37.16 0.33 -1.24 16 2 C -0.10 -1.04 2.87 -90.62 -0.26 -1.30 16 3 C -0.14 -1.24 9.19 37.16 0.34 -0.90 16 4 C -0.11 -1.15 4.40 -26.73 -0.12 -1.27 16 5 C 0.10 1.38 2.43 -26.73 -0.06 1.31 16 6 H 0.09 1.29 5.36 -51.93 -0.28 1.01 16 7 C -0.17 -2.12 9.55 37.16 0.35 -1.77 16 8 O -0.37 -6.04 9.39 -40.31 -0.38 -6.42 16 9 C 0.64 12.30 8.68 54.05 0.47 12.77 16 10 O -0.58 -12.41 15.26 -19.28 -0.29 -12.70 16 11 N -0.68 -12.97 4.02 -59.87 -0.24 -13.21 16 12 C 0.20 4.15 2.12 -69.08 -0.15 4.00 16 13 H 0.09 1.98 7.44 -51.92 -0.39 1.59 16 14 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.86 8.84 -34.44 -0.30 -14.17 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 19 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 C -0.08 -1.40 4.91 -104.63 -0.51 -1.92 16 24 C -0.11 -1.80 9.33 -39.58 -0.37 -2.17 16 25 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 26 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 27 C -0.12 -1.84 10.05 -39.59 -0.40 -2.24 16 28 C -0.11 -1.84 9.67 -39.59 -0.38 -2.22 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 6.46 -51.93 -0.34 0.39 16 31 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 32 H 0.08 0.95 7.69 -51.93 -0.40 0.55 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.41 7.34 8.71 -40.82 -0.36 6.99 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.12 1.89 7.71 -52.49 -0.40 1.49 16 46 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 47 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 48 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 49 H 0.12 1.99 8.04 -52.48 -0.42 1.57 16 LS Contribution 403.20 15.07 6.08 6.08 Total: -1.00 -30.27 403.20 -9.66 -39.93 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.46 Total: 8.62 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.08 Total: -13.63 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.50 Total: -38.01 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.67 Total: -19.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.27 -9.66 -39.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830924003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.462 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds