Wall clock time and date at job start Tue Mar 31 2020 12:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47113 * 2 1 4 4 C 1.53001 * 109.47198 * 119.99779 * 2 1 3 5 5 C 1.53001 * 109.47257 * 64.99944 * 4 2 1 6 6 H 1.09001 * 109.46865 * 305.00447 * 5 4 2 7 7 C 1.53000 * 109.47193 * 184.99812 * 5 4 2 8 8 O 1.45200 * 109.46673 * 64.99780 * 5 4 2 9 9 C 1.34636 * 117.00058 * 209.99975 * 8 5 4 10 10 O 1.21515 * 119.99543 * 0.02562 * 9 8 5 11 11 N 1.34771 * 120.00459 * 180.02562 * 9 8 5 12 12 C 1.46500 * 120.00556 * 180.02562 * 11 9 8 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.08996 * 109.46841 * 60.00111 * 1 2 3 30 30 H 1.08994 * 109.46875 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46556 * 299.99901 * 1 2 3 32 32 H 1.09000 * 109.47380 * 239.99973 * 2 1 3 33 33 H 1.08998 * 109.47473 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47211 * 300.00052 * 3 2 1 35 35 H 1.09001 * 109.47526 * 59.99895 * 3 2 1 36 36 H 1.08997 * 109.47377 * 304.99813 * 4 2 1 37 37 H 1.09000 * 109.47093 * 185.00276 * 4 2 1 38 38 H 1.09000 * 109.46841 * 300.00288 * 7 5 4 39 39 H 1.08993 * 109.47094 * 60.00347 * 7 5 4 40 40 H 1.09001 * 109.46877 * 180.02562 * 7 5 4 41 41 H 0.97002 * 120.00072 * 359.97438 * 11 9 8 42 42 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 43 43 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 44 44 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 45 45 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 46 46 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 47 47 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 48 48 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 49 49 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5563 -2.2706 1.0528 7 6 2.0355 -2.8887 2.4920 8 8 2.3087 -2.8362 0.0727 9 6 1.6708 -3.8646 -0.5174 10 8 0.5808 -4.2166 -0.1117 11 7 2.2409 -4.5035 -1.5581 12 6 1.5465 -5.6221 -2.2005 13 1 0.9924 -6.1853 -1.4495 14 6 2.5699 -6.5392 -2.8732 15 6 3.4495 -7.1664 -1.8224 16 1 3.2938 -6.9346 -0.7791 17 6 4.4490 -8.0412 -2.1925 18 7 4.6383 -8.3239 -3.4629 19 14 5.5341 -8.8247 -0.8895 20 1 4.6934 -9.6153 0.0450 21 1 6.5244 -9.7185 -1.5421 22 1 6.2478 -7.7628 -0.1356 23 6 0.5901 -5.0911 -3.2370 24 6 0.9595 -4.0259 -4.0368 25 6 0.0839 -3.5415 -4.9906 26 6 -1.1645 -4.1165 -5.1383 27 6 -1.5358 -5.1784 -4.3348 28 6 -0.6585 -5.6654 -3.3841 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6055 -0.2617 2.1370 37 1 3.1264 -0.6442 1.2952 38 1 3.1144 -2.8134 2.6271 39 1 1.5300 -2.4077 3.3292 40 1 1.7475 -3.9391 2.4481 41 1 3.1109 -4.2223 -1.8822 42 1 3.1837 -5.9565 -3.5602 43 1 2.0493 -7.3214 -3.4254 44 1 5.3417 -8.9390 -3.7233 45 1 1.9332 -3.5740 -3.9187 46 1 0.3742 -2.7122 -5.6186 47 1 -1.8496 -3.7364 -5.8816 48 1 -2.5110 -5.6279 -4.4505 49 1 -0.9486 -6.4951 -2.7564 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830924003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:32 Heat of formation + Delta-G solvation = -105.401111 kcal Electronic energy + Delta-G solvation = -27647.394449 eV Core-core repulsion = 23958.592716 eV Total energy + Delta-G solvation = -3688.801734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66304 -40.26614 -38.61549 -37.02671 -36.40064 -34.78800 -33.21295 -32.17940 -31.68361 -30.54869 -28.06294 -27.66389 -26.84022 -24.03581 -23.77494 -23.24359 -22.04330 -21.31236 -20.84153 -19.82477 -18.64305 -17.88318 -17.52975 -17.20100 -16.63204 -16.24912 -16.12419 -16.06271 -15.38261 -15.12539 -15.01322 -14.58943 -14.22695 -14.19872 -14.11150 -13.95219 -13.69081 -13.58028 -13.48565 -13.11562 -13.05284 -12.94264 -12.72533 -12.65017 -12.49192 -12.35623 -12.17458 -11.94802 -11.89448 -11.68971 -11.61742 -11.52636 -11.39266 -11.35755 -11.18286 -10.59718 -10.14145 -9.76582 -9.55364 -8.21243 -6.31446 0.47347 0.55187 1.30073 1.39816 1.40836 1.49019 1.85398 2.39387 2.93030 3.12088 3.35133 3.63800 3.86313 3.93687 4.00464 4.01286 4.18065 4.20052 4.24833 4.31531 4.36056 4.37254 4.60809 4.64900 4.71580 4.74049 4.76426 4.78567 4.81182 4.85546 4.99369 5.02104 5.05920 5.09796 5.14196 5.18990 5.21192 5.31122 5.38021 5.42068 5.48816 5.52993 5.60016 5.61588 5.63322 5.76196 5.85660 6.14034 6.18580 6.54051 6.79989 7.37051 7.40999 8.89240 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008723 B = 0.004739 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.281344 B = 5907.445886 C = 8199.154150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.103 4.103 5 C 0.092 3.908 6 H 0.074 0.926 7 C -0.168 4.168 8 O -0.367 6.367 9 C 0.647 3.353 10 O -0.608 6.608 11 N -0.678 5.678 12 C 0.219 3.781 13 H 0.064 0.936 14 C 0.038 3.962 15 C -0.533 4.533 16 H 0.051 0.949 17 C 0.014 3.986 18 N -0.924 5.924 19 Si 0.955 3.045 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.129 4.129 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.410 0.590 42 H 0.014 0.986 43 H 0.013 0.987 44 H 0.265 0.735 45 H 0.116 0.884 46 H 0.145 0.855 47 H 0.152 0.848 48 H 0.146 0.854 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 18.000 4.438 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.197 4.197 4 C -0.140 4.140 5 C 0.037 3.963 6 H 0.092 0.908 7 C -0.225 4.225 8 O -0.281 6.281 9 C 0.400 3.600 10 O -0.500 6.500 11 N -0.335 5.335 12 C 0.115 3.885 13 H 0.082 0.918 14 C 0.000 4.000 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.564 5.564 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.103 4.103 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.120 0.880 40 H 0.055 0.945 41 H 0.246 0.754 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.134 0.866 46 H 0.163 0.837 47 H 0.170 0.830 48 H 0.164 0.836 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.366 17.778 4.586 20.176 hybrid contribution 1.058 -1.066 0.368 1.547 sum -7.308 16.712 4.955 18.901 Atomic orbital electron populations 1.21892 0.95331 1.00740 1.02598 1.21100 0.95818 0.97208 0.97791 1.21774 1.01117 0.94347 1.02451 1.21845 1.02763 0.89721 0.99682 1.23042 0.97322 0.93061 0.82848 0.90781 1.22224 1.03207 1.00290 0.96814 1.86305 1.49877 1.44330 1.47568 1.18207 0.82287 0.79362 0.80106 1.90894 1.22472 1.69165 1.67454 1.44648 1.23227 1.33879 1.31746 1.19790 0.92032 0.84849 0.91840 0.91781 1.19153 0.92460 0.93194 0.95163 1.21352 1.15860 1.26517 0.93356 0.93048 1.25746 0.98705 0.96915 0.97182 1.70055 1.33281 1.36047 1.16971 0.85661 0.78562 0.78561 0.79225 1.19913 1.20622 1.19399 1.20421 0.95284 0.96990 0.97640 1.21054 1.00126 0.96563 0.96223 1.21423 0.94248 1.00645 0.97919 1.21483 0.96804 0.96315 0.99822 1.21398 1.00002 0.97262 0.95354 1.21173 0.93533 1.00404 0.99652 0.92487 0.94855 0.90912 0.93117 0.92392 0.92537 0.91305 0.87197 0.90172 0.91030 0.88018 0.94483 0.75420 0.96798 0.96896 0.92633 0.86564 0.83698 0.82987 0.83620 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.96 71.98 0.64 -2.29 16 2 C -0.10 -1.98 2.87 -10.79 -0.03 -2.01 16 3 C -0.14 -2.07 9.19 71.98 0.66 -1.41 16 4 C -0.10 -1.94 4.40 30.59 0.13 -1.81 16 5 C 0.09 2.46 2.43 30.59 0.07 2.53 16 6 H 0.07 2.21 5.36 -2.39 -0.01 2.20 16 7 C -0.17 -4.04 9.55 71.98 0.69 -3.35 16 8 O -0.37 -12.34 9.39 -55.46 -0.52 -12.86 16 9 C 0.65 25.81 8.68 129.79 1.13 26.94 16 10 O -0.61 -27.19 15.26 19.79 0.30 -26.89 16 11 N -0.68 -27.27 4.02 -573.73 -2.31 -29.58 16 12 C 0.22 9.55 2.12 44.24 0.09 9.65 16 13 H 0.06 3.08 7.44 -2.38 -0.02 3.06 16 14 C 0.04 1.91 4.50 29.85 0.13 2.05 16 15 C -0.53 -29.35 8.84 25.60 0.23 -29.12 16 16 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 17 C 0.01 0.75 5.46 84.66 0.46 1.22 16 18 N -0.92 -54.12 13.29 21.45 0.28 -53.84 16 19 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C -0.10 -3.97 4.91 -19.87 -0.10 -4.07 16 24 C -0.12 -4.18 9.33 22.27 0.21 -3.97 16 25 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 26 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 27 C -0.12 -3.48 10.05 22.27 0.22 -3.25 16 28 C -0.13 -4.59 9.67 22.27 0.22 -4.37 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.03 0.82 6.46 -2.39 -0.02 0.81 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.26 7.69 -2.39 -0.02 1.24 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.41 15.60 8.71 -92.71 -0.81 14.80 16 42 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 45 H 0.12 3.88 7.71 -2.91 -0.02 3.86 16 46 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 47 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 48 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 49 H 0.12 4.07 8.04 -2.91 -0.02 4.04 16 Total: -1.00 -67.72 403.20 5.10 -62.62 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.11 Total: 34.18 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.21 Total: -19.54 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -2.02 Total: -83.42 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.22 Total: -39.75 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.72 5.10 -62.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830924003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.783 kcal (2) G-P(sol) polarization free energy of solvation -67.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds