Wall clock time and date at job start Tue Mar 31 2020 12:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 113.99818 * 2 1 4 4 C 1.52998 * 112.85131 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47540 * 189.66492 * 4 3 2 6 6 C 1.53001 * 109.47091 * 69.66544 * 4 3 2 7 7 N 1.46904 * 109.47357 * 309.66691 * 4 3 2 8 8 C 1.46900 * 111.00409 * 204.99697 * 7 4 3 9 9 H 1.09003 * 109.46677 * 324.99873 * 8 7 4 10 10 C 1.52999 * 109.46817 * 84.99873 * 8 7 4 11 11 C 1.50696 * 109.47203 * 205.00280 * 8 7 4 12 12 C 1.38309 * 119.92941 * 319.72547 * 11 8 7 13 13 C 1.38101 * 120.06747 * 179.72806 * 12 11 8 14 14 C 1.38877 * 119.92662 * 0.54751 * 13 12 11 15 15 O 1.35755 * 120.06518 * 179.75010 * 14 13 12 16 16 C 1.34831 * 117.00184 * 174.44309 * 15 14 13 17 17 H 1.08001 * 119.99451 * 5.04781 * 16 15 14 18 18 C 1.38651 * 120.00202 * 185.05563 * 16 15 14 19 19 N 1.31555 * 119.99844 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99961 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.46872 * 90.00155 * 20 18 16 22 22 H 1.48496 * 109.47331 * 210.00124 * 20 18 16 23 23 H 1.48504 * 109.47312 * 330.00273 * 20 18 16 24 24 C 1.38876 * 119.86509 * 359.72601 * 14 13 12 25 25 C 1.38091 * 119.93440 * 359.97438 * 24 14 13 26 26 C 1.53784 * 113.61677 * 48.80198 * 3 2 1 27 27 C 1.53953 * 87.02216 * 220.04831 * 26 3 2 28 28 C 1.53781 * 113.61652 * 311.19392 * 3 2 1 29 29 H 1.09005 * 109.47023 * 60.00813 * 1 2 3 30 30 H 1.09010 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47872 * 300.00087 * 1 2 3 32 32 H 1.09006 * 109.46924 * 60.00158 * 6 4 3 33 33 H 1.08998 * 109.47466 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47349 * 300.00594 * 6 4 3 35 35 H 1.00900 * 110.99888 * 328.95506 * 7 4 3 36 36 H 1.08995 * 109.47252 * 60.00269 * 10 8 7 37 37 H 1.08998 * 109.47093 * 180.02562 * 10 8 7 38 38 H 1.09000 * 109.47335 * 300.00233 * 10 8 7 39 39 H 1.07997 * 119.96128 * 0.02562 * 12 11 8 40 40 H 1.07998 * 120.03525 * 180.27026 * 13 12 11 41 41 H 0.96999 * 119.99553 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.03166 * 179.97438 * 24 14 13 43 43 H 1.07999 * 119.97207 * 180.02562 * 25 24 14 44 44 H 1.09004 * 113.61184 * 334.56983 * 26 3 2 45 45 H 1.08998 * 113.61888 * 105.46921 * 26 3 2 46 46 H 1.09004 * 113.53573 * 270.81109 * 27 26 3 47 47 H 1.08991 * 113.74748 * 139.93778 * 27 26 3 48 48 H 1.09005 * 113.61237 * 254.53088 * 28 3 2 49 49 H 1.09000 * 113.61291 * 25.34646 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5398 1.2748 0.0006 5 1 3.9233 2.2804 0.1731 6 6 4.0402 0.7632 -1.3517 7 7 4.0113 0.3813 1.0671 8 6 5.3661 0.7480 1.5007 9 1 5.9376 1.1049 0.6438 10 6 5.2824 1.8541 2.5544 11 6 6.0482 -0.4586 2.0920 12 6 5.3376 -1.3246 2.9031 13 6 5.9583 -2.4344 3.4420 14 6 7.3005 -2.6741 3.1778 15 8 7.9148 -3.7613 3.7101 16 6 9.1843 -3.9983 3.3224 17 1 9.6940 -3.2929 2.6828 18 6 9.8351 -5.1474 3.7446 19 7 11.0736 -5.3787 3.3658 20 14 8.9535 -6.3671 4.8512 21 1 8.2476 -7.3722 4.0165 22 1 9.9436 -7.0527 5.7200 23 1 7.9684 -5.6461 5.6967 24 6 8.0128 -1.7995 2.3675 25 6 7.3848 -0.6950 1.8266 26 6 1.4128 2.2457 1.0602 27 6 1.4862 3.3584 -0.0013 28 6 1.4129 2.2457 -1.0603 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 3.6904 1.4262 -2.1430 33 1 5.1300 0.7418 -1.3515 34 1 3.6567 -0.2424 -1.5243 35 1 3.3705 0.3789 1.8465 36 1 4.7109 1.4972 3.4112 37 1 6.2876 2.1266 2.8759 38 1 4.7890 2.7269 2.1267 39 1 4.2949 -1.1354 3.1114 40 1 5.4018 -3.1126 4.0717 41 1 11.5290 -6.1825 3.6615 42 1 9.0568 -1.9831 2.1606 43 1 7.9380 -0.0147 1.1961 44 1 0.3949 1.9857 1.3506 45 1 2.0683 2.4126 1.9150 46 1 2.4328 3.8989 -0.0006 47 1 0.6206 4.0207 -0.0034 48 1 2.0686 2.4124 -1.9150 49 1 0.3955 1.9848 -1.3518 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840885068.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:10 Heat of formation + Delta-G solvation = -36.164329 kcal Electronic energy + Delta-G solvation = -27242.085427 eV Core-core repulsion = 23556.286025 eV Total energy + Delta-G solvation = -3685.799402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.48674 -40.85536 -39.02771 -37.10396 -36.18739 -34.44855 -33.14239 -31.80678 -30.00726 -28.98366 -27.97312 -27.23730 -26.57198 -25.44430 -23.99628 -23.70841 -22.50229 -21.29595 -19.68571 -19.50744 -19.05219 -18.21776 -17.19835 -16.68240 -16.30295 -16.08189 -15.98762 -15.67391 -15.54967 -15.38969 -15.10560 -14.99720 -14.62074 -14.33750 -14.18967 -14.08413 -13.85393 -13.80389 -13.36739 -13.10577 -12.99448 -12.95676 -12.73851 -12.54407 -12.50369 -12.38098 -12.26022 -12.01608 -11.97609 -11.77273 -11.68681 -11.51778 -11.23213 -10.89125 -10.83405 -10.19831 -9.74293 -9.22606 -8.89100 -8.48626 -6.20528 0.62813 0.71686 1.31170 1.35922 1.52307 2.29188 2.76238 2.84174 3.05949 3.18068 3.26975 3.52433 3.66465 3.76836 3.90681 3.98921 4.10605 4.18805 4.29976 4.39148 4.42366 4.43629 4.45924 4.55902 4.61666 4.63886 4.73140 4.76007 4.78566 4.87014 4.90817 4.94823 4.98703 5.03189 5.05159 5.06952 5.09513 5.15396 5.28676 5.30609 5.43156 5.45985 5.49999 5.62410 5.79315 5.84842 5.94866 6.21232 6.30927 6.45622 6.60333 6.86201 7.62489 8.63297 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024173 B = 0.002581 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.036915 B =10844.488780 C =11246.061025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.382 6.382 3 C 0.092 3.908 4 C 0.120 3.880 5 H 0.072 0.928 6 C -0.138 4.138 7 N -0.676 5.676 8 C 0.142 3.858 9 H 0.084 0.916 10 C -0.171 4.171 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.194 4.194 14 C 0.116 3.884 15 O -0.248 6.248 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.235 4.235 25 C -0.073 4.073 26 C -0.175 4.175 27 C -0.130 4.130 28 C -0.171 4.171 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.345 0.655 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.284 0.716 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.314 20.172 -7.052 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.301 6.301 3 C 0.052 3.948 4 C 0.011 3.989 5 H 0.089 0.911 6 C -0.196 4.196 7 N -0.308 5.308 8 C 0.032 3.968 9 H 0.103 0.897 10 C -0.230 4.230 11 C -0.130 4.130 12 C -0.066 4.066 13 C -0.213 4.213 14 C 0.067 3.933 15 O -0.156 6.156 16 C -0.474 4.474 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.255 4.255 25 C -0.091 4.091 26 C -0.212 4.212 27 C -0.167 4.167 28 C -0.209 4.209 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.165 0.835 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.160 0.840 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.896 19.226 -7.331 30.783 hybrid contribution 0.226 0.013 0.749 0.782 sum -22.670 19.239 -6.582 30.453 Atomic orbital electron populations 1.22991 0.80835 1.03133 1.00790 1.87965 1.20156 1.27587 1.94372 1.23210 0.92995 0.81941 0.96660 1.21253 0.89788 0.95061 0.92835 0.91059 1.21778 1.00596 1.01387 0.95869 1.60428 1.02514 1.53949 1.13912 1.20239 0.89741 0.90386 0.96445 0.89742 1.22440 1.02820 0.98458 0.99241 1.19667 0.93158 0.99030 1.01167 1.20694 0.99381 0.91940 0.94634 1.20499 0.91377 1.01997 1.07403 1.19639 0.92930 0.87415 0.93319 1.83513 1.27756 1.41952 1.62400 1.20708 0.86509 1.08253 1.31922 0.90266 1.25277 0.96009 0.98672 0.98999 1.69733 1.11999 1.28719 1.46206 0.85213 0.78452 0.78184 0.78822 1.19190 1.19085 1.18775 1.21220 1.00652 0.98661 1.04919 1.20882 0.94788 0.95438 0.98031 1.23762 1.02513 0.96864 0.98068 1.22712 1.03250 0.95821 0.94942 1.23721 1.02459 0.96423 0.98250 0.92949 0.89513 0.92901 0.91108 0.93119 0.93532 0.83497 0.92246 0.92185 0.91012 0.83980 0.85846 0.90631 0.87621 0.84878 0.88763 0.90952 0.89395 0.89950 0.90312 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.19 113.37 1.16 1.41 16 2 O -0.38 -7.70 10.46 -148.98 -1.56 -9.25 16 3 C 0.09 1.41 0.74 -10.27 -0.01 1.40 16 4 C 0.12 2.07 1.99 44.91 0.09 2.16 16 5 H 0.07 1.03 6.31 -2.39 -0.02 1.01 16 6 C -0.14 -2.67 9.17 71.98 0.66 -2.01 16 7 N -0.68 -14.33 5.31 -473.31 -2.51 -16.84 16 8 C 0.14 3.15 2.60 44.17 0.11 3.26 16 9 H 0.08 1.82 6.97 -2.39 -0.02 1.81 16 10 C -0.17 -3.06 9.12 71.98 0.66 -2.40 16 11 C -0.13 -3.99 4.96 -19.83 -0.10 -4.09 16 12 C -0.05 -1.58 9.31 22.25 0.21 -1.37 16 13 C -0.19 -7.84 9.99 22.39 0.22 -7.62 16 14 C 0.12 5.65 6.65 22.58 0.15 5.80 16 15 O -0.25 -14.03 8.59 -22.81 -0.20 -14.23 16 16 C -0.40 -24.21 9.95 67.92 0.68 -23.54 16 17 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 18 C 0.01 0.50 5.49 84.83 0.47 0.96 16 19 N -0.93 -56.64 13.96 21.61 0.30 -56.34 16 20 Si 0.97 46.85 28.62 68.60 1.96 48.81 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 C -0.24 -10.77 9.17 22.39 0.21 -10.56 16 25 C -0.07 -2.61 9.66 22.25 0.21 -2.40 16 26 C -0.17 -2.05 6.96 31.18 0.22 -1.83 16 27 C -0.13 -1.21 7.74 31.18 0.24 -0.97 16 28 C -0.17 -1.99 6.93 31.12 0.22 -1.78 16 29 H 0.05 0.58 6.09 -2.38 -0.01 0.57 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.05 0.59 6.09 -2.39 -0.01 0.58 16 32 H 0.07 1.07 6.54 -2.38 -0.02 1.06 16 33 H 0.05 1.03 7.43 -2.39 -0.02 1.01 16 34 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 35 H 0.35 6.95 7.32 -89.69 -0.66 6.29 16 36 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 0.98 7.43 -2.39 -0.02 0.96 16 39 H 0.14 3.78 7.25 -2.91 -0.02 3.75 16 40 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 43 H 0.13 3.99 8.03 -2.91 -0.02 3.97 16 44 H 0.09 1.02 5.91 -2.38 -0.01 1.00 16 45 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 46 H 0.09 0.75 7.64 -2.39 -0.02 0.73 16 47 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.91 6.49 -2.38 -0.02 0.89 16 49 H 0.09 1.00 5.91 -2.39 -0.01 0.98 16 Total: -1.00 -69.48 380.49 3.69 -65.79 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.30 Total: 25.64 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 5.39 Total: -43.58 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -2.21 Total: -73.18 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -1.75 Total: -23.49 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 1.96 Total: 48.81 kcal Total: -69.48 3.69 -65.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840885068.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.623 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds