Wall clock time and date at job start Tue Mar 31 2020 12:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46911 * 2 1 4 4 N 1.46905 * 109.46643 * 240.00260 * 2 1 3 5 5 C 1.46898 * 111.00171 * 85.00041 * 4 2 1 6 6 C 1.52996 * 109.47182 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.46827 * 55.00136 * 6 5 4 8 8 C 1.53000 * 109.47395 * 295.00043 * 6 5 4 9 9 O 1.42900 * 109.46987 * 65.00114 * 8 6 5 10 10 C 1.53001 * 109.47115 * 174.99833 * 6 5 4 11 11 C 1.53001 * 109.47087 * 185.00306 * 10 6 5 12 12 C 1.52991 * 117.49784 * 243.62038 * 11 10 6 13 13 C 1.52995 * 60.00329 * 252.51072 * 12 11 10 14 14 C 1.50693 * 109.47411 * 120.00199 * 2 1 3 15 15 C 1.38306 * 119.93208 * 79.72365 * 14 2 1 16 16 C 1.38095 * 120.06747 * 179.72613 * 15 14 2 17 17 C 1.38884 * 119.93212 * 0.54935 * 16 15 14 18 18 O 1.35750 * 120.06919 * 179.74909 * 17 16 15 19 19 C 1.34826 * 116.99789 * 174.43926 * 18 17 16 20 20 H 1.07994 * 120.00183 * 5.05829 * 19 18 17 21 21 C 1.38659 * 119.99644 * 185.05664 * 19 18 17 22 22 N 1.31556 * 120.00374 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99807 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47151 * 59.99839 * 23 21 19 25 25 H 1.48498 * 109.47206 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47384 * 299.99984 * 23 21 19 27 27 C 1.38870 * 119.86210 * 359.72545 * 17 16 15 28 28 C 1.38101 * 119.93146 * 359.97438 * 27 17 16 29 29 H 1.09007 * 109.46942 * 299.99600 * 1 2 3 30 30 H 1.08992 * 109.47370 * 59.99702 * 1 2 3 31 31 H 1.08999 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.00900 * 111.00087 * 321.04189 * 4 2 1 33 33 H 1.09004 * 109.47020 * 59.99401 * 5 4 2 34 34 H 1.09002 * 109.47013 * 299.99860 * 5 4 2 35 35 H 1.09003 * 109.47065 * 185.00021 * 8 6 5 36 36 H 1.08996 * 109.47052 * 304.99853 * 8 6 5 37 37 H 0.96701 * 113.99871 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47168 * 305.00381 * 10 6 5 39 39 H 1.09000 * 109.47370 * 65.00069 * 10 6 5 40 40 H 1.09002 * 115.55177 * 29.33278 * 11 10 6 41 41 H 1.09004 * 117.50359 * 0.02562 * 12 11 10 42 42 H 1.09003 * 117.50157 * 145.02231 * 12 11 10 43 43 H 1.09004 * 117.49866 * 252.51089 * 13 12 11 44 44 H 1.08998 * 117.51723 * 107.48348 * 13 12 11 45 45 H 1.08000 * 119.95962 * 0.02562 * 15 14 2 46 46 H 1.08003 * 120.03323 * 180.27498 * 16 15 14 47 47 H 0.96996 * 120.00295 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.03678 * 179.97438 * 27 17 16 49 49 H 1.08004 * 119.96638 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3470 6 6 2.5960 -0.5328 -3.5743 7 1 1.9706 -1.4082 -3.7501 8 6 4.0397 -0.9778 -3.3320 9 8 4.0729 -1.9259 -2.2633 10 6 2.5437 0.3853 -4.7971 11 6 2.9384 -0.4056 -6.0459 12 6 4.2081 0.0252 -6.7827 13 6 2.8350 0.3075 -7.3956 14 6 2.0324 -0.7104 1.2304 15 6 2.0609 -2.0927 1.2658 16 6 2.5260 -2.7465 2.3897 17 6 2.9548 -2.0147 3.4895 18 8 3.4078 -2.6547 4.5977 19 6 3.9156 -1.8872 5.5830 20 1 3.8740 -0.8109 5.5051 21 6 4.4913 -2.4800 6.6966 22 7 4.5415 -3.7911 6.7918 23 14 5.1942 -1.4167 8.0621 24 1 4.1195 -0.5611 8.6263 25 1 5.7470 -2.2861 9.1316 26 1 6.2745 -0.5576 7.5142 27 6 2.9196 -0.6270 3.4530 28 6 2.4592 0.0212 2.3237 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4495 -1.4979 -1.4101 33 1 2.7587 1.0462 -2.1182 34 1 1.0869 0.6164 -2.5525 35 1 4.4351 -1.4374 -4.2379 36 1 4.6474 -0.1121 -3.0688 37 1 4.9590 -2.2518 -2.0541 38 1 1.5320 0.7731 -4.9172 39 1 3.2367 1.2151 -4.6583 40 1 2.7077 -1.4706 -6.0204 41 1 4.7626 0.8717 -6.3777 42 1 4.8132 -0.7565 -7.2421 43 1 2.5367 -0.2885 -8.2582 44 1 2.4854 1.3399 -7.3940 45 1 1.7235 -2.6612 0.4118 46 1 2.5522 -3.8260 2.4151 47 1 4.9438 -4.2058 7.5709 48 1 3.2520 -0.0551 4.3067 49 1 2.4320 1.1005 2.2946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850545418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:22 Heat of formation + Delta-G solvation = -36.424141 kcal Electronic energy + Delta-G solvation = -26363.275279 eV Core-core repulsion = 22677.464611 eV Total energy + Delta-G solvation = -3685.810668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.18429 -38.72711 -37.44390 -36.58833 -35.34941 -33.41489 -32.13944 -30.19140 -29.81768 -27.77972 -26.39009 -25.32739 -24.93850 -22.70509 -22.44172 -21.77641 -20.85922 -20.50166 -19.73222 -17.80637 -17.15471 -16.83033 -15.98640 -15.79936 -15.51386 -14.85219 -14.62957 -14.42275 -14.12463 -14.09496 -13.85521 -13.45531 -13.44022 -12.86665 -12.73151 -12.59361 -12.50373 -12.38849 -12.23156 -11.89473 -11.84983 -11.76220 -11.58175 -11.30014 -11.10164 -11.08638 -10.83451 -10.66264 -10.52938 -10.49102 -10.31774 -10.23250 -10.15968 -9.68304 -9.21540 -8.73050 -8.03918 -7.97049 -7.00692 -6.35903 -3.94445 2.38141 2.49254 3.17844 3.19185 3.21661 3.43023 4.03843 4.04436 4.30054 4.45214 4.60453 4.62392 4.74003 4.76841 5.01537 5.10561 5.16811 5.21929 5.26857 5.29824 5.40671 5.41978 5.46111 5.46611 5.52423 5.53928 5.62339 5.64841 5.69904 5.74884 5.78211 5.84139 5.91620 5.92797 6.00978 6.08844 6.15825 6.25592 6.37532 6.57599 6.86937 7.02173 7.19173 7.23428 7.44897 7.56729 7.62580 7.67072 7.90788 7.98628 8.09746 9.10009 9.82993 10.82523 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.002223 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.285851 B =12590.777813 C =13020.673221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 H 0.070 0.930 4 N -0.655 5.655 5 C 0.068 3.932 6 C -0.083 4.083 7 H 0.075 0.925 8 C 0.093 3.907 9 O -0.542 6.542 10 C -0.082 4.082 11 C -0.150 4.150 12 C -0.182 4.182 13 C -0.184 4.184 14 C -0.159 4.159 15 C -0.047 4.047 16 C -0.195 4.195 17 C 0.152 3.848 18 O -0.182 6.182 19 C -0.389 4.389 20 H 0.090 0.910 21 C 0.037 3.963 22 N -0.866 5.866 23 Si 0.939 3.061 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.271 1.271 27 C -0.234 4.234 28 C -0.071 4.071 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.338 0.662 33 H 0.066 0.934 34 H 0.022 0.978 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.369 0.631 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.269 0.731 48 H 0.124 0.876 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.808 8.878 -24.133 25.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.030 3.970 3 H 0.089 0.911 4 N -0.285 5.285 5 C -0.061 4.061 6 C -0.102 4.102 7 H 0.094 0.906 8 C 0.015 3.985 9 O -0.345 6.345 10 C -0.120 4.120 11 C -0.169 4.169 12 C -0.219 4.219 13 C -0.221 4.221 14 C -0.161 4.161 15 C -0.065 4.065 16 C -0.214 4.214 17 C 0.099 3.901 18 O -0.086 6.086 19 C -0.466 4.466 20 H 0.107 0.893 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.764 3.236 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.196 1.196 27 C -0.254 4.254 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.214 0.786 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.079 0.921 48 H 0.141 0.859 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.695 8.659 -23.741 25.539 hybrid contribution 0.092 0.657 0.417 0.784 sum -3.602 9.317 -23.323 25.372 Atomic orbital electron populations 1.22516 0.97745 1.02001 1.01264 1.20195 0.91382 0.96569 0.88853 0.91144 1.60478 1.57476 1.08332 1.02198 1.21937 0.98318 0.95436 0.90428 1.21173 0.96898 0.98408 0.93703 0.90627 1.21947 0.95610 0.91768 0.89171 1.86715 1.32812 1.61052 1.53924 1.21136 1.01809 0.97308 0.91716 1.22360 1.02091 0.99868 0.92535 1.23044 0.90845 1.03477 1.04486 1.22971 1.00792 1.01621 0.96676 1.19066 1.08588 0.93546 0.94874 1.20304 0.97164 0.93406 0.95642 1.20207 1.08931 0.99236 0.93028 1.19381 0.92216 0.90904 0.87604 1.83978 1.67764 1.34956 1.21918 1.21245 1.37873 0.90619 0.96854 0.89289 1.25258 0.96912 0.96279 0.98162 1.70030 1.42046 1.08668 1.29394 0.85811 0.79250 0.78921 0.79592 1.19620 1.20366 1.19593 1.21077 1.09899 0.94414 0.99990 1.20534 0.97586 0.97953 0.92917 0.92105 0.93613 0.92457 0.84359 0.91578 0.96009 0.94716 0.94678 0.78577 0.91100 0.91555 0.87731 0.88804 0.88990 0.88969 0.88880 0.87285 0.86875 0.92130 0.85868 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.14 37.16 0.34 -1.79 16 2 C 0.14 1.92 2.79 -68.86 -0.19 1.73 16 3 H 0.07 0.96 7.66 -51.93 -0.40 0.57 16 4 N -0.65 -8.27 4.03 -107.95 -0.44 -8.71 16 5 C 0.07 0.70 4.87 -3.83 -0.02 0.69 16 6 C -0.08 -0.74 2.28 -90.62 -0.21 -0.95 16 7 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 8 C 0.09 0.91 6.32 37.16 0.23 1.14 16 9 O -0.54 -6.53 11.98 -35.23 -0.42 -6.95 16 10 C -0.08 -0.58 4.96 -26.73 -0.13 -0.71 16 11 C -0.15 -1.03 4.65 -90.62 -0.42 -1.45 16 12 C -0.18 -1.16 10.18 -26.74 -0.27 -1.44 16 13 C -0.18 -1.13 10.25 -26.73 -0.27 -1.41 16 14 C -0.16 -2.80 4.96 -104.58 -0.52 -3.32 16 15 C -0.05 -0.87 9.31 -39.61 -0.37 -1.24 16 16 C -0.19 -4.30 9.99 -39.39 -0.39 -4.69 16 17 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 18 O -0.18 -5.36 9.76 0.06 0.00 -5.36 16 19 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.87 -25.95 13.67 55.48 0.76 -25.19 16 23 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 C -0.23 -5.28 9.17 -39.40 -0.36 -5.65 16 28 C -0.07 -1.36 9.66 -39.61 -0.38 -1.74 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.48 7.45 -51.93 -0.39 0.09 16 31 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 32 H 0.34 4.23 7.82 -39.29 -0.31 3.92 16 33 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.02 0.21 7.44 -51.93 -0.39 -0.18 16 35 H 0.03 0.30 7.23 -51.93 -0.38 -0.07 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.37 3.46 9.12 45.56 0.42 3.87 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 40 H 0.10 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.11 1.80 7.25 -52.49 -0.38 1.42 16 46 H 0.11 2.44 8.06 -52.48 -0.42 2.01 16 47 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 49 H 0.10 1.67 8.03 -52.48 -0.42 1.24 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -31.84 396.83 -9.58 -41.43 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.41 Total: 10.02 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.03 Total: -27.20 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.32 Total: -33.90 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.42 Total: -12.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.84 -9.58 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850545418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.004 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds