Wall clock time and date at job start Tue Mar 31 2020 12:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.46805 * 240.00355 * 2 1 3 5 5 C 1.50702 * 109.47522 * 65.00079 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53001 * 109.47328 * 120.00328 * 2 1 3 14 14 N 1.46499 * 109.46891 * 294.99694 * 13 2 1 15 15 C 1.39941 * 119.99548 * 179.97438 * 14 13 2 16 16 C 1.38859 * 120.02385 * 359.72946 * 15 14 13 17 17 C 1.38107 * 119.98424 * 179.74116 * 16 15 14 18 18 C 1.38704 * 120.01714 * 0.50716 * 17 16 15 19 19 O 1.36001 * 119.98182 * 179.74558 * 18 17 16 20 20 C 1.42898 * 116.99740 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.46700 * 179.97438 * 20 19 18 22 22 H 1.09000 * 110.27680 * 54.30294 * 21 20 19 23 23 C 1.54950 * 110.30712 * 176.38820 * 21 20 19 24 24 C 1.55409 * 100.89151 * 155.28920 * 23 21 20 25 25 C 1.54386 * 102.31171 * 325.99236 * 24 23 21 26 26 O 1.43238 * 107.58758 * 21.28295 * 25 24 23 27 27 C 1.38701 * 120.03599 * 359.76626 * 18 17 16 28 28 C 1.38111 * 120.01973 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.46596 * 299.99619 * 1 2 3 30 30 H 1.08998 * 109.47607 * 59.99437 * 1 2 3 31 31 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47527 * 304.99678 * 4 2 1 33 33 H 1.09001 * 109.47054 * 184.99768 * 4 2 1 34 34 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 35 35 H 1.08995 * 109.46978 * 54.99904 * 13 2 1 36 36 H 1.08999 * 109.47150 * 174.99508 * 13 2 1 37 37 H 0.96993 * 120.00285 * 359.97438 * 14 13 2 38 38 H 1.08006 * 120.00699 * 359.97438 * 16 15 14 39 39 H 1.07999 * 119.99361 * 180.23575 * 17 16 15 40 40 H 1.09000 * 109.47430 * 299.99414 * 20 19 18 41 41 H 1.08995 * 109.47175 * 60.00370 * 20 19 18 42 42 H 1.09000 * 111.12532 * 273.28267 * 23 21 20 43 43 H 1.08996 * 111.12623 * 37.44166 * 23 21 20 44 44 H 1.09001 * 110.88516 * 207.75596 * 24 23 21 45 45 H 1.09000 * 110.93377 * 84.25403 * 24 23 21 46 46 H 1.08997 * 109.82694 * 261.77503 * 25 24 23 47 47 H 1.08999 * 109.82889 * 140.79988 * 25 24 23 48 48 H 1.08002 * 119.98684 * 179.97438 * 27 18 17 49 49 H 1.08008 * 120.00698 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 1.6396 0.2743 -4.7997 9 14 2.9625 -1.9888 -3.9030 10 1 4.4159 -1.6845 -3.8861 11 1 2.6337 -2.8968 -2.7749 12 1 2.6093 -2.6463 -5.1868 13 6 2.0401 -0.7213 1.2492 14 7 1.6526 0.0353 2.4423 15 6 2.0089 -0.4310 3.7127 16 6 2.7249 -1.6136 3.8432 17 6 3.0808 -2.0702 5.0971 18 6 2.7141 -1.3533 6.2265 19 8 3.0605 -1.8064 7.4612 20 6 3.8018 -3.0266 7.5200 21 6 4.0980 -3.3734 8.9805 22 1 3.1740 -3.3956 9.5583 23 6 4.8226 -4.7399 9.0724 24 6 5.5696 -4.5857 10.4265 25 6 5.9132 -3.0806 10.4433 26 8 5.0150 -2.4215 9.5429 27 6 1.9940 -0.1749 6.0974 28 6 1.6420 0.2859 4.8439 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2953 33 1 3.1262 -0.7994 -1.2057 34 1 1.8831 -0.0508 -5.6805 35 1 1.6055 -1.7198 1.2950 36 1 3.1264 -0.7996 1.2055 37 1 1.1491 0.8593 2.3518 38 1 3.0066 -2.1742 2.9641 39 1 3.6409 -2.9880 5.1985 40 1 3.2187 -3.8283 7.0669 41 1 4.7399 -2.9083 6.9777 42 1 4.1078 -5.5621 9.1078 43 1 5.5254 -4.8681 8.2492 44 1 6.4762 -5.1906 10.4412 45 1 4.9190 -4.8444 11.2618 46 1 6.9416 -2.9324 10.1140 47 1 5.7851 -2.6834 11.4502 48 1 1.7086 0.3824 6.9774 49 1 1.0809 1.2033 4.7437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876826749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:01 Heat of formation + Delta-G solvation = -73.202946 kcal Electronic energy + Delta-G solvation = -25604.584079 eV Core-core repulsion = 21917.178563 eV Total energy + Delta-G solvation = -3687.405517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32577 -39.59083 -38.05754 -36.29352 -33.69669 -32.68228 -32.05810 -31.34046 -30.84576 -28.53654 -27.28765 -26.10148 -25.58754 -23.15892 -22.49631 -22.10455 -21.31134 -21.09644 -19.31003 -18.17564 -17.49409 -17.06205 -16.70731 -16.44237 -15.81051 -15.63524 -15.05614 -14.74177 -14.63705 -14.27577 -14.15336 -13.80558 -13.54182 -13.34681 -13.23175 -12.97133 -12.53980 -12.39015 -12.32803 -12.26912 -12.18465 -11.88551 -11.80361 -11.67703 -11.36519 -11.20999 -11.06224 -10.81954 -10.74051 -10.47062 -10.05531 -9.90507 -9.76704 -9.63705 -9.33037 -9.14621 -8.92869 -8.56379 -6.94634 -6.06739 -4.04670 1.40865 1.74871 3.05684 3.28398 3.34455 3.36260 3.38905 3.73561 3.93507 3.94531 4.31558 4.38813 4.42546 4.64089 4.68054 4.77741 4.90074 4.94344 5.03344 5.04666 5.16983 5.26324 5.26475 5.34368 5.37107 5.38264 5.43815 5.54421 5.58745 5.63181 5.64845 5.80017 6.02499 6.08226 6.15464 6.30014 6.32081 6.41444 6.47624 6.59786 6.66683 6.75171 6.82849 6.98876 7.17419 7.36161 7.41801 7.60354 7.76375 7.98916 8.50646 8.97641 9.55480 11.06458 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.001908 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.023759 B =14674.812485 C =15651.990771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.516 4.516 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.126 3.874 14 N -0.743 5.743 15 C 0.193 3.807 16 C -0.163 4.163 17 C -0.157 4.157 18 C 0.059 3.941 19 O -0.313 6.313 20 C 0.064 3.936 21 C 0.084 3.916 22 H 0.081 0.919 23 C -0.150 4.150 24 C -0.155 4.155 25 C 0.047 3.953 26 O -0.370 6.370 27 C -0.100 4.100 28 C -0.164 4.164 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.018 0.982 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.126 0.874 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -9.550 30.506 32.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C 0.002 3.998 14 N -0.373 5.373 15 C 0.089 3.911 16 C -0.186 4.186 17 C -0.176 4.176 18 C 0.014 3.986 19 O -0.227 6.227 20 C -0.012 4.012 21 C 0.026 3.974 22 H 0.099 0.901 23 C -0.187 4.187 24 C -0.193 4.193 25 C -0.029 4.029 26 O -0.290 6.290 27 C -0.119 4.119 28 C -0.186 4.186 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.233 0.767 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.144 0.856 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.350 -9.381 30.278 32.146 hybrid contribution 0.509 -0.950 -0.463 1.173 sum 5.859 -10.331 29.815 32.094 Atomic orbital electron populations 1.21723 0.95445 1.01142 1.00723 1.21239 0.96027 0.99908 0.93468 0.91371 1.19568 0.95704 0.96202 0.92934 1.21088 1.35659 1.09619 0.89060 0.90826 1.25024 0.95642 0.96928 0.95932 1.69910 1.46964 1.39304 0.98021 0.86805 0.80642 0.84412 0.77572 1.20331 1.19025 1.21422 1.21593 0.98824 0.95151 0.84267 1.44898 1.61967 1.28151 1.02274 1.17842 0.94412 0.93114 0.85700 1.20473 1.03701 0.97162 0.97242 1.20939 1.03762 1.00836 0.92095 1.18672 1.00687 0.95818 0.83457 1.86063 1.70610 1.39788 1.26281 1.22840 0.95981 0.86329 0.96021 1.22997 0.93719 0.87700 0.92977 0.90082 1.23265 1.00085 0.97044 0.98341 1.23133 1.01506 0.96881 0.97744 1.23157 0.94159 0.91486 0.94147 1.88546 1.46476 1.32921 1.61010 1.20086 0.99731 0.94741 0.97347 1.20398 1.06076 1.01615 0.90553 0.94784 0.91283 0.93566 0.96391 0.96937 0.92748 0.92826 0.92807 0.76676 0.85812 0.86105 0.91021 0.91591 0.89274 0.89835 0.89732 0.90300 0.91203 0.91288 0.85611 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 2 C -0.09 -1.62 2.37 -90.62 -0.22 -1.84 16 3 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.01 -0.14 3.51 -27.88 -0.10 -0.24 16 5 C -0.52 -14.22 8.96 -34.44 -0.31 -14.53 16 6 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 9 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.13 1.97 4.30 -4.04 -0.02 1.96 16 14 N -0.74 -10.42 5.47 -58.59 -0.32 -10.74 16 15 C 0.19 2.67 6.66 -83.70 -0.56 2.12 16 16 C -0.16 -2.20 9.31 -39.40 -0.37 -2.57 16 17 C -0.16 -1.95 9.03 -39.46 -0.36 -2.31 16 18 C 0.06 0.77 6.69 -39.24 -0.26 0.51 16 19 O -0.31 -3.94 10.14 -20.47 -0.21 -4.15 16 20 C 0.06 0.59 4.45 37.16 0.17 0.76 16 21 C 0.08 0.68 3.72 -25.70 -0.10 0.58 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.15 -0.76 6.58 -24.42 -0.16 -0.92 16 24 C -0.16 -0.70 7.02 -24.73 -0.17 -0.87 16 25 C 0.05 0.31 7.80 37.88 0.30 0.61 16 26 O -0.37 -3.81 11.04 -35.96 -0.40 -4.21 16 27 C -0.10 -1.26 9.98 -39.46 -0.39 -1.65 16 28 C -0.16 -2.05 9.89 -39.40 -0.39 -2.44 16 29 H 0.03 0.50 7.18 -51.92 -0.37 0.13 16 30 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 33 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.05 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.05 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.40 5.17 7.67 -40.82 -0.31 4.85 16 38 H 0.12 1.62 6.73 -52.48 -0.35 1.27 16 39 H 0.12 1.23 6.29 -52.49 -0.33 0.90 16 40 H 0.07 0.53 7.66 -51.93 -0.40 0.14 16 41 H 0.07 0.60 7.66 -51.93 -0.40 0.21 16 42 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 44 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 49 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -31.83 389.16 -9.97 -41.80 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.31 Total: 2.49 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.70 Total: -21.08 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.45 Total: -37.46 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.60 Total: -8.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.83 -9.97 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876826749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.404 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds