Wall clock time and date at job start Tue Mar 31 2020 12:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47459 * 2 1 4 4 C 1.52999 * 109.46805 * 240.00355 * 2 1 3 5 5 C 1.50702 * 109.47522 * 65.00079 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.53001 * 109.47328 * 120.00328 * 2 1 3 14 14 N 1.46499 * 109.46891 * 294.99694 * 13 2 1 15 15 C 1.39941 * 119.99548 * 179.97438 * 14 13 2 16 16 C 1.38859 * 120.02385 * 359.72946 * 15 14 13 17 17 C 1.38107 * 119.98424 * 179.74116 * 16 15 14 18 18 C 1.38704 * 120.01714 * 0.50716 * 17 16 15 19 19 O 1.36001 * 119.98182 * 179.74558 * 18 17 16 20 20 C 1.42898 * 116.99740 * 0.02562 * 19 18 17 21 21 C 1.53004 * 109.46700 * 179.97438 * 20 19 18 22 22 H 1.09000 * 110.27680 * 54.30294 * 21 20 19 23 23 C 1.54950 * 110.30712 * 176.38820 * 21 20 19 24 24 C 1.55409 * 100.89151 * 155.28920 * 23 21 20 25 25 C 1.54386 * 102.31171 * 325.99236 * 24 23 21 26 26 O 1.43238 * 107.58758 * 21.28295 * 25 24 23 27 27 C 1.38701 * 120.03599 * 359.76626 * 18 17 16 28 28 C 1.38111 * 120.01973 * 359.97438 * 27 18 17 29 29 H 1.09008 * 109.46596 * 299.99619 * 1 2 3 30 30 H 1.08998 * 109.47607 * 59.99437 * 1 2 3 31 31 H 1.08994 * 109.47129 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47527 * 304.99678 * 4 2 1 33 33 H 1.09001 * 109.47054 * 184.99768 * 4 2 1 34 34 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 35 35 H 1.08995 * 109.46978 * 54.99904 * 13 2 1 36 36 H 1.08999 * 109.47150 * 174.99508 * 13 2 1 37 37 H 0.96993 * 120.00285 * 359.97438 * 14 13 2 38 38 H 1.08006 * 120.00699 * 359.97438 * 16 15 14 39 39 H 1.07999 * 119.99361 * 180.23575 * 17 16 15 40 40 H 1.09000 * 109.47430 * 299.99414 * 20 19 18 41 41 H 1.08995 * 109.47175 * 60.00370 * 20 19 18 42 42 H 1.09000 * 111.12532 * 273.28267 * 23 21 20 43 43 H 1.08996 * 111.12623 * 37.44166 * 23 21 20 44 44 H 1.09001 * 110.88516 * 207.75596 * 24 23 21 45 45 H 1.09000 * 110.93377 * 84.25403 * 24 23 21 46 46 H 1.08997 * 109.82694 * 261.77503 * 25 24 23 47 47 H 1.08999 * 109.82889 * 140.79988 * 25 24 23 48 48 H 1.08002 * 119.98684 * 179.97438 * 27 18 17 49 49 H 1.08008 * 120.00698 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4021 -3.7283 8 7 1.6396 0.2743 -4.7997 9 14 2.9625 -1.9888 -3.9030 10 1 4.4159 -1.6845 -3.8861 11 1 2.6337 -2.8968 -2.7749 12 1 2.6093 -2.6463 -5.1868 13 6 2.0401 -0.7213 1.2492 14 7 1.6526 0.0353 2.4423 15 6 2.0089 -0.4310 3.7127 16 6 2.7249 -1.6136 3.8432 17 6 3.0808 -2.0702 5.0971 18 6 2.7141 -1.3533 6.2265 19 8 3.0605 -1.8064 7.4612 20 6 3.8018 -3.0266 7.5200 21 6 4.0980 -3.3734 8.9805 22 1 3.1740 -3.3956 9.5583 23 6 4.8226 -4.7399 9.0724 24 6 5.5696 -4.5857 10.4265 25 6 5.9132 -3.0806 10.4433 26 8 5.0150 -2.4215 9.5429 27 6 1.9940 -0.1749 6.0974 28 6 1.6420 0.2859 4.8439 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2953 33 1 3.1262 -0.7994 -1.2057 34 1 1.8831 -0.0508 -5.6805 35 1 1.6055 -1.7198 1.2950 36 1 3.1264 -0.7996 1.2055 37 1 1.1491 0.8593 2.3518 38 1 3.0066 -2.1742 2.9641 39 1 3.6409 -2.9880 5.1985 40 1 3.2187 -3.8283 7.0669 41 1 4.7399 -2.9083 6.9777 42 1 4.1078 -5.5621 9.1078 43 1 5.5254 -4.8681 8.2492 44 1 6.4762 -5.1906 10.4412 45 1 4.9190 -4.8444 11.2618 46 1 6.9416 -2.9324 10.1140 47 1 5.7851 -2.6834 11.4502 48 1 1.7086 0.3824 6.9774 49 1 1.0809 1.2033 4.7437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876826749.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:00 Heat of formation + Delta-G solvation = -91.924369 kcal Electronic energy + Delta-G solvation = -25605.395901 eV Core-core repulsion = 21917.178563 eV Total energy + Delta-G solvation = -3688.217338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.14188 -40.29613 -39.07700 -37.60245 -35.21175 -33.87016 -33.18913 -32.10263 -31.69181 -29.96718 -28.73234 -27.03208 -26.61151 -24.58210 -23.57335 -22.64410 -22.15264 -22.02247 -20.81263 -19.07136 -18.97482 -18.13427 -17.82346 -17.20335 -16.67249 -16.41997 -16.27819 -15.99798 -15.76966 -15.54390 -15.18909 -14.90614 -14.50844 -14.42820 -14.27517 -14.09075 -14.01536 -13.62828 -13.38228 -13.34703 -13.12419 -12.85921 -12.70345 -12.63452 -12.34461 -12.22869 -12.16780 -11.96132 -11.79584 -11.76762 -11.59198 -11.52336 -11.34547 -11.10274 -10.73607 -10.50496 -10.36435 -9.89152 -8.26125 -7.97345 -6.28890 0.44891 0.75378 1.37120 1.38675 1.50040 2.29562 2.37877 2.63161 2.81281 2.96281 3.09420 3.52010 3.79812 3.94558 3.95721 4.00503 4.04880 4.10259 4.16810 4.17673 4.33049 4.33849 4.40697 4.46500 4.49819 4.60278 4.66922 4.76281 4.80398 4.82494 4.88802 4.91632 4.95349 4.99842 5.04379 5.09255 5.20419 5.22794 5.27269 5.35043 5.42556 5.49381 5.50759 5.65805 5.69729 5.77544 6.06562 6.30843 6.42413 6.63825 6.78773 6.95086 7.34808 8.90341 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.001908 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.023759 B =14674.812485 C =15651.990771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.953 5.953 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.244 1.244 12 H -0.288 1.288 13 C 0.141 3.859 14 N -0.743 5.743 15 C 0.177 3.823 16 C -0.174 4.174 17 C -0.159 4.159 18 C 0.052 3.948 19 O -0.330 6.330 20 C 0.058 3.942 21 C 0.078 3.922 22 H 0.079 0.921 23 C -0.143 4.143 24 C -0.149 4.149 25 C 0.037 3.963 26 O -0.406 6.406 27 C -0.110 4.110 28 C -0.162 4.162 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.403 0.597 38 H 0.127 0.873 39 H 0.141 0.859 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.137 0.863 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 -11.910 32.639 35.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 H 0.077 0.923 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.594 5.594 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.167 1.167 12 H -0.214 1.214 13 C 0.016 3.984 14 N -0.374 5.374 15 C 0.074 3.926 16 C -0.196 4.196 17 C -0.178 4.178 18 C 0.006 3.994 19 O -0.245 6.245 20 C -0.017 4.017 21 C 0.021 3.979 22 H 0.097 0.903 23 C -0.181 4.181 24 C -0.186 4.186 25 C -0.039 4.039 26 O -0.326 6.326 27 C -0.129 4.129 28 C -0.184 4.184 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.238 0.762 38 H 0.145 0.855 39 H 0.159 0.841 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.106 0.894 44 H 0.119 0.881 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.155 0.845 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.266 -11.744 32.456 35.079 hybrid contribution 0.204 -0.125 -1.029 1.056 sum 6.469 -11.869 31.428 34.211 Atomic orbital electron populations 1.21638 0.94858 1.01310 1.00596 1.21074 0.96479 0.99220 0.93259 0.92326 1.19523 0.96071 0.95997 0.92715 1.21432 1.34449 1.08720 0.91188 0.94591 1.25998 0.97060 1.00908 0.95566 1.70071 1.49032 1.41626 0.98697 0.85710 0.79139 0.79989 0.78125 1.19410 1.16700 1.21365 1.21277 0.98695 0.94961 0.83450 1.44708 1.62507 1.28316 1.01884 1.17987 0.95223 0.93685 0.85682 1.20631 1.03918 0.97302 0.97788 1.21135 1.03627 1.01506 0.91527 1.18895 1.00551 0.96042 0.83913 1.86054 1.70995 1.41313 1.26172 1.23099 0.95830 0.85656 0.97145 1.23135 0.93757 0.88980 0.92049 0.90343 1.23282 1.00289 0.95716 0.98788 1.23140 1.02358 0.95375 0.97732 1.23349 0.93781 0.92999 0.93768 1.88503 1.47369 1.34856 1.61872 1.20332 0.99773 0.94975 0.97867 1.20588 1.05698 1.02005 0.90134 0.91854 0.94447 0.93187 0.95921 0.96314 0.92707 0.92286 0.92766 0.76156 0.85525 0.84131 0.89129 0.91742 0.87412 0.89433 0.88063 0.89431 0.90915 0.90913 0.84521 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 8.88 71.98 0.64 -3.74 16 2 C -0.08 -2.95 2.37 -10.79 -0.03 -2.97 16 3 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.01 -0.23 3.51 29.85 0.10 -0.13 16 5 C -0.52 -29.17 8.96 25.60 0.23 -28.94 16 6 H 0.04 2.22 7.30 -2.91 -0.02 2.20 16 7 C 0.00 0.05 5.47 84.65 0.46 0.52 16 8 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 9 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 12 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.14 4.14 4.30 86.38 0.37 4.51 16 14 N -0.74 -19.41 5.47 -339.28 -1.86 -21.27 16 15 C 0.18 4.58 6.66 38.14 0.25 4.83 16 16 C -0.17 -4.37 9.31 22.39 0.21 -4.16 16 17 C -0.16 -3.66 9.03 22.35 0.20 -3.46 16 18 C 0.05 1.28 6.69 22.49 0.15 1.43 16 19 O -0.33 -8.00 10.14 -92.87 -0.94 -8.94 16 20 C 0.06 0.98 4.45 71.98 0.32 1.30 16 21 C 0.08 1.16 3.72 31.26 0.12 1.28 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 C -0.14 -1.12 6.58 32.09 0.21 -0.91 16 24 C -0.15 -1.00 7.02 31.89 0.22 -0.78 16 25 C 0.04 0.45 7.80 72.45 0.56 1.02 16 26 O -0.41 -8.14 11.04 -148.28 -1.64 -9.78 16 27 C -0.11 -2.63 9.98 22.35 0.22 -2.41 16 28 C -0.16 -3.79 9.89 22.39 0.22 -3.56 16 29 H 0.06 1.79 7.18 -2.38 -0.02 1.77 16 30 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 31 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 33 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.06 1.69 7.94 -2.39 -0.02 1.67 16 36 H 0.05 1.60 7.96 -2.39 -0.02 1.58 16 37 H 0.40 9.69 7.67 -92.71 -0.71 8.97 16 38 H 0.13 3.05 6.73 -2.91 -0.02 3.03 16 39 H 0.14 2.55 6.29 -2.91 -0.02 2.53 16 40 H 0.09 1.16 7.66 -2.39 -0.02 1.14 16 41 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 42 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.09 0.62 8.06 -2.39 -0.02 0.60 16 44 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 49 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -69.81 389.16 2.39 -67.43 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.16 Total: 22.41 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 4.48 Total: -36.17 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -1.56 Total: -80.58 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -2.58 Total: -18.72 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -69.81 2.39 -67.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876826749.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.495 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds