Wall clock time and date at job start Tue Mar 31 2020 13:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47221 * 2 1 4 4 C 1.52994 * 109.46903 * 120.00515 * 2 1 3 5 5 O 1.42896 * 109.47296 * 300.28253 * 4 2 1 6 6 C 1.42908 * 113.99969 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99769 * 90.00317 * 7 6 5 9 9 C 1.38231 * 119.99817 * 180.02562 * 8 7 6 10 10 C 1.38229 * 120.00399 * 359.97438 * 9 8 7 11 11 C 1.38245 * 119.99717 * 0.25775 * 10 9 8 12 12 C 1.38228 * 119.99475 * 359.48828 * 11 10 9 13 13 C 1.53004 * 109.46514 * 240.00347 * 2 1 3 14 14 N 1.46905 * 109.46607 * 178.30674 * 13 2 1 15 15 C 1.47905 * 111.00009 * 82.31626 * 14 13 2 16 16 C 1.53996 * 107.05398 * 214.15535 * 15 14 13 17 17 C 1.54594 * 105.14112 * 1.22167 * 16 15 14 18 18 O 1.42900 * 110.72426 * 263.42382 * 17 16 15 19 19 C 1.50700 * 110.72151 * 140.31784 * 17 16 15 20 20 H 1.07999 * 120.00206 * 3.47240 * 19 17 16 21 21 C 1.37878 * 119.99671 * 183.47404 * 19 17 16 22 22 N 1.31518 * 119.99896 * 183.51537 * 21 19 17 23 23 Si 1.86794 * 120.00386 * 3.51167 * 21 19 17 24 24 H 1.48505 * 109.47214 * 93.31380 * 23 21 19 25 25 H 1.48499 * 109.47377 * 213.31876 * 23 21 19 26 26 H 1.48501 * 109.47106 * 333.31982 * 23 21 19 27 27 C 1.48535 * 111.00120 * 324.91547 * 14 13 2 28 28 H 1.08998 * 109.47640 * 185.01212 * 1 2 3 29 29 H 1.09008 * 109.46841 * 305.00891 * 1 2 3 30 30 H 1.08997 * 109.47212 * 65.00172 * 1 2 3 31 31 H 1.09005 * 109.46643 * 180.28229 * 4 2 1 32 32 H 1.08998 * 109.47324 * 60.29162 * 4 2 1 33 33 H 1.08995 * 109.46921 * 59.99780 * 6 5 4 34 34 H 1.08994 * 109.46665 * 300.00127 * 6 5 4 35 35 H 1.08000 * 120.00015 * 359.97438 * 8 7 6 36 36 H 1.08007 * 120.00092 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.00578 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.99998 * 179.72318 * 11 10 9 39 39 H 1.08008 * 119.99790 * 180.23277 * 12 11 10 40 40 H 1.08996 * 109.46900 * 298.30533 * 13 2 1 41 41 H 1.08996 * 109.47278 * 58.30909 * 13 2 1 42 42 H 1.09002 * 109.91344 * 333.50717 * 15 14 13 43 43 H 1.08995 * 109.91801 * 94.79969 * 15 14 13 44 44 H 1.09000 * 110.30716 * 120.14471 * 16 15 14 45 45 H 1.08999 * 110.30409 * 242.20535 * 16 15 14 46 46 H 0.96708 * 114.00010 * 298.54685 * 18 17 16 47 47 H 0.96996 * 120.00008 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.66835 * 278.15763 * 27 14 13 49 49 H 1.09000 * 110.66601 * 41.28690 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2491 5 8 1.5582 -0.0517 2.4159 6 6 1.9799 -0.6482 3.6442 7 6 1.4176 0.1354 4.8022 8 6 0.1850 -0.2003 5.3304 9 6 -0.3309 0.5188 6.3922 10 6 0.3857 1.5732 6.9262 11 6 1.6162 1.9120 6.3949 12 6 2.1345 1.1896 5.3365 13 6 2.0399 -0.7212 -1.2494 14 7 3.5084 -0.6859 -1.2700 15 6 4.0763 -1.7571 -0.4230 16 6 5.3714 -1.2025 0.1987 17 6 5.4801 0.2489 -0.3224 18 8 6.3344 0.3129 -1.4661 19 6 5.9755 1.1694 0.7631 20 1 6.2524 0.7682 1.7267 21 6 6.0752 2.5240 0.5258 22 7 6.5724 3.3183 1.4486 23 14 5.5044 3.2310 -1.1062 24 1 4.0938 3.6793 -0.9852 25 1 6.3617 4.3871 -1.4719 26 1 5.6037 2.1885 -2.1591 27 6 4.0181 0.5899 -0.7055 28 1 -0.3634 -1.0237 0.0898 29 1 -0.3633 0.5896 0.8418 30 1 -0.3633 0.4343 -0.9314 31 1 3.1300 -0.7169 1.2516 32 1 1.6809 -1.7505 1.2465 33 1 3.0686 -0.6419 3.6962 34 1 1.6198 -1.6758 3.6914 35 1 -0.3751 -1.0239 4.9129 36 1 -1.2942 0.2567 6.8046 37 1 -0.0176 2.1354 7.7556 38 1 2.1742 2.7387 6.8092 39 1 3.0975 1.4519 4.9238 40 1 1.7015 -1.7572 -1.2343 41 1 1.6520 -0.2252 -2.1390 42 1 3.3702 -2.0217 0.3641 43 1 4.3020 -2.6321 -1.0325 44 1 5.3023 -1.2099 1.2864 45 1 6.2297 -1.7890 -0.1291 46 1 7.2443 0.0344 -1.2936 47 1 6.6422 4.2713 1.2819 48 1 3.9913 1.3804 -1.4555 49 1 3.4459 0.8760 0.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886265629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:18 Heat of formation + Delta-G solvation = -40.472284 kcal Electronic energy + Delta-G solvation = -28361.506888 eV Core-core repulsion = 24675.520679 eV Total energy + Delta-G solvation = -3685.986209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86434 -39.21205 -37.37349 -35.67285 -33.29587 -32.31925 -31.74890 -30.88030 -29.82423 -28.46006 -26.76578 -25.69145 -25.18986 -23.80050 -22.56053 -21.31203 -20.92304 -19.95177 -19.20139 -17.45820 -16.89372 -16.57697 -16.06710 -15.56976 -15.43818 -15.04884 -14.92777 -14.43882 -14.09054 -14.01999 -13.56281 -13.40012 -13.36317 -12.89857 -12.79139 -12.64655 -12.60318 -12.20434 -12.02284 -11.91272 -11.52045 -11.47420 -11.31875 -11.02586 -11.02125 -10.84050 -10.82257 -10.61915 -10.30958 -10.15133 -10.08794 -9.81816 -9.37622 -8.90186 -8.87031 -8.82179 -8.64694 -8.30690 -7.71822 -6.16475 -4.27333 1.27657 1.42248 3.35868 3.47319 3.58100 3.71738 4.13299 4.48529 4.59692 4.81287 4.84284 4.99114 5.02540 5.05531 5.13771 5.16757 5.28983 5.32105 5.36389 5.45166 5.48129 5.51023 5.54892 5.60075 5.68300 5.71982 5.82316 5.90887 5.91178 5.98201 6.01067 6.07508 6.18423 6.26549 6.28767 6.37100 6.42583 6.44032 6.52093 6.56578 6.64186 6.65547 6.83221 6.99676 7.13578 7.33681 7.39636 7.58434 7.67781 8.26277 8.80151 9.05850 9.49185 10.93955 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.004517 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.768204 B = 6197.442287 C = 7421.464265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.132 4.132 3 H 0.092 0.908 4 C 0.054 3.946 5 O -0.376 6.376 6 C 0.102 3.898 7 C -0.085 4.085 8 C -0.102 4.102 9 C -0.129 4.129 10 C -0.119 4.119 11 C -0.123 4.123 12 C -0.093 4.093 13 C 0.051 3.949 14 N -0.514 5.514 15 C 0.024 3.976 16 C -0.146 4.146 17 C 0.224 3.776 18 O -0.566 6.566 19 C -0.551 4.551 20 H 0.074 0.926 21 C 0.090 3.910 22 N -0.889 5.889 23 Si 0.863 3.137 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.216 1.216 27 C 0.030 3.970 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.358 0.642 47 H 0.265 0.735 48 H 0.072 0.928 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.483 -8.746 5.336 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 H 0.110 0.890 4 C -0.022 4.022 5 O -0.296 6.296 6 C 0.026 3.974 7 C -0.085 4.085 8 C -0.120 4.120 9 C -0.147 4.147 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.111 4.111 13 C -0.078 4.078 14 N -0.237 5.237 15 C -0.104 4.104 16 C -0.185 4.185 17 C 0.184 3.816 18 O -0.372 6.372 19 C -0.589 4.589 20 H 0.093 0.907 21 C -0.115 4.115 22 N -0.526 5.526 23 Si 0.691 3.309 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.139 1.139 27 C -0.097 4.097 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.204 0.796 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.949 -8.291 4.525 16.028 hybrid contribution 0.055 0.266 0.509 0.577 sum -12.894 -8.025 5.034 16.000 Atomic orbital electron populations 1.21661 0.94547 1.01402 1.01719 1.21907 0.96858 1.02354 0.94096 0.89019 1.23164 0.99584 0.94451 0.85010 1.87933 1.74332 1.54614 1.12726 1.21268 0.98675 0.94606 0.82877 1.19643 0.95251 0.97291 0.96301 1.21027 0.94827 0.99857 0.96310 1.21082 0.99899 0.96522 0.97184 1.21170 0.95154 0.97414 0.99958 1.21195 0.96124 0.99862 0.96869 1.21264 1.00397 0.93962 0.95487 1.22392 0.89332 0.99998 0.96083 1.65006 1.05334 1.03963 1.49360 1.23161 0.96673 0.95334 0.95206 1.23037 0.96298 0.99062 1.00091 1.19834 0.87124 0.90499 0.84142 1.86573 1.23106 1.89680 1.37822 1.21349 1.46499 0.91832 0.99207 0.90749 1.24946 0.92946 0.96976 0.96643 1.69935 1.43514 1.04723 1.34413 0.87242 0.77732 0.79044 0.86894 1.21438 1.22547 1.13919 1.23956 0.96030 0.91168 0.98537 0.93253 0.92034 0.92882 0.90700 0.93968 0.91995 0.93032 0.86244 0.86224 0.86244 0.85842 0.85214 0.91452 0.90331 0.93480 0.91579 0.91528 0.91946 0.79629 0.92545 0.91013 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.97 37.16 0.33 -1.43 16 2 C -0.13 -2.05 2.13 -90.62 -0.19 -2.25 16 3 H 0.09 1.68 5.99 -51.93 -0.31 1.37 16 4 C 0.05 0.84 3.36 37.15 0.12 0.96 16 5 O -0.38 -6.26 9.74 -35.23 -0.34 -6.60 16 6 C 0.10 1.47 6.06 36.00 0.22 1.68 16 7 C -0.08 -1.20 5.51 -104.63 -0.58 -1.77 16 8 C -0.10 -1.25 9.70 -39.58 -0.38 -1.63 16 9 C -0.13 -1.42 10.05 -39.59 -0.40 -1.82 16 10 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 11 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 12 C -0.09 -1.35 9.70 -39.59 -0.38 -1.73 16 13 C 0.05 0.77 5.34 -3.82 -0.02 0.75 16 14 N -0.51 -9.50 5.54 -230.45 -1.28 -10.78 16 15 C 0.02 0.40 5.68 -2.75 -0.02 0.39 16 16 C -0.15 -2.80 5.73 -25.37 -0.15 -2.94 16 17 C 0.22 5.11 0.78 -89.91 -0.07 5.04 16 18 O -0.57 -13.00 10.28 -35.23 -0.36 -13.36 16 19 C -0.55 -14.81 8.82 -34.44 -0.30 -15.11 16 20 H 0.07 2.15 7.82 -52.49 -0.41 1.74 16 21 C 0.09 2.54 5.47 -17.82 -0.10 2.44 16 22 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 23 Si 0.86 21.91 24.25 -169.99 -4.12 17.78 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 26 H -0.22 -5.44 5.00 56.52 0.28 -5.16 16 27 C 0.03 0.64 3.46 -1.90 -0.01 0.64 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.86 7.83 -51.92 -0.41 0.45 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.32 3.77 -51.93 -0.20 1.12 16 32 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 40 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.72 4.39 -51.93 -0.23 0.49 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.28 7.43 -51.93 -0.39 0.89 16 45 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 46 H 0.36 7.13 9.09 45.56 0.41 7.54 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 1.69 4.75 -51.93 -0.25 1.44 16 49 H 0.08 1.67 4.10 -51.93 -0.21 1.46 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -31.43 370.00 -9.58 -41.00 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.11 Total: 12.64 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.71 Total: -20.44 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.50 Total: -36.61 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.71 Total: -19.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.12 Total: 17.78 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.43 -9.58 -41.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.530 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds