Wall clock time and date at job start Tue Mar 31 2020 13:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47221 * 2 1 4 4 C 1.52994 * 109.46903 * 120.00515 * 2 1 3 5 5 O 1.42896 * 109.47296 * 300.28253 * 4 2 1 6 6 C 1.42908 * 113.99969 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.38237 * 119.99769 * 90.00317 * 7 6 5 9 9 C 1.38231 * 119.99817 * 180.02562 * 8 7 6 10 10 C 1.38229 * 120.00399 * 359.97438 * 9 8 7 11 11 C 1.38245 * 119.99717 * 0.25775 * 10 9 8 12 12 C 1.38228 * 119.99475 * 359.48828 * 11 10 9 13 13 C 1.53004 * 109.46514 * 240.00347 * 2 1 3 14 14 N 1.46905 * 109.46607 * 178.30674 * 13 2 1 15 15 C 1.47905 * 111.00009 * 82.31626 * 14 13 2 16 16 C 1.53996 * 107.05398 * 214.15535 * 15 14 13 17 17 C 1.54594 * 105.14112 * 1.22167 * 16 15 14 18 18 O 1.42900 * 110.72426 * 263.42382 * 17 16 15 19 19 C 1.50700 * 110.72151 * 140.31784 * 17 16 15 20 20 H 1.07999 * 120.00206 * 3.47240 * 19 17 16 21 21 C 1.37878 * 119.99671 * 183.47404 * 19 17 16 22 22 N 1.31518 * 119.99896 * 183.51537 * 21 19 17 23 23 Si 1.86794 * 120.00386 * 3.51167 * 21 19 17 24 24 H 1.48505 * 109.47214 * 93.31380 * 23 21 19 25 25 H 1.48499 * 109.47377 * 213.31876 * 23 21 19 26 26 H 1.48501 * 109.47106 * 333.31982 * 23 21 19 27 27 C 1.48535 * 111.00120 * 324.91547 * 14 13 2 28 28 H 1.08998 * 109.47640 * 185.01212 * 1 2 3 29 29 H 1.09008 * 109.46841 * 305.00891 * 1 2 3 30 30 H 1.08997 * 109.47212 * 65.00172 * 1 2 3 31 31 H 1.09005 * 109.46643 * 180.28229 * 4 2 1 32 32 H 1.08998 * 109.47324 * 60.29162 * 4 2 1 33 33 H 1.08995 * 109.46921 * 59.99780 * 6 5 4 34 34 H 1.08994 * 109.46665 * 300.00127 * 6 5 4 35 35 H 1.08000 * 120.00015 * 359.97438 * 8 7 6 36 36 H 1.08007 * 120.00092 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.00578 * 179.97438 * 10 9 8 38 38 H 1.08001 * 119.99998 * 179.72318 * 11 10 9 39 39 H 1.08008 * 119.99790 * 180.23277 * 12 11 10 40 40 H 1.08996 * 109.46900 * 298.30533 * 13 2 1 41 41 H 1.08996 * 109.47278 * 58.30909 * 13 2 1 42 42 H 1.09002 * 109.91344 * 333.50717 * 15 14 13 43 43 H 1.08995 * 109.91801 * 94.79969 * 15 14 13 44 44 H 1.09000 * 110.30716 * 120.14471 * 16 15 14 45 45 H 1.08999 * 110.30409 * 242.20535 * 16 15 14 46 46 H 0.96708 * 114.00010 * 298.54685 * 18 17 16 47 47 H 0.96996 * 120.00008 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.66835 * 278.15763 * 27 14 13 49 49 H 1.09000 * 110.66601 * 41.28690 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2491 5 8 1.5582 -0.0517 2.4159 6 6 1.9799 -0.6482 3.6442 7 6 1.4176 0.1354 4.8022 8 6 0.1850 -0.2003 5.3304 9 6 -0.3309 0.5188 6.3922 10 6 0.3857 1.5732 6.9262 11 6 1.6162 1.9120 6.3949 12 6 2.1345 1.1896 5.3365 13 6 2.0399 -0.7212 -1.2494 14 7 3.5084 -0.6859 -1.2700 15 6 4.0763 -1.7571 -0.4230 16 6 5.3714 -1.2025 0.1987 17 6 5.4801 0.2489 -0.3224 18 8 6.3344 0.3129 -1.4661 19 6 5.9755 1.1694 0.7631 20 1 6.2524 0.7682 1.7267 21 6 6.0752 2.5240 0.5258 22 7 6.5724 3.3183 1.4486 23 14 5.5044 3.2310 -1.1062 24 1 4.0938 3.6793 -0.9852 25 1 6.3617 4.3871 -1.4719 26 1 5.6037 2.1885 -2.1591 27 6 4.0181 0.5899 -0.7055 28 1 -0.3634 -1.0237 0.0898 29 1 -0.3633 0.5896 0.8418 30 1 -0.3633 0.4343 -0.9314 31 1 3.1300 -0.7169 1.2516 32 1 1.6809 -1.7505 1.2465 33 1 3.0686 -0.6419 3.6962 34 1 1.6198 -1.6758 3.6914 35 1 -0.3751 -1.0239 4.9129 36 1 -1.2942 0.2567 6.8046 37 1 -0.0176 2.1354 7.7556 38 1 2.1742 2.7387 6.8092 39 1 3.0975 1.4519 4.9238 40 1 1.7015 -1.7572 -1.2343 41 1 1.6520 -0.2252 -2.1390 42 1 3.3702 -2.0217 0.3641 43 1 4.3020 -2.6321 -1.0325 44 1 5.3023 -1.2099 1.2864 45 1 6.2297 -1.7890 -0.1291 46 1 7.2443 0.0344 -1.2936 47 1 6.6422 4.2713 1.2819 48 1 3.9913 1.3804 -1.4555 49 1 3.4459 0.8760 0.1770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886265629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:17 Heat of formation + Delta-G solvation = -63.351907 kcal Electronic energy + Delta-G solvation = -28362.499023 eV Core-core repulsion = 24675.520679 eV Total energy + Delta-G solvation = -3686.978343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26666 -40.24596 -38.69790 -37.21295 -34.68397 -34.48684 -32.80478 -31.83226 -31.30532 -30.17292 -27.88019 -27.22256 -26.48158 -25.40056 -23.51955 -22.39784 -22.30776 -21.52092 -20.65729 -19.39721 -17.99305 -17.74559 -17.37051 -17.09299 -16.96364 -16.43968 -16.23113 -15.77901 -15.67962 -15.23986 -15.00169 -14.85311 -14.56006 -14.38455 -14.28649 -13.90059 -13.64836 -13.57795 -13.40708 -13.21354 -13.03968 -13.03015 -12.79503 -12.54033 -12.41275 -12.22543 -12.01273 -11.92162 -11.85973 -11.69210 -11.51409 -11.37005 -10.91430 -10.77620 -10.59136 -10.18265 -9.87003 -9.80063 -9.16131 -8.39415 -6.51023 0.30003 0.45270 1.29616 1.36857 1.64437 2.35448 2.53243 2.96754 3.05014 3.21675 3.66571 3.72627 3.79327 3.86005 3.93513 3.98572 4.10074 4.12372 4.20195 4.25096 4.28243 4.34041 4.37796 4.39734 4.50185 4.60610 4.62477 4.64864 4.70730 4.73854 4.85313 4.90480 4.92617 5.03505 5.06792 5.10309 5.11207 5.20956 5.22937 5.36222 5.45570 5.50618 5.50842 5.56477 5.64866 5.93185 6.05874 6.09148 6.19875 6.21731 6.60550 7.19894 7.37160 8.74876 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.004517 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.768204 B = 6197.442287 C = 7421.464265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.130 4.130 3 H 0.054 0.946 4 C 0.055 3.945 5 O -0.396 6.396 6 C 0.102 3.898 7 C -0.105 4.105 8 C -0.106 4.106 9 C -0.124 4.124 10 C -0.117 4.117 11 C -0.134 4.134 12 C -0.125 4.125 13 C 0.052 3.948 14 N -0.520 5.520 15 C 0.030 3.970 16 C -0.143 4.143 17 C 0.217 3.783 18 O -0.573 6.573 19 C -0.544 4.544 20 H 0.039 0.961 21 C 0.041 3.959 22 N -0.935 5.935 23 Si 0.921 3.079 24 H -0.288 1.288 25 H -0.302 1.302 26 H -0.208 1.208 27 C 0.038 3.962 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.370 0.630 47 H 0.265 0.735 48 H 0.053 0.947 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 -11.026 4.667 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.150 4.150 3 H 0.072 0.928 4 C -0.021 4.021 5 O -0.317 6.317 6 C 0.026 3.974 7 C -0.105 4.105 8 C -0.123 4.123 9 C -0.142 4.142 10 C -0.135 4.135 11 C -0.151 4.151 12 C -0.143 4.143 13 C -0.076 4.076 14 N -0.243 5.243 15 C -0.098 4.098 16 C -0.181 4.181 17 C 0.177 3.823 18 O -0.380 6.380 19 C -0.582 4.582 20 H 0.058 0.942 21 C -0.159 4.159 22 N -0.574 5.574 23 Si 0.748 3.252 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.131 1.131 27 C -0.089 4.089 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.217 0.783 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.860 -10.596 3.850 19.459 hybrid contribution 0.973 0.932 0.829 1.582 sum -14.886 -9.664 4.679 18.355 Atomic orbital electron populations 1.21586 0.92370 1.02676 1.01815 1.21846 0.98631 1.00205 0.94332 0.92790 1.23164 0.98168 0.95870 0.84902 1.87911 1.74349 1.55783 1.13613 1.21350 0.97663 0.96041 0.82385 1.19752 0.96467 0.97586 0.96671 1.21302 0.93953 1.00528 0.96565 1.21523 1.00928 0.95558 0.96194 1.21553 0.94156 0.97474 1.00292 1.21401 0.97229 1.00022 0.96492 1.21245 1.00075 0.95710 0.97261 1.22512 0.87078 1.01940 0.96057 1.64952 1.07627 1.02434 1.49262 1.23199 0.95528 0.95196 0.95841 1.22937 0.98650 0.96869 0.99636 1.19800 0.87564 0.91918 0.83058 1.86517 1.24100 1.89978 1.37415 1.21651 1.45017 0.92448 0.99130 0.94229 1.25640 0.93361 0.97595 0.99307 1.70053 1.45935 1.05015 1.36380 0.86354 0.76945 0.78176 0.83748 1.21509 1.22975 1.13073 1.23636 0.95217 0.92516 0.97558 0.91007 0.93430 0.91630 0.93229 0.91074 0.94059 0.90279 0.84137 0.82814 0.83185 0.84925 0.88015 0.88271 0.89526 0.91583 0.89217 0.92559 0.90437 0.78279 0.92586 0.92921 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.97 71.98 0.65 -2.35 16 2 C -0.13 -3.86 2.13 -10.79 -0.02 -3.89 16 3 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 4 C 0.05 1.65 3.36 71.98 0.24 1.89 16 5 O -0.40 -13.27 9.74 -148.98 -1.45 -14.72 16 6 C 0.10 2.97 6.06 71.24 0.43 3.40 16 7 C -0.10 -3.01 5.51 -19.87 -0.11 -3.11 16 8 C -0.11 -2.40 9.70 22.27 0.22 -2.18 16 9 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 10 C -0.12 -2.37 10.05 22.27 0.22 -2.15 16 11 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 12 C -0.12 -3.87 9.70 22.27 0.22 -3.66 16 13 C 0.05 1.43 5.34 86.30 0.46 1.89 16 14 N -0.52 -18.08 5.54 -883.00 -4.89 -22.97 16 15 C 0.03 0.91 5.68 86.45 0.49 1.41 16 16 C -0.14 -5.34 5.73 31.47 0.18 -5.16 16 17 C 0.22 9.93 0.78 -10.34 -0.01 9.92 16 18 O -0.57 -25.83 10.28 -148.98 -1.53 -27.37 16 19 C -0.54 -30.47 8.82 25.60 0.23 -30.24 16 20 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 21 C 0.04 2.42 5.47 84.65 0.46 2.88 16 22 N -0.93 -58.57 13.96 21.45 0.30 -58.27 16 23 Si 0.92 46.84 24.25 68.60 1.66 48.50 16 24 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 25 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 26 H -0.21 -10.25 5.00 99.48 0.50 -9.76 16 27 C 0.04 1.65 3.46 86.65 0.30 1.95 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.26 7.83 -2.38 -0.02 1.24 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.74 3.77 -2.38 -0.01 1.74 16 32 H 0.07 1.71 7.69 -2.39 -0.02 1.70 16 33 H 0.04 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.08 1.81 8.09 -2.39 -0.02 1.80 16 35 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 39 H 0.10 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.10 2.13 7.90 -2.39 -0.02 2.11 16 41 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.07 1.81 4.39 -2.39 -0.01 1.80 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 2.19 7.43 -2.39 -0.02 2.18 16 45 H 0.08 2.63 8.08 -2.39 -0.02 2.61 16 46 H 0.37 14.45 9.09 -74.05 -0.67 13.78 16 47 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.05 2.47 4.75 -2.39 -0.01 2.45 16 49 H 0.06 2.88 4.10 -2.39 -0.01 2.87 16 Total: -1.00 -71.11 370.00 -1.44 -72.55 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: 0.06 Total: 37.01 kcal Atomic # 6 Polarization: -39.14 SS G_CDS: 4.40 Total: -34.74 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -4.59 Total: -81.25 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.98 Total: -42.09 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.66 Total: 48.50 kcal Total: -71.11 -1.44 -72.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886265629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.203 kcal (2) G-P(sol) polarization free energy of solvation -71.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds