Wall clock time and date at job start Tue Mar 31 2020 12:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 117.00268 * 2 1 4 4 C 1.38754 * 120.04908 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94086 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.05660 * 0.02562 * 5 4 3 7 7 C 1.38247 * 120.11057 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.97172 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47129 * 90.00256 * 8 7 6 10 10 H 1.08998 * 109.47110 * 54.99427 * 9 8 7 11 11 C 1.53001 * 109.46953 * 295.00156 * 9 8 7 12 12 C 1.52991 * 109.47580 * 175.00056 * 9 8 7 13 13 C 1.50699 * 109.47554 * 185.00250 * 12 9 8 14 14 O 1.21281 * 119.99780 * 359.97438 * 13 12 9 15 15 N 1.34776 * 119.99873 * 180.02562 * 13 12 9 16 16 C 1.46492 * 120.00320 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99725 * 180.02562 * 15 13 12 18 18 H 1.09003 * 109.47147 * 359.97438 * 17 15 13 19 19 C 1.53009 * 109.46773 * 239.99564 * 17 15 13 20 20 C 1.50699 * 109.47787 * 119.99574 * 17 15 13 21 21 H 1.07997 * 119.99542 * 5.35008 * 20 17 15 22 22 C 1.37873 * 120.00149 * 185.35708 * 20 17 15 23 23 N 1.31513 * 119.99945 * 5.15122 * 22 20 17 24 24 Si 1.86804 * 119.99910 * 185.15151 * 22 20 17 25 25 H 1.48500 * 109.47164 * 84.99518 * 24 22 20 26 26 H 1.48496 * 109.47169 * 204.99936 * 24 22 20 27 27 H 1.48498 * 109.47038 * 324.99819 * 24 22 20 28 28 C 1.38171 * 120.05789 * 0.23358 * 7 6 5 29 29 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47384 * 300.00497 * 1 2 3 31 31 H 1.08995 * 109.46973 * 60.00986 * 1 2 3 32 32 H 1.08001 * 120.03494 * 0.05536 * 4 3 2 33 33 H 1.07994 * 119.96886 * 180.02562 * 5 4 3 34 34 H 1.08001 * 119.94589 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47362 * 330.00551 * 8 7 6 36 36 H 1.09000 * 109.47381 * 209.99737 * 8 7 6 37 37 H 1.08999 * 109.47136 * 179.97438 * 11 9 8 38 38 H 1.08998 * 109.47061 * 299.99872 * 11 9 8 39 39 H 1.09000 * 109.47173 * 59.99657 * 11 9 8 40 40 H 1.09000 * 109.47287 * 64.99592 * 12 9 8 41 41 H 1.09001 * 109.47203 * 305.00163 * 12 9 8 42 42 H 1.09005 * 109.47450 * 270.00703 * 16 15 13 43 43 H 1.09000 * 109.47030 * 30.00990 * 16 15 13 44 44 H 1.09001 * 109.47202 * 150.00567 * 16 15 13 45 45 H 1.09002 * 109.46614 * 174.89286 * 19 17 15 46 46 H 1.09000 * 109.46775 * 294.88488 * 19 17 15 47 47 H 1.08994 * 109.46964 * 54.88884 * 19 17 15 48 48 H 0.97002 * 119.99743 * 180.02562 * 23 22 20 49 49 H 1.07993 * 120.03146 * 179.74089 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6759 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 5.5608 2.5982 -0.0033 9 6 6.0711 2.6257 1.4388 10 1 5.6828 1.7618 1.9782 11 6 5.5971 3.9094 2.1232 12 6 7.6004 2.5822 1.4396 13 6 8.0996 2.4853 2.8582 14 8 7.3099 2.4545 3.7781 15 7 9.4237 2.4338 3.1046 16 6 10.3776 2.4716 1.9935 17 6 9.9089 2.3391 4.4837 18 1 9.0600 2.3229 5.1672 19 6 10.7929 3.5479 4.7974 20 6 10.7110 1.0739 4.6483 21 1 10.9189 0.4511 3.7909 22 6 11.1791 0.7116 5.8935 23 7 10.8415 1.4139 6.9529 24 14 12.2930 -0.7769 6.0757 25 1 13.7000 -0.3766 5.8201 26 1 12.1747 -1.3179 7.4535 27 1 11.8897 -1.8195 5.0982 28 6 3.4311 1.2848 -0.0070 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.2128 2.3204 -0.0001 33 1 1.3339 4.5113 -0.0011 34 1 3.7922 4.6381 -0.0024 35 1 5.8753 3.5065 -0.5173 36 1 5.9711 1.7291 -0.5174 37 1 5.9603 3.9287 3.1507 38 1 5.9854 4.7733 1.5839 39 1 4.5075 3.9403 2.1227 40 1 7.9900 3.4898 0.9785 41 1 7.9395 1.7137 0.8750 42 1 10.5854 1.4554 1.6582 43 1 9.9536 3.0463 1.1700 44 1 11.3036 2.9411 2.3254 45 1 11.0799 3.5249 5.8487 46 1 11.6877 3.5146 4.1758 47 1 10.2410 4.4648 4.5913 48 1 11.1712 1.1592 7.8289 49 1 4.0206 0.3800 -0.0117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931941073.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:55 Heat of formation + Delta-G solvation = -83.094767 kcal Electronic energy + Delta-G solvation = -26716.278997 eV Core-core repulsion = 23028.444539 eV Total energy + Delta-G solvation = -3687.834458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18676 -40.74717 -38.88562 -37.30794 -36.19093 -34.74597 -32.51577 -31.64441 -31.07738 -28.45908 -28.31636 -27.47570 -27.30490 -27.19444 -23.74845 -23.20922 -22.16360 -20.93513 -19.71497 -18.73728 -18.46036 -17.69998 -17.21190 -17.04939 -16.85310 -16.63815 -16.47878 -16.11308 -15.43917 -15.27087 -14.83662 -14.54027 -14.40740 -14.37737 -13.99884 -13.85360 -13.53466 -13.41922 -13.16892 -13.01080 -12.89653 -12.86503 -12.72065 -12.59625 -12.56195 -12.46571 -12.24901 -12.09808 -12.05841 -11.92083 -11.73372 -11.51343 -11.49454 -11.16801 -10.56976 -10.35322 -9.70774 -9.24450 -9.09819 -8.15631 -6.30284 0.39757 0.53491 1.40219 1.41748 1.51128 1.94154 2.35596 2.39716 2.56119 2.84303 3.13485 3.76191 3.82564 3.90802 4.03500 4.12177 4.27901 4.31070 4.37270 4.40854 4.46369 4.49498 4.58504 4.61373 4.68901 4.71090 4.75386 4.80866 4.81652 4.85516 4.88224 4.94974 5.03037 5.09016 5.10895 5.13259 5.22821 5.37176 5.46593 5.49289 5.54279 5.58116 5.60755 5.71851 5.75463 5.90346 6.04910 6.15771 6.48915 6.79709 6.94177 7.36013 7.59919 8.90785 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018696 B = 0.002487 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.314194 B =11254.373032 C =11969.377559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.108 3.892 4 C -0.220 4.220 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.042 4.042 8 C -0.068 4.068 9 C -0.063 4.063 10 H 0.043 0.957 11 C -0.147 4.147 12 C -0.122 4.122 13 C 0.489 3.511 14 O -0.601 6.601 15 N -0.606 5.606 16 C 0.082 3.918 17 C 0.258 3.742 18 H 0.009 0.991 19 C -0.125 4.125 20 C -0.537 4.537 21 H 0.061 0.939 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.964 3.036 25 H -0.265 1.265 26 H -0.288 1.288 27 H -0.270 1.270 28 C -0.174 4.174 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.263 0.737 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.440 4.568 -20.737 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.257 6.257 3 C 0.063 3.937 4 C -0.239 4.239 5 C -0.102 4.102 6 C -0.175 4.175 7 C -0.043 4.043 8 C -0.105 4.105 9 C -0.082 4.082 10 H 0.061 0.939 11 C -0.205 4.205 12 C -0.161 4.161 13 C 0.279 3.721 14 O -0.484 6.484 15 N -0.337 5.337 16 C -0.060 4.060 17 C 0.156 3.844 18 H 0.027 0.973 19 C -0.183 4.183 20 C -0.575 4.575 21 H 0.079 0.921 22 C -0.187 4.187 23 N -0.561 5.561 24 Si 0.789 3.211 25 H -0.190 1.190 26 H -0.213 1.213 27 H -0.195 1.195 28 C -0.192 4.192 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.086 0.914 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.710 4.366 -20.077 25.864 hybrid contribution 0.307 -0.926 1.083 1.458 sum -15.403 3.440 -18.994 24.695 Atomic orbital electron populations 1.23303 0.76588 1.05375 1.02176 1.86042 1.23441 1.27329 1.88879 1.19246 0.92561 0.84864 0.97005 1.21469 1.00918 0.92148 1.09327 1.21278 0.94822 0.97681 0.96422 1.21265 0.94070 0.98522 1.03676 1.19820 0.96444 0.92055 0.95943 1.20692 0.89694 1.04823 0.95331 1.20726 0.93003 0.98690 0.95766 0.93860 1.21922 1.01006 0.97044 1.00484 1.21792 0.96598 1.06121 0.91605 1.21552 0.81916 0.75700 0.92893 1.90602 1.55842 1.53032 1.48876 1.48284 1.06134 1.70524 1.08771 1.21821 0.93503 1.01998 0.88689 1.18498 0.92943 0.94088 0.78910 0.97273 1.21794 0.99097 0.95981 1.01477 1.21588 1.33758 1.07897 0.94296 0.92106 1.25784 0.97805 0.99822 0.95314 1.70094 1.45199 1.41687 0.99116 0.85488 0.79432 0.79147 0.77073 1.19000 1.21348 1.19498 1.20505 0.91884 0.98788 1.08047 0.86648 0.92099 0.91385 0.83737 0.83365 0.84104 0.88026 0.89627 0.94575 0.91114 0.92543 0.85950 0.87175 0.92927 0.88205 0.91356 0.93268 0.92955 0.95475 0.92770 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.78 10.50 -92.47 -0.97 -8.76 16 3 C 0.11 2.54 6.69 22.51 0.15 2.69 16 4 C -0.22 -4.16 9.04 22.37 0.20 -3.96 16 5 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 6 C -0.16 -2.95 7.96 22.28 0.18 -2.78 16 7 C -0.04 -0.91 4.71 -19.88 -0.09 -1.01 16 8 C -0.07 -1.28 4.84 29.85 0.14 -1.14 16 9 C -0.06 -1.66 2.03 -10.80 -0.02 -1.68 16 10 H 0.04 1.45 7.96 -2.39 -0.02 1.43 16 11 C -0.15 -4.10 8.50 71.98 0.61 -3.49 16 12 C -0.12 -3.19 3.73 29.84 0.11 -3.07 16 13 C 0.49 20.04 7.39 87.66 0.65 20.68 16 14 O -0.60 -30.92 13.29 -3.03 -0.04 -30.96 16 15 N -0.61 -25.62 2.75 -826.79 -2.28 -27.89 16 16 C 0.08 2.48 9.43 127.77 1.20 3.69 16 17 C 0.26 13.69 2.51 44.25 0.11 13.80 16 18 H 0.01 0.60 6.88 -2.39 -0.02 0.58 16 19 C -0.12 -6.02 8.84 71.99 0.64 -5.39 16 20 C -0.54 -29.81 8.34 25.60 0.21 -29.60 16 21 H 0.06 3.26 7.51 -2.91 -0.02 3.24 16 22 C 0.01 0.68 5.29 84.65 0.45 1.13 16 23 N -0.92 -55.22 11.99 21.45 0.26 -54.96 16 24 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C -0.17 -4.26 9.64 22.37 0.22 -4.04 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.07 0.67 7.66 -2.39 -0.02 0.66 16 32 H 0.14 1.98 6.30 -2.91 -0.02 1.96 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.09 8.04 -2.91 -0.02 2.07 16 35 H 0.10 1.40 8.08 -2.39 -0.02 1.38 16 36 H 0.09 1.42 8.08 -2.39 -0.02 1.41 16 37 H 0.04 1.32 5.95 -2.39 -0.01 1.31 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.49 6.27 -2.39 -0.01 1.47 16 40 H 0.12 2.35 7.40 -2.39 -0.02 2.34 16 41 H 0.11 2.41 8.11 -2.39 -0.02 2.39 16 42 H 0.05 1.54 8.09 -2.38 -0.02 1.52 16 43 H 0.10 2.06 6.44 -2.39 -0.02 2.05 16 44 H 0.07 2.10 6.54 -2.39 -0.02 2.08 16 45 H 0.05 2.63 6.84 -2.39 -0.02 2.61 16 46 H 0.05 2.27 6.88 -2.39 -0.02 2.25 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.00 387.70 6.01 -70.99 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.92 Total: 19.60 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 6.09 Total: -14.02 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.02 Total: -82.85 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.01 Total: -39.72 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -77.00 6.01 -70.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931941073.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.107 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds