Wall clock time and date at job start Tue Mar 31 2020 12:47:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34236 * 116.99952 * 2 1
4 4 O 1.20822 * 119.99896 * 0.02562 * 3 2 1
5 5 C 1.50696 * 119.99887 * 179.97438 * 3 2 1
6 6 H 1.09007 * 109.46988 * 60.00511 * 5 3 2
7 7 C 1.52999 * 109.47554 * 300.00784 * 5 3 2
8 8 C 1.53005 * 109.47259 * 175.00045 * 7 5 3
9 9 C 1.50699 * 109.46860 * 179.97438 * 8 7 5
10 10 C 1.38239 * 120.00092 * 269.72470 * 9 8 7
11 11 C 1.38235 * 119.99687 * 179.76588 * 10 9 8
12 12 C 1.38239 * 120.00119 * 0.51304 * 11 10 9
13 13 C 1.38227 * 119.99839 * 359.73872 * 12 11 10
14 14 C 1.38230 * 120.00045 * 89.99887 * 9 8 7
15 15 N 1.46898 * 109.46930 * 180.02562 * 5 3 2
16 16 C 1.46899 * 111.00116 * 274.99811 * 15 5 3
17 17 H 1.09006 * 109.47263 * 325.00702 * 16 15 5
18 18 C 1.53008 * 109.46699 * 85.00212 * 16 15 5
19 19 C 1.52996 * 109.47415 * 204.99990 * 16 15 5
20 20 C 1.52998 * 109.46929 * 65.00517 * 19 16 15
21 21 C 1.50706 * 109.47348 * 179.97438 * 20 19 16
22 22 H 1.08000 * 119.99302 * 359.97438 * 21 20 19
23 23 C 1.37871 * 120.00436 * 179.72505 * 21 20 19
24 24 N 1.31515 * 119.99684 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00405 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47154 * 89.99418 * 25 23 21
27 27 H 1.48493 * 109.47010 * 209.99942 * 25 23 21
28 28 H 1.48502 * 109.46736 * 329.99638 * 25 23 21
29 29 H 1.08995 * 109.47305 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47105 * 299.99554 * 1 2 3
31 31 H 1.09002 * 109.47141 * 59.99623 * 1 2 3
32 32 H 1.09007 * 109.46657 * 294.99890 * 7 5 3
33 33 H 1.08995 * 109.47051 * 54.99573 * 7 5 3
34 34 H 1.08994 * 109.46866 * 299.99681 * 8 7 5
35 35 H 1.08998 * 109.46989 * 59.99663 * 8 7 5
36 36 H 1.07997 * 119.99964 * 359.97438 * 10 9 8
37 37 H 1.08002 * 119.99959 * 180.23088 * 11 10 9
38 38 H 1.07999 * 119.99858 * 179.72093 * 12 11 10
39 39 H 1.08007 * 120.00019 * 179.97438 * 13 12 11
40 40 H 1.08001 * 120.00145 * 0.02562 * 14 9 8
41 41 H 1.00898 * 111.00424 * 38.95922 * 15 5 3
42 42 H 1.08999 * 109.47043 * 180.02562 * 18 16 15
43 43 H 1.09002 * 109.46750 * 300.00094 * 18 16 15
44 44 H 1.08999 * 109.47047 * 60.00538 * 18 16 15
45 45 H 1.09000 * 109.47441 * 305.00607 * 19 16 15
46 46 H 1.09002 * 109.47087 * 185.00053 * 19 16 15
47 47 H 1.09001 * 109.47671 * 60.00109 * 20 19 16
48 48 H 1.08998 * 109.47454 * 300.00107 * 20 19 16
49 49 H 0.97004 * 120.00247 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1961 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 0.0006
6 1 3.9564 0.7806 -0.8893
7 6 4.1130 0.5814 1.2500
8 6 5.6415 0.5516 1.1893
9 6 6.1799 -0.1309 2.4203
10 6 6.4752 0.6111 3.5487
11 6 6.9645 -0.0157 4.6795
12 6 7.1684 -1.3829 4.6784
13 6 6.8780 -2.1241 3.5483
14 6 6.3837 -1.4981 2.4193
15 7 3.9828 2.6836 0.0011
16 6 4.0180 3.2227 -1.3650
17 1 4.3418 2.4434 -2.0549
18 6 2.6202 3.7043 -1.7593
19 6 4.9976 4.3964 -1.4251
20 6 6.4159 3.8913 -1.1527
21 6 7.3809 5.0473 -1.2125
22 1 7.0188 6.0426 -1.4241
23 6 8.7253 4.8352 -0.9921
24 7 9.1654 3.6241 -0.7291
25 14 9.9214 6.2681 -1.0655
26 1 10.0497 6.8754 0.2836
27 1 11.2495 5.7816 -1.5178
28 1 9.4157 7.2865 -2.0207
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 3.7952 1.1287 2.1376
33 1 3.7312 -0.4384 1.2959
34 1 5.9592 0.0045 0.3018
35 1 6.0232 1.5715 1.1434
36 1 6.3205 1.6800 3.5479
37 1 7.1917 0.5635 5.5623
38 1 7.5549 -1.8719 5.5603
39 1 7.0377 -3.1923 3.5473
40 1 6.1576 -2.0771 1.5361
41 1 3.3827 3.2379 0.5933
42 1 2.6462 4.1039 -2.7730
43 1 1.9223 2.8681 -1.7164
44 1 2.2964 4.4836 -1.0694
45 1 4.7247 5.1364 -0.6727
46 1 4.9580 4.8524 -2.4143
47 1 6.6889 3.1514 -1.9051
48 1 6.4555 3.4353 -0.1635
49 1 10.1112 3.4748 -0.5736
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172490084.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:36
Heat of formation + Delta-G solvation = -80.137409 kcal
Electronic energy + Delta-G solvation = -27308.619475 eV
Core-core repulsion = 23620.913258 eV
Total energy + Delta-G solvation = -3687.706217 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.79188 -39.09421 -37.67872 -36.15295 -34.73307 -33.00404 -31.74695 -30.69991
-29.63638 -28.21233 -28.15211 -25.71650 -24.88177 -22.82972 -22.37681 -21.45856
-20.67159 -20.53059 -19.76425 -17.70073 -17.06790 -16.55393 -16.46808 -16.09501
-15.43323 -14.98952 -14.81434 -14.61205 -14.29456 -13.92599 -13.63266 -13.31989
-13.18451 -13.02133 -12.84251 -12.76736 -12.38376 -12.27369 -12.04687 -11.93599
-11.85964 -11.59388 -11.21423 -11.09148 -11.00663 -10.86300 -10.79327 -10.72393
-10.53255 -10.43654 -10.27435 -10.05844 -9.61492 -9.20106 -8.89193 -8.73907
-8.49962 -8.24738 -8.12571 -5.87376 -3.87980 1.54348 1.58510 2.13231
2.68177 3.38240 3.44631 3.47802 3.97004 4.28763 4.55606 4.64570
4.92773 4.93421 5.00279 5.02994 5.11802 5.12968 5.24779 5.32982
5.41055 5.46013 5.48432 5.53027 5.66471 5.69346 5.73739 5.79956
5.84058 5.96796 6.10886 6.14084 6.20379 6.29336 6.34106 6.39136
6.54666 6.63710 6.64270 6.68088 6.71514 6.89380 6.96460 7.20755
7.23161 7.34964 7.63193 7.71854 7.85856 8.08157 8.22258 8.59107
9.20113 9.74664 11.23285
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.007134 B = 0.004862 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3924.155144 B = 5758.104160 C = 9230.521014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.359 6.359
3 C 0.428 3.572
4 O -0.501 6.501
5 C 0.098 3.902
6 H 0.116 0.884
7 C -0.090 4.090
8 C -0.078 4.078
9 C -0.068 4.068
10 C -0.111 4.111
11 C -0.121 4.121
12 C -0.133 4.133
13 C -0.124 4.124
14 C -0.120 4.120
15 N -0.636 5.636
16 C 0.079 3.921
17 H 0.072 0.928
18 C -0.180 4.180
19 C -0.097 4.097
20 C 0.030 3.970
21 C -0.519 4.519
22 H 0.050 0.950
23 C 0.059 3.941
24 N -0.892 5.892
25 Si 0.884 3.116
26 H -0.282 1.282
27 H -0.288 1.288
28 H -0.276 1.276
29 H 0.098 0.902
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.072 0.928
35 H 0.104 0.896
36 H 0.125 0.875
37 H 0.117 0.883
38 H 0.115 0.885
39 H 0.116 0.884
40 H 0.119 0.881
41 H 0.349 0.651
42 H 0.049 0.951
43 H 0.056 0.944
44 H 0.055 0.945
45 H 0.048 0.952
46 H 0.048 0.952
47 H 0.007 0.993
48 H 0.033 0.967
49 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.383 -12.498 6.244 19.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.061 4.061
2 O -0.275 6.275
3 C 0.269 3.731
4 O -0.389 6.389
5 C -0.015 4.015
6 H 0.134 0.866
7 C -0.128 4.128
8 C -0.115 4.115
9 C -0.068 4.068
10 C -0.129 4.129
11 C -0.139 4.139
12 C -0.151 4.151
13 C -0.142 4.142
14 C -0.138 4.138
15 N -0.268 5.268
16 C -0.030 4.030
17 H 0.090 0.910
18 C -0.238 4.238
19 C -0.135 4.135
20 C -0.007 4.007
21 C -0.557 4.557
22 H 0.068 0.932
23 C -0.142 4.142
24 N -0.532 5.532
25 Si 0.712 3.288
26 H -0.208 1.208
27 H -0.214 1.214
28 H -0.201 1.201
29 H 0.116 0.884
30 H 0.079 0.921
31 H 0.078 0.922
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.090 0.910
35 H 0.122 0.878
36 H 0.143 0.857
37 H 0.136 0.864
38 H 0.133 0.867
39 H 0.134 0.866
40 H 0.137 0.863
41 H 0.170 0.830
42 H 0.069 0.931
43 H 0.075 0.925
44 H 0.074 0.926
45 H 0.066 0.934
46 H 0.066 0.934
47 H 0.025 0.975
48 H 0.052 0.948
49 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -12.777 -12.428 6.291 18.902
hybrid contribution -0.448 0.963 -0.235 1.088
sum -13.226 -11.465 6.055 18.521
Atomic orbital electron populations
1.23218 0.77211 1.03367 1.02281 1.86578 1.22862 1.34092 1.83932
1.25702 0.94098 0.81317 0.71939 1.90647 1.67256 1.36182 1.44812
1.21789 0.83554 0.93792 1.02347 0.86630 1.21463 0.96188 0.99641
0.95530 1.20595 0.93346 1.03274 0.94285 1.20018 0.97582 0.93481
0.95700 1.21187 0.98699 1.00248 0.92734 1.21137 0.99709 0.94726
0.98336 1.21060 1.01440 0.94366 0.98259 1.21073 1.00004 0.99504
0.93615 1.21079 1.00159 0.94376 0.98215 1.60994 1.54114 0.99644
1.12000 1.21922 0.94422 0.98651 0.88024 0.90987 1.22709 0.98081
1.01879 1.01165 1.21626 0.97242 0.94873 0.99808 1.19014 0.88250
0.95679 0.97748 1.21335 0.92302 0.94645 1.47443 0.93202 1.24957
0.98327 0.95272 0.95646 1.69963 1.14365 1.20016 1.48858 0.86726
0.80768 0.83087 0.78174 1.20829 1.21396 1.20094 0.88399 0.92111
0.92191 0.91445 0.90941 0.90970 0.87779 0.85704 0.86450 0.86713
0.86602 0.86270 0.82959 0.93149 0.92509 0.92625 0.93365 0.93372
0.97453 0.94834 0.93286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 10.56 101.05 1.07 1.36 16
2 O -0.36 -4.18 10.37 -39.27 -0.41 -4.59 16
3 C 0.43 5.61 6.54 36.00 0.24 5.85 16
4 O -0.50 -7.50 12.16 -18.75 -0.23 -7.73 16
5 C 0.10 1.28 2.50 -68.87 -0.17 1.11 16
6 H 0.12 1.46 7.43 -51.92 -0.39 1.08 16
7 C -0.09 -1.10 4.84 -26.73 -0.13 -1.23 16
8 C -0.08 -1.10 5.23 -27.88 -0.15 -1.25 16
9 C -0.07 -0.95 5.13 -104.62 -0.54 -1.49 16
10 C -0.11 -1.56 9.70 -39.58 -0.38 -1.94 16
11 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16
12 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16
13 C -0.12 -1.45 10.05 -39.59 -0.40 -1.85 16
14 C -0.12 -1.52 9.70 -39.58 -0.38 -1.91 16
15 N -0.64 -9.78 4.93 -100.95 -0.50 -10.28 16
16 C 0.08 1.31 2.59 -67.71 -0.18 1.14 16
17 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16
18 C -0.18 -2.73 8.00 37.16 0.30 -2.43 16
19 C -0.10 -1.98 4.83 -26.73 -0.13 -2.11 16
20 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16
21 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16
22 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16
23 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
24 N -0.89 -26.63 13.29 55.43 0.74 -25.90 16
25 Si 0.88 21.89 29.54 -169.99 -5.02 16.87 16
26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
27 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16
28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16
31 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16
32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
33 H 0.07 0.80 7.99 -51.93 -0.42 0.38 16
34 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16
35 H 0.10 1.81 7.38 -51.93 -0.38 1.43 16
36 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16
37 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16
38 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16
39 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16
40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
41 H 0.35 5.39 7.51 -39.29 -0.30 5.10 16
42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
43 H 0.06 0.86 5.07 -51.93 -0.26 0.59 16
44 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16
45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
47 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
48 H 0.03 0.88 7.44 -51.93 -0.39 0.50 16
49 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16
LS Contribution 398.73 15.07 6.01 6.01
Total: -1.00 -31.31 398.73 -10.00 -41.31
By element:
Atomic # 1 Polarization: 14.14 SS G_CDS: -8.39 Total: 5.75 kcal
Atomic # 6 Polarization: -19.25 SS G_CDS: -2.20 Total: -21.44 kcal
Atomic # 7 Polarization: -36.41 SS G_CDS: 0.24 Total: -36.17 kcal
Atomic # 8 Polarization: -11.68 SS G_CDS: -0.64 Total: -12.32 kcal
Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -31.31 -10.00 -41.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172490084.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.831 kcal
(2) G-P(sol) polarization free energy of solvation -31.307 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.137 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds