Wall clock time and date at job start Tue Mar 31 2020 12:47:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34236 * 116.99952 * 2 1
4 4 O 1.20822 * 119.99896 * 0.02562 * 3 2 1
5 5 C 1.50696 * 119.99887 * 179.97438 * 3 2 1
6 6 H 1.09007 * 109.46988 * 60.00511 * 5 3 2
7 7 C 1.52999 * 109.47554 * 300.00784 * 5 3 2
8 8 C 1.53005 * 109.47259 * 175.00045 * 7 5 3
9 9 C 1.50699 * 109.46860 * 179.97438 * 8 7 5
10 10 C 1.38239 * 120.00092 * 269.72470 * 9 8 7
11 11 C 1.38235 * 119.99687 * 179.76588 * 10 9 8
12 12 C 1.38239 * 120.00119 * 0.51304 * 11 10 9
13 13 C 1.38227 * 119.99839 * 359.73872 * 12 11 10
14 14 C 1.38230 * 120.00045 * 89.99887 * 9 8 7
15 15 N 1.46898 * 109.46930 * 180.02562 * 5 3 2
16 16 C 1.46899 * 111.00116 * 274.99811 * 15 5 3
17 17 H 1.09006 * 109.47263 * 325.00702 * 16 15 5
18 18 C 1.53008 * 109.46699 * 85.00212 * 16 15 5
19 19 C 1.52996 * 109.47415 * 204.99990 * 16 15 5
20 20 C 1.52998 * 109.46929 * 65.00517 * 19 16 15
21 21 C 1.50706 * 109.47348 * 179.97438 * 20 19 16
22 22 H 1.08000 * 119.99302 * 359.97438 * 21 20 19
23 23 C 1.37871 * 120.00436 * 179.72505 * 21 20 19
24 24 N 1.31515 * 119.99684 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00405 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47154 * 89.99418 * 25 23 21
27 27 H 1.48493 * 109.47010 * 209.99942 * 25 23 21
28 28 H 1.48502 * 109.46736 * 329.99638 * 25 23 21
29 29 H 1.08995 * 109.47305 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47105 * 299.99554 * 1 2 3
31 31 H 1.09002 * 109.47141 * 59.99623 * 1 2 3
32 32 H 1.09007 * 109.46657 * 294.99890 * 7 5 3
33 33 H 1.08995 * 109.47051 * 54.99573 * 7 5 3
34 34 H 1.08994 * 109.46866 * 299.99681 * 8 7 5
35 35 H 1.08998 * 109.46989 * 59.99663 * 8 7 5
36 36 H 1.07997 * 119.99964 * 359.97438 * 10 9 8
37 37 H 1.08002 * 119.99959 * 180.23088 * 11 10 9
38 38 H 1.07999 * 119.99858 * 179.72093 * 12 11 10
39 39 H 1.08007 * 120.00019 * 179.97438 * 13 12 11
40 40 H 1.08001 * 120.00145 * 0.02562 * 14 9 8
41 41 H 1.00898 * 111.00424 * 38.95922 * 15 5 3
42 42 H 1.08999 * 109.47043 * 180.02562 * 18 16 15
43 43 H 1.09002 * 109.46750 * 300.00094 * 18 16 15
44 44 H 1.08999 * 109.47047 * 60.00538 * 18 16 15
45 45 H 1.09000 * 109.47441 * 305.00607 * 19 16 15
46 46 H 1.09002 * 109.47087 * 185.00053 * 19 16 15
47 47 H 1.09001 * 109.47671 * 60.00109 * 20 19 16
48 48 H 1.08998 * 109.47454 * 300.00107 * 20 19 16
49 49 H 0.97004 * 120.00247 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1961 0.0000
4 8 1.4033 2.2093 0.0005
5 6 3.5663 1.2749 0.0006
6 1 3.9564 0.7806 -0.8893
7 6 4.1130 0.5814 1.2500
8 6 5.6415 0.5516 1.1893
9 6 6.1799 -0.1309 2.4203
10 6 6.4752 0.6111 3.5487
11 6 6.9645 -0.0157 4.6795
12 6 7.1684 -1.3829 4.6784
13 6 6.8780 -2.1241 3.5483
14 6 6.3837 -1.4981 2.4193
15 7 3.9828 2.6836 0.0011
16 6 4.0180 3.2227 -1.3650
17 1 4.3418 2.4434 -2.0549
18 6 2.6202 3.7043 -1.7593
19 6 4.9976 4.3964 -1.4251
20 6 6.4159 3.8913 -1.1527
21 6 7.3809 5.0473 -1.2125
22 1 7.0188 6.0426 -1.4241
23 6 8.7253 4.8352 -0.9921
24 7 9.1654 3.6241 -0.7291
25 14 9.9214 6.2681 -1.0655
26 1 10.0497 6.8754 0.2836
27 1 11.2495 5.7816 -1.5178
28 1 9.4157 7.2865 -2.0207
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 3.7952 1.1287 2.1376
33 1 3.7312 -0.4384 1.2959
34 1 5.9592 0.0045 0.3018
35 1 6.0232 1.5715 1.1434
36 1 6.3205 1.6800 3.5479
37 1 7.1917 0.5635 5.5623
38 1 7.5549 -1.8719 5.5603
39 1 7.0377 -3.1923 3.5473
40 1 6.1576 -2.0771 1.5361
41 1 3.3827 3.2379 0.5933
42 1 2.6462 4.1039 -2.7730
43 1 1.9223 2.8681 -1.7164
44 1 2.2964 4.4836 -1.0694
45 1 4.7247 5.1364 -0.6727
46 1 4.9580 4.8524 -2.4143
47 1 6.6889 3.1514 -1.9051
48 1 6.4555 3.4353 -0.1635
49 1 10.1112 3.4748 -0.5736
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172490084.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:35
Heat of formation + Delta-G solvation = -95.885921 kcal
Electronic energy + Delta-G solvation = -27309.302382 eV
Core-core repulsion = 23620.913258 eV
Total energy + Delta-G solvation = -3688.389124 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.83819 -40.08142 -38.84612 -37.26236 -36.06973 -34.89369 -33.10898 -31.66846
-31.29737 -29.45560 -28.98183 -27.04849 -26.53802 -23.84972 -23.35957 -23.22816
-21.78391 -21.63110 -21.23013 -18.73471 -18.31965 -18.08961 -17.54895 -17.42989
-16.56647 -16.48219 -16.01772 -15.94578 -15.58908 -14.98906 -14.79331 -14.59605
-14.29433 -14.20433 -14.11211 -13.90808 -13.85222 -13.62867 -13.40873 -13.07283
-12.98036 -12.89950 -12.83752 -12.68394 -12.41989 -12.26801 -12.02115 -11.94180
-11.73218 -11.63321 -11.55149 -11.48636 -11.41535 -11.11757 -10.84453 -10.42281
-9.72391 -9.56089 -9.37473 -8.08923 -6.17691 0.55403 0.59661 1.09125
1.41559 1.42036 1.52597 1.74990 2.46423 2.97983 3.08095 3.23658
3.63804 3.90720 3.94297 4.06695 4.16093 4.22786 4.26870 4.30649
4.32269 4.37020 4.41561 4.43073 4.51951 4.62972 4.70748 4.76525
4.78258 4.79794 4.91467 4.94315 5.03101 5.08751 5.15344 5.21848
5.27486 5.30755 5.38852 5.47988 5.53498 5.64723 5.67602 5.70615
5.88422 5.89962 6.05108 6.13389 6.24304 6.37432 6.41182 6.69486
7.00905 7.49416 9.01281
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.007134 B = 0.004862 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3924.155144 B = 5758.104160 C = 9230.521014
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.360 6.360
3 C 0.436 3.564
4 O -0.521 6.521
5 C 0.100 3.900
6 H 0.121 0.879
7 C -0.076 4.076
8 C -0.068 4.068
9 C -0.086 4.086
10 C -0.136 4.136
11 C -0.129 4.129
12 C -0.135 4.135
13 C -0.124 4.124
14 C -0.129 4.129
15 N -0.649 5.649
16 C 0.089 3.911
17 H 0.071 0.929
18 C -0.166 4.166
19 C -0.086 4.086
20 C 0.041 3.959
21 C -0.543 4.543
22 H 0.050 0.950
23 C 0.006 3.994
24 N -0.924 5.924
25 Si 0.951 3.049
26 H -0.276 1.276
27 H -0.283 1.283
28 H -0.267 1.267
29 H 0.130 0.870
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.063 0.937
33 H 0.092 0.908
34 H 0.069 0.931
35 H 0.063 0.937
36 H 0.111 0.889
37 H 0.133 0.867
38 H 0.143 0.857
39 H 0.145 0.855
40 H 0.135 0.865
41 H 0.348 0.652
42 H 0.057 0.943
43 H 0.061 0.939
44 H 0.050 0.950
45 H 0.043 0.957
46 H 0.048 0.952
47 H -0.018 1.018
48 H 0.014 0.986
49 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.041 -13.671 6.630 20.688
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.275 6.275
3 C 0.278 3.722
4 O -0.411 6.411
5 C -0.012 4.012
6 H 0.139 0.861
7 C -0.114 4.114
8 C -0.105 4.105
9 C -0.086 4.086
10 C -0.154 4.154
11 C -0.147 4.147
12 C -0.153 4.153
13 C -0.142 4.142
14 C -0.147 4.147
15 N -0.280 5.280
16 C -0.021 4.021
17 H 0.090 0.910
18 C -0.224 4.224
19 C -0.124 4.124
20 C 0.004 3.996
21 C -0.581 4.581
22 H 0.068 0.932
23 C -0.192 4.192
24 N -0.565 5.565
25 Si 0.777 3.223
26 H -0.201 1.201
27 H -0.208 1.208
28 H -0.192 1.192
29 H 0.148 0.852
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.082 0.918
33 H 0.110 0.890
34 H 0.087 0.913
35 H 0.082 0.918
36 H 0.129 0.871
37 H 0.151 0.849
38 H 0.161 0.839
39 H 0.163 0.837
40 H 0.153 0.847
41 H 0.169 0.831
42 H 0.076 0.924
43 H 0.080 0.920
44 H 0.069 0.931
45 H 0.062 0.938
46 H 0.067 0.933
47 H 0.000 1.000
48 H 0.032 0.968
49 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -13.453 -13.609 6.675 20.267
hybrid contribution -0.254 1.248 -0.318 1.313
sum -13.708 -12.361 6.357 19.522
Atomic orbital electron populations
1.23518 0.75300 1.05542 1.02268 1.86550 1.24651 1.32893 1.83403
1.25415 0.93788 0.81529 0.71453 1.90638 1.67589 1.36914 1.45920
1.21733 0.84201 0.92329 1.02965 0.86124 1.21354 0.94664 1.00504
0.94920 1.20403 0.94671 1.00802 0.94667 1.20067 0.98662 0.94427
0.95396 1.21252 1.00357 0.99898 0.93919 1.21386 0.99383 0.95688
0.98275 1.21435 1.00573 0.93923 0.99349 1.21457 0.98740 1.01010
0.92989 1.21315 1.00131 0.93779 0.99435 1.60889 1.54931 1.00934
1.11282 1.21688 0.94375 0.97158 0.88859 0.91038 1.22556 0.96714
1.01833 1.01344 1.21432 0.95324 0.96169 0.99508 1.18823 0.90799
0.94225 0.95730 1.21782 0.93404 0.95436 1.47499 0.93200 1.25797
1.00230 0.97970 0.95163 1.70095 1.14789 1.22067 1.49508 0.85659
0.78330 0.79826 0.78490 1.20134 1.20839 1.19157 0.85185 0.92126
0.92252 0.91840 0.88953 0.91256 0.91813 0.87108 0.84933 0.83949
0.83741 0.84677 0.83073 0.92426 0.92003 0.93053 0.93791 0.93319
0.99989 0.96775 0.93193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.42 10.56 113.37 1.20 1.61 16
2 O -0.36 -7.72 10.37 -51.47 -0.53 -8.25 16
3 C 0.44 11.03 6.54 71.23 0.47 11.50 16
4 O -0.52 -15.18 12.16 21.98 0.27 -14.91 16
5 C 0.10 2.62 2.50 44.17 0.11 2.73 16
6 H 0.12 3.04 7.43 -2.38 -0.02 3.02 16
7 C -0.08 -1.88 4.84 30.60 0.15 -1.73 16
8 C -0.07 -2.03 5.23 29.85 0.16 -1.87 16
9 C -0.09 -2.46 5.13 -19.87 -0.10 -2.56 16
10 C -0.14 -4.01 9.70 22.27 0.22 -3.79 16
11 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16
12 C -0.14 -2.91 10.05 22.27 0.22 -2.68 16
13 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16
14 C -0.13 -3.14 9.70 22.27 0.22 -2.92 16
15 N -0.65 -20.56 4.93 -473.30 -2.33 -22.90 16
16 C 0.09 2.98 2.59 44.92 0.12 3.10 16
17 H 0.07 2.41 7.43 -2.38 -0.02 2.39 16
18 C -0.17 -4.92 8.00 71.98 0.58 -4.35 16
19 C -0.09 -3.60 4.83 30.59 0.15 -3.45 16
20 C 0.04 2.17 4.86 29.85 0.15 2.32 16
21 C -0.54 -31.50 9.11 25.60 0.23 -31.27 16
22 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16
23 C 0.01 0.37 5.46 84.65 0.46 0.83 16
24 N -0.92 -56.55 13.29 21.45 0.28 -56.27 16
25 Si 0.95 45.30 29.54 68.60 2.03 47.33 16
26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16
28 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
29 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16
30 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16
31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16
32 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16
33 H 0.09 1.93 7.99 -2.39 -0.02 1.91 16
34 H 0.07 2.04 8.09 -2.39 -0.02 2.02 16
35 H 0.06 2.42 7.38 -2.39 -0.02 2.40 16
36 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16
37 H 0.13 2.76 8.06 -2.91 -0.02 2.73 16
38 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16
39 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16
40 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16
41 H 0.35 11.05 7.51 -89.70 -0.67 10.37 16
42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.06 1.80 5.07 -2.39 -0.01 1.79 16
44 H 0.05 1.56 8.13 -2.39 -0.02 1.54 16
45 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16
46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
47 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16
48 H 0.01 0.78 7.44 -2.39 -0.02 0.76 16
49 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16
Total: -1.00 -68.28 398.73 4.71 -63.56
By element:
Atomic # 1 Polarization: 29.14 SS G_CDS: 0.24 Total: 29.38 kcal
Atomic # 6 Polarization: -42.71 SS G_CDS: 4.76 Total: -37.95 kcal
Atomic # 7 Polarization: -77.12 SS G_CDS: -2.05 Total: -79.16 kcal
Atomic # 8 Polarization: -22.90 SS G_CDS: -0.27 Total: -23.16 kcal
Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal
Total: -68.28 4.71 -63.56 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172490084.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.321 kcal
(2) G-P(sol) polarization free energy of solvation -68.276 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds