Wall clock time and date at job start Tue Mar 31 2020 12:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35992 * 117.00239 * 2 1 4 4 C 1.38565 * 120.07256 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.00065 * 180.02562 * 4 3 2 6 6 C 1.38249 * 120.14260 * 359.97438 * 5 4 3 7 7 C 1.38240 * 120.15318 * 0.02562 * 6 5 4 8 8 C 1.38571 * 119.99552 * 359.71926 * 7 6 5 9 9 O 1.35989 * 120.07488 * 180.27440 * 8 7 6 10 10 C 1.42901 * 117.00150 * 357.34393 * 9 8 7 11 11 H 1.08999 * 110.28692 * 321.74925 * 10 9 8 12 12 C 1.54255 * 110.32490 * 83.87374 * 10 9 8 13 13 C 1.54381 * 105.06073 * 118.89906 * 12 10 9 14 14 N 1.48557 * 104.59348 * 23.85436 * 13 12 10 15 15 C 1.46900 * 110.99761 * 200.95842 * 14 13 12 16 16 H 1.09002 * 109.47009 * 61.26380 * 15 14 13 17 17 C 1.52996 * 109.47011 * 181.26339 * 15 14 13 18 18 C 1.52995 * 109.47311 * 301.26359 * 15 14 13 19 19 C 1.53004 * 109.47200 * 175.62325 * 18 15 14 20 20 C 1.50696 * 109.47219 * 185.34940 * 19 18 15 21 21 H 1.08004 * 120.00286 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00198 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99947 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00244 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46922 * 60.00593 * 24 22 20 26 26 H 1.48496 * 109.47241 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47466 * 300.00469 * 24 22 20 28 28 C 1.48717 * 104.28940 * 320.57313 * 14 13 12 29 29 H 1.09002 * 109.47617 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47214 * 300.00295 * 1 2 3 31 31 H 1.09005 * 109.46710 * 60.00053 * 1 2 3 32 32 H 1.08001 * 120.00280 * 0.03304 * 4 3 2 33 33 H 1.08001 * 119.92630 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.92305 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.00809 * 179.97438 * 7 6 5 36 36 H 1.09008 * 110.32441 * 237.79648 * 12 10 9 37 37 H 1.08998 * 110.32503 * 359.89766 * 12 10 9 38 38 H 1.08998 * 110.40991 * 142.63378 * 13 12 10 39 39 H 1.08994 * 110.41005 * 265.07272 * 13 12 10 40 40 H 1.09001 * 109.47373 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47380 * 300.00064 * 17 15 14 42 42 H 1.08993 * 109.47380 * 60.00347 * 17 15 14 43 43 H 1.08996 * 109.47229 * 295.62784 * 18 15 14 44 44 H 1.09002 * 109.47180 * 55.62701 * 18 15 14 45 45 H 1.08994 * 109.47404 * 305.35365 * 19 18 15 46 46 H 1.08999 * 109.46644 * 65.35141 * 19 18 15 47 47 H 0.96993 * 119.99748 * 180.02562 * 23 22 20 48 48 H 1.09004 * 110.39013 * 280.64161 * 28 14 13 49 49 H 1.08995 * 110.51288 * 158.14960 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3030 3.6797 -0.0005 7 6 4.0604 2.5233 0.0000 8 6 3.4359 1.2862 0.0059 9 8 4.1794 0.1476 0.0121 10 6 5.5991 0.2994 -0.0469 11 1 5.8642 1.1183 -0.7157 12 6 6.1698 0.5535 1.3635 13 6 7.1275 -0.6283 1.6276 14 7 7.5137 -1.1065 0.2752 15 6 8.0036 -2.4905 0.3263 16 1 7.2118 -3.1428 0.6945 17 6 8.4203 -2.9361 -1.0768 18 6 9.2085 -2.5707 1.2657 19 6 9.6511 -4.0287 1.4042 20 6 10.7519 -4.1244 2.4290 21 1 11.1007 -3.2343 2.9316 22 6 11.3138 -5.3481 2.7250 23 7 10.8895 -6.4320 2.1126 24 14 12.6787 -5.4666 3.9947 25 1 12.1806 -4.9745 5.3043 26 1 13.1082 -6.8817 4.1293 27 1 13.8320 -4.6379 3.5607 28 6 6.2598 -1.0136 -0.5190 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 0.2146 2.3197 -0.0004 33 1 1.3343 4.5115 -0.0011 34 1 3.7908 4.6433 -0.0014 35 1 5.1386 2.5838 0.0000 36 1 6.7165 1.4962 1.3866 37 1 5.3669 0.5642 2.1005 38 1 8.0063 -0.2901 2.1766 39 1 6.6149 -1.4173 2.1778 40 1 8.7834 -3.9631 -1.0391 41 1 7.5619 -2.8790 -1.7461 42 1 9.2121 -2.2838 -1.4450 43 1 10.0279 -1.9795 0.8569 44 1 8.9322 -2.1803 2.2451 45 1 8.8045 -4.6368 1.7226 46 1 10.0170 -4.3902 0.4432 47 1 11.2845 -7.2929 2.3212 48 1 5.6113 -1.8635 -0.3058 49 1 6.4851 -0.9642 -1.5843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:06 Heat of formation + Delta-G solvation = -50.391352 kcal Electronic energy + Delta-G solvation = -26652.624410 eV Core-core repulsion = 22966.208079 eV Total energy + Delta-G solvation = -3686.416332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88752 -39.50119 -38.06896 -36.95746 -34.58935 -32.62050 -30.64038 -30.43044 -29.98737 -28.48893 -27.89321 -27.46702 -25.08095 -23.27498 -22.65600 -22.08038 -21.15550 -20.37686 -19.34234 -18.76236 -17.50103 -16.79203 -16.47431 -16.18552 -15.91298 -15.38393 -15.04105 -14.78089 -14.58510 -14.31092 -14.15097 -14.10123 -13.73599 -13.09951 -12.94851 -12.72446 -12.46911 -12.42157 -12.19321 -11.98176 -11.73276 -11.67000 -11.42868 -11.39779 -11.31472 -11.02960 -10.97186 -10.83916 -10.68499 -10.61654 -10.51578 -10.17147 -9.61017 -9.28476 -9.02205 -8.99953 -8.31169 -8.25359 -8.04632 -5.96747 -3.98631 1.00306 1.17926 2.94799 3.01285 3.35381 3.39549 3.42200 3.46125 4.24575 4.42755 4.49111 4.52296 4.58304 4.67113 4.74048 4.81380 4.85365 4.89220 5.08838 5.13831 5.19550 5.27424 5.35145 5.38811 5.47446 5.54256 5.59385 5.72473 5.73441 5.89193 5.92364 5.97738 5.99913 6.00278 6.09411 6.21329 6.30832 6.39786 6.42377 6.64122 6.73858 6.74733 6.86974 7.03259 7.20762 7.38002 7.43060 7.71714 7.87565 8.03726 8.47119 9.08253 9.64967 11.14570 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.002184 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.747531 B =12818.264062 C =13116.658105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.123 4.123 6 C -0.116 4.116 7 C -0.173 4.173 8 C 0.109 3.891 9 O -0.297 6.297 10 C 0.080 3.920 11 H 0.082 0.918 12 C -0.147 4.147 13 C 0.036 3.964 14 N -0.503 5.503 15 C 0.071 3.929 16 H 0.040 0.960 17 C -0.140 4.140 18 C -0.102 4.102 19 C 0.023 3.977 20 C -0.519 4.519 21 H 0.054 0.946 22 C 0.056 3.944 23 N -0.896 5.896 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.040 3.960 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.133 0.867 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.012 0.988 46 H 0.020 0.980 47 H 0.260 0.740 48 H 0.058 0.942 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 19.804 -6.383 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.049 3.951 4 C -0.194 4.194 5 C -0.141 4.141 6 C -0.135 4.135 7 C -0.192 4.192 8 C 0.063 3.937 9 O -0.210 6.210 10 C 0.023 3.977 11 H 0.100 0.900 12 C -0.185 4.185 13 C -0.092 4.092 14 N -0.228 5.228 15 C -0.037 4.037 16 H 0.058 0.942 17 C -0.197 4.197 18 C -0.140 4.140 19 C -0.014 4.014 20 C -0.557 4.557 21 H 0.072 0.928 22 C -0.145 4.145 23 N -0.536 5.536 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.088 4.088 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.031 0.969 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.417 19.503 -6.621 29.002 hybrid contribution -0.031 -0.360 1.098 1.156 sum -20.448 19.143 -5.523 28.550 Atomic orbital electron populations 1.23058 0.78698 1.04043 1.01018 1.86210 1.20885 1.25863 1.88951 1.18311 0.89254 0.85287 1.02214 1.21060 0.99861 0.91619 1.06825 1.20833 0.94608 0.96911 1.01753 1.20877 0.93714 0.97900 1.00971 1.21195 1.00774 0.91075 1.06160 1.18286 0.88220 0.86476 1.00750 1.86247 1.18633 1.28153 1.87999 1.23257 0.77476 0.99614 0.97368 0.89975 1.22923 0.99447 0.99767 0.96402 1.23032 0.98286 0.95928 0.91925 1.65569 1.24591 1.23055 1.09608 1.22021 0.97997 0.86133 0.97510 0.94164 1.21826 1.00633 1.02284 0.94992 1.21712 0.94726 1.01098 0.96418 1.19118 0.95939 0.89334 0.97052 1.21217 1.18999 0.93161 1.22324 0.92821 1.25022 0.97103 0.95932 0.96445 1.69955 1.42622 0.98521 1.42453 0.86669 0.82485 0.76885 0.82020 1.20310 1.21336 1.20241 1.23068 0.90943 0.95287 0.99488 0.88174 0.92806 0.92823 0.84964 0.85733 0.85611 0.84470 0.90301 0.90368 0.89399 0.93307 0.91079 0.93973 0.92206 0.92645 0.93321 0.96925 0.96177 0.93007 0.92337 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.63 10.28 -34.22 -0.35 -3.98 16 3 C 0.09 1.10 6.70 -39.12 -0.26 0.83 16 4 C -0.17 -1.55 9.04 -39.46 -0.36 -1.91 16 5 C -0.12 -0.98 10.04 -39.57 -0.40 -1.38 16 6 C -0.12 -0.98 10.04 -39.58 -0.40 -1.38 16 7 C -0.17 -1.73 8.77 -39.46 -0.35 -2.08 16 8 C 0.11 1.33 6.62 -39.12 -0.26 1.07 16 9 O -0.30 -4.06 9.54 -34.21 -0.33 -4.38 16 10 C 0.08 0.96 2.93 -25.35 -0.07 0.89 16 11 H 0.08 0.87 6.43 -51.93 -0.33 0.54 16 12 C -0.15 -1.73 6.04 -25.35 -0.15 -1.89 16 13 C 0.04 0.52 5.29 -2.18 -0.01 0.51 16 14 N -0.50 -7.70 5.20 -221.89 -1.15 -8.86 16 15 C 0.07 1.26 1.93 -67.72 -0.13 1.13 16 16 H 0.04 0.76 7.97 -51.93 -0.41 0.35 16 17 C -0.14 -2.34 8.92 37.16 0.33 -2.01 16 18 C -0.10 -2.13 4.56 -26.73 -0.12 -2.25 16 19 C 0.02 0.60 4.58 -27.88 -0.13 0.47 16 20 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 21 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 24 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 C 0.04 0.55 5.33 -2.09 -0.01 0.53 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.13 0.85 6.30 -52.49 -0.33 0.51 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.21 5.72 -52.49 -0.30 0.91 16 36 H 0.08 0.80 8.10 -51.92 -0.42 0.38 16 37 H 0.08 0.93 7.98 -51.93 -0.41 0.52 16 38 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 39 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 40 H 0.07 1.30 6.67 -51.93 -0.35 0.95 16 41 H 0.04 0.61 7.11 -51.93 -0.37 0.24 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.05 1.01 6.69 -51.93 -0.35 0.66 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.54 6.82 -51.93 -0.35 0.19 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 49 H 0.09 1.13 7.72 -51.93 -0.40 0.72 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -32.25 385.26 -10.17 -42.41 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.12 Total: -1.55 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.74 Total: -19.91 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.42 Total: -35.28 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.68 Total: -8.37 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.25 -10.17 -42.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.981 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds