Wall clock time and date at job start Tue Mar 31 2020 12:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 113.99985 * 2 1 4 4 C 1.53002 * 109.46914 * 59.99998 * 3 2 1 5 5 C 1.52991 * 109.47202 * 300.00001 * 3 2 1 6 6 C 1.53004 * 109.47228 * 179.97438 * 3 2 1 7 7 C 1.52995 * 109.47316 * 295.90289 * 6 3 2 8 8 H 1.08999 * 109.47252 * 306.41156 * 7 6 3 9 9 C 1.53010 * 109.46886 * 186.41302 * 7 6 3 10 10 N 1.46495 * 109.47392 * 66.41507 * 7 6 3 11 11 C 1.34783 * 120.00102 * 205.00135 * 10 7 6 12 12 O 1.21284 * 119.99466 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99992 * 179.97438 * 11 10 7 14 14 H 1.08998 * 109.47238 * 49.06679 * 13 11 10 15 15 C 1.50703 * 109.46874 * 289.06255 * 13 11 10 16 16 H 1.07994 * 120.00287 * 300.16272 * 15 13 11 17 17 C 1.37874 * 119.99470 * 120.16444 * 15 13 11 18 18 N 1.31521 * 119.99882 * 186.84666 * 17 15 13 19 19 Si 1.86804 * 120.00398 * 7.11508 * 17 15 13 20 20 H 1.48497 * 109.47401 * 275.09486 * 19 17 15 21 21 H 1.48503 * 109.46633 * 35.09645 * 19 17 15 22 22 H 1.48501 * 109.47182 * 155.09194 * 19 17 15 23 23 C 1.50697 * 109.46633 * 169.06506 * 13 11 10 24 24 C 1.38234 * 120.00106 * 67.68444 * 23 13 11 25 25 C 1.38232 * 120.00121 * 179.78317 * 24 23 13 26 26 C 1.38234 * 119.99838 * 0.43958 * 25 24 23 27 27 C 1.38234 * 120.00121 * 359.81231 * 26 25 24 28 28 C 1.38231 * 119.99686 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47094 * 60.00295 * 1 2 3 30 30 H 1.09010 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47414 * 299.99764 * 1 2 3 32 32 H 1.08995 * 109.47200 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47366 * 300.00052 * 4 3 2 34 34 H 1.09002 * 109.47327 * 60.00072 * 4 3 2 35 35 H 1.08999 * 109.47609 * 306.30229 * 5 3 2 36 36 H 1.08998 * 109.47058 * 66.30451 * 5 3 2 37 37 H 1.09001 * 109.47021 * 186.30059 * 5 3 2 38 38 H 1.09001 * 109.46999 * 175.89697 * 6 3 2 39 39 H 1.09005 * 109.46611 * 55.89990 * 6 3 2 40 40 H 1.08999 * 109.47056 * 299.99974 * 9 7 6 41 41 H 1.08994 * 109.46618 * 60.00233 * 9 7 6 42 42 H 1.08996 * 109.46713 * 179.97438 * 9 7 6 43 43 H 0.97001 * 120.00115 * 24.99325 * 10 7 6 44 44 H 0.96998 * 119.99687 * 180.27251 * 18 17 15 45 45 H 1.08003 * 120.00011 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00298 * 180.27019 * 25 24 23 47 47 H 1.08009 * 120.00079 * 179.83105 * 26 25 24 48 48 H 1.08005 * 120.00006 * 180.02562 * 27 26 25 49 49 H 1.08006 * 119.99846 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.5586 2.0647 1.2493 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9936 0.5165 1.2985 8 1 3.5806 1.0563 2.1506 9 6 5.5217 0.5396 1.3721 10 7 3.5244 -0.8710 1.3255 11 6 3.3482 -1.5000 2.5044 12 8 3.5785 -0.9174 3.5429 13 6 2.8649 -2.9272 2.5322 14 1 3.4603 -3.5259 1.8429 15 6 1.4168 -2.9754 2.1177 16 1 0.6742 -2.4351 2.6860 17 6 1.0401 -3.7092 1.0130 18 7 -0.1970 -3.6446 0.5712 19 14 2.2848 -4.8012 0.1481 20 1 3.0591 -3.9927 -0.8275 21 1 3.2104 -5.3869 1.1509 22 1 1.5742 -5.8921 -0.5662 23 6 3.0067 -3.4784 3.9276 24 6 2.2193 -2.9825 4.9499 25 6 2.3462 -3.4912 6.2289 26 6 3.2668 -4.4894 6.4876 27 6 4.0579 -4.9816 5.4664 28 6 3.9279 -4.4760 4.1865 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.0023 3.0602 1.2496 33 1 0.4721 2.1507 1.2493 34 1 1.8803 1.5238 2.1393 35 1 1.7808 1.4706 -2.1356 36 1 0.4858 2.2487 -1.1945 37 1 2.0880 3.0158 -1.3073 38 1 3.9785 2.1778 -0.0729 39 1 3.8524 0.5814 -0.8501 40 1 5.9347 -0.0002 0.5200 41 1 5.8707 1.5720 1.3520 42 1 5.8481 0.0640 2.2969 43 1 3.3404 -1.3371 0.4949 44 1 -0.4630 -4.1639 -0.2036 45 1 1.5028 -2.1999 4.7486 46 1 1.7279 -3.1069 7.0268 47 1 3.3679 -4.8850 7.4875 48 1 4.7769 -5.7618 5.6684 49 1 4.5462 -4.8602 3.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265513144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:18 Heat of formation + Delta-G solvation = -68.364243 kcal Electronic energy + Delta-G solvation = -29056.256893 eV Core-core repulsion = 25369.061198 eV Total energy + Delta-G solvation = -3687.195695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.51538 -38.67826 -37.64486 -35.16919 -33.49248 -32.47027 -31.43911 -30.12676 -30.07419 -27.52507 -27.28392 -27.18642 -25.42540 -23.57653 -21.83435 -21.69419 -20.38504 -19.37544 -19.13091 -17.04062 -16.40597 -16.08867 -15.65226 -15.46664 -15.20375 -14.58803 -14.52391 -14.28280 -13.76732 -13.47747 -13.21887 -13.02747 -12.86936 -12.81586 -12.61402 -12.53382 -12.20547 -12.05991 -11.95355 -11.80623 -11.75659 -11.61834 -11.51682 -11.26421 -11.03523 -11.00373 -10.76332 -10.41638 -10.33597 -10.04330 -9.92786 -9.91407 -9.37593 -8.97592 -8.88087 -8.51506 -8.10761 -8.06198 -7.73794 -6.21235 -4.19157 2.21123 2.27519 3.18546 3.28622 3.30848 3.83637 4.12305 4.29526 4.37609 4.72056 4.81763 5.01694 5.15530 5.21766 5.48483 5.53647 5.59978 5.63383 5.64893 5.68508 5.74520 5.76844 5.84522 5.88943 5.92579 5.96812 6.01727 6.05526 6.10632 6.18224 6.21726 6.29388 6.31757 6.39302 6.47559 6.50268 6.52235 6.67480 6.80615 6.81625 6.92543 7.22633 7.31263 7.37659 7.48514 7.67572 7.85819 7.88633 8.33819 8.60849 8.82485 9.38520 9.40618 10.90459 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.005660 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.724679 B = 4945.385327 C = 5904.848420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.349 6.349 3 C 0.107 3.893 4 C -0.179 4.179 5 C -0.175 4.175 6 C -0.112 4.112 7 C 0.143 3.857 8 H 0.086 0.914 9 C -0.163 4.163 10 N -0.708 5.708 11 C 0.533 3.467 12 O -0.573 6.573 13 C 0.028 3.972 14 H 0.059 0.941 15 C -0.489 4.489 16 H 0.081 0.919 17 C 0.089 3.911 18 N -0.882 5.882 19 Si 0.861 3.139 20 H -0.272 1.272 21 H -0.265 1.265 22 H -0.287 1.287 23 C -0.022 4.022 24 C -0.071 4.071 25 C -0.131 4.131 26 C -0.144 4.144 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.022 0.978 30 H 0.110 0.890 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.403 0.597 44 H 0.265 0.735 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 7.613 -1.761 9.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.267 6.267 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.233 4.233 6 C -0.150 4.150 7 C 0.037 3.963 8 H 0.104 0.896 9 C -0.221 4.221 10 N -0.359 5.359 11 C 0.322 3.678 12 O -0.453 6.453 13 C 0.006 3.994 14 H 0.077 0.923 15 C -0.527 4.527 16 H 0.099 0.901 17 C -0.115 4.115 18 N -0.519 5.519 19 Si 0.689 3.311 20 H -0.197 1.197 21 H -0.189 1.189 22 H -0.213 1.213 23 C -0.023 4.023 24 C -0.090 4.090 25 C -0.149 4.149 26 C -0.162 4.162 27 C -0.148 4.148 28 C -0.152 4.152 29 H 0.041 0.959 30 H 0.128 0.872 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.238 0.762 44 H 0.075 0.925 45 H 0.135 0.865 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.002 7.798 -1.188 9.912 hybrid contribution 0.127 -0.594 -1.051 1.214 sum 6.129 7.204 -2.239 9.720 Atomic orbital electron populations 1.22811 0.81177 1.04641 0.97653 1.88135 1.19576 1.24392 1.94589 1.21391 0.93346 0.85105 0.93450 1.22470 1.01580 1.00120 0.99453 1.22410 1.01642 1.00423 0.98790 1.21902 0.93413 1.01190 0.98479 1.20811 0.93092 0.84571 0.97820 0.89605 1.22207 0.96460 1.01200 1.02265 1.45791 1.68153 1.12462 1.09454 1.21362 0.73750 0.90167 0.82556 1.90551 1.52776 1.68988 1.32952 1.18403 0.99516 0.89724 0.91733 0.92294 1.20452 0.88801 1.31398 1.12030 0.90059 1.24911 0.95040 0.95677 0.95843 1.69821 1.17077 1.40534 1.24446 0.87085 0.82267 0.81588 0.80204 1.19723 1.18946 1.21282 1.19951 0.92603 0.94083 0.95692 1.20867 0.97996 0.98375 0.91723 1.21028 0.99121 0.97847 0.96899 1.20850 0.98204 0.98943 0.98246 1.20871 1.00130 1.00461 0.93376 1.20989 0.99245 0.98662 0.96353 0.95929 0.87183 0.94966 0.92447 0.92469 0.90869 0.91984 0.92419 0.92220 0.89999 0.90880 0.92906 0.92552 0.92084 0.76236 0.92450 0.86452 0.87254 0.87454 0.87374 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.21 101.05 1.03 1.63 16 2 O -0.35 -6.31 8.22 -35.23 -0.29 -6.60 16 3 C 0.11 1.53 0.82 -90.62 -0.07 1.46 16 4 C -0.18 -2.53 7.80 37.16 0.29 -2.24 16 5 C -0.18 -2.10 8.06 37.15 0.30 -1.80 16 6 C -0.11 -1.47 4.13 -26.73 -0.11 -1.58 16 7 C 0.14 2.24 2.29 -67.93 -0.16 2.09 16 8 H 0.09 1.50 5.43 -51.93 -0.28 1.21 16 9 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 10 N -0.71 -13.45 3.84 -53.80 -0.21 -13.66 16 11 C 0.53 11.79 6.95 -10.98 -0.08 11.71 16 12 O -0.57 -13.75 14.98 5.55 0.08 -13.67 16 13 C 0.03 0.64 2.25 -94.07 -0.21 0.43 16 14 H 0.06 1.34 4.53 -51.93 -0.24 1.10 16 15 C -0.49 -12.46 8.28 -34.44 -0.29 -12.75 16 16 H 0.08 2.31 7.56 -52.49 -0.40 1.92 16 17 C 0.09 2.28 5.47 -17.82 -0.10 2.19 16 18 N -0.88 -23.68 13.68 55.43 0.76 -22.92 16 19 Si 0.86 19.63 26.95 -169.99 -4.58 15.05 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.26 -5.94 6.79 56.52 0.38 -5.55 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.02 -0.51 4.40 -104.63 -0.46 -0.97 16 24 C -0.07 -1.57 8.16 -39.59 -0.32 -1.89 16 25 C -0.13 -2.49 10.05 -39.59 -0.40 -2.89 16 26 C -0.14 -2.54 10.05 -39.58 -0.40 -2.93 16 27 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 28 C -0.13 -2.75 9.67 -39.59 -0.38 -3.13 16 29 H 0.02 0.34 6.56 -51.93 -0.34 0.00 16 30 H 0.11 2.33 7.86 -51.92 -0.41 1.92 16 31 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 34 H 0.07 1.23 6.21 -51.93 -0.32 0.91 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.69 6.89 -51.93 -0.36 0.33 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.40 7.80 7.81 -40.82 -0.32 7.48 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.12 2.70 7.48 -52.48 -0.39 2.31 16 46 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 47 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 48 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 49 H 0.11 2.06 7.96 -52.48 -0.42 1.64 16 LS Contribution 385.68 15.07 5.81 5.81 Total: -1.00 -28.45 385.68 -7.77 -36.22 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -7.95 Total: 15.10 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.40 Total: -15.33 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.55 Total: -36.58 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.21 Total: -20.27 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.58 Total: 15.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.45 -7.77 -36.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265513144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.141 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds