Wall clock time and date at job start Tue Mar 31 2020 12:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42898 * 113.99985 * 2 1 4 4 C 1.53002 * 109.46914 * 59.99998 * 3 2 1 5 5 C 1.52991 * 109.47202 * 300.00001 * 3 2 1 6 6 C 1.53004 * 109.47228 * 179.97438 * 3 2 1 7 7 C 1.52995 * 109.47316 * 295.90289 * 6 3 2 8 8 H 1.08999 * 109.47252 * 306.41156 * 7 6 3 9 9 C 1.53010 * 109.46886 * 186.41302 * 7 6 3 10 10 N 1.46495 * 109.47392 * 66.41507 * 7 6 3 11 11 C 1.34783 * 120.00102 * 205.00135 * 10 7 6 12 12 O 1.21284 * 119.99466 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99992 * 179.97438 * 11 10 7 14 14 H 1.08998 * 109.47238 * 49.06679 * 13 11 10 15 15 C 1.50703 * 109.46874 * 289.06255 * 13 11 10 16 16 H 1.07994 * 120.00287 * 300.16272 * 15 13 11 17 17 C 1.37874 * 119.99470 * 120.16444 * 15 13 11 18 18 N 1.31521 * 119.99882 * 186.84666 * 17 15 13 19 19 Si 1.86804 * 120.00398 * 7.11508 * 17 15 13 20 20 H 1.48497 * 109.47401 * 275.09486 * 19 17 15 21 21 H 1.48503 * 109.46633 * 35.09645 * 19 17 15 22 22 H 1.48501 * 109.47182 * 155.09194 * 19 17 15 23 23 C 1.50697 * 109.46633 * 169.06506 * 13 11 10 24 24 C 1.38234 * 120.00106 * 67.68444 * 23 13 11 25 25 C 1.38232 * 120.00121 * 179.78317 * 24 23 13 26 26 C 1.38234 * 119.99838 * 0.43958 * 25 24 23 27 27 C 1.38234 * 120.00121 * 359.81231 * 26 25 24 28 28 C 1.38231 * 119.99686 * 359.97438 * 27 26 25 29 29 H 1.08997 * 109.47094 * 60.00295 * 1 2 3 30 30 H 1.09010 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47414 * 299.99764 * 1 2 3 32 32 H 1.08995 * 109.47200 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47366 * 300.00052 * 4 3 2 34 34 H 1.09002 * 109.47327 * 60.00072 * 4 3 2 35 35 H 1.08999 * 109.47609 * 306.30229 * 5 3 2 36 36 H 1.08998 * 109.47058 * 66.30451 * 5 3 2 37 37 H 1.09001 * 109.47021 * 186.30059 * 5 3 2 38 38 H 1.09001 * 109.46999 * 175.89697 * 6 3 2 39 39 H 1.09005 * 109.46611 * 55.89990 * 6 3 2 40 40 H 1.08999 * 109.47056 * 299.99974 * 9 7 6 41 41 H 1.08994 * 109.46618 * 60.00233 * 9 7 6 42 42 H 1.08996 * 109.46713 * 179.97438 * 9 7 6 43 43 H 0.97001 * 120.00115 * 24.99325 * 10 7 6 44 44 H 0.96998 * 119.99687 * 180.27251 * 18 17 15 45 45 H 1.08003 * 120.00011 * 359.97438 * 24 23 13 46 46 H 1.08004 * 120.00298 * 180.27019 * 25 24 23 47 47 H 1.08009 * 120.00079 * 179.83105 * 26 25 24 48 48 H 1.08005 * 120.00006 * 180.02562 * 27 26 25 49 49 H 1.08006 * 119.99846 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.5586 2.0647 1.2493 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1847 0.0006 7 6 3.9936 0.5165 1.2985 8 1 3.5806 1.0563 2.1506 9 6 5.5217 0.5396 1.3721 10 7 3.5244 -0.8710 1.3255 11 6 3.3482 -1.5000 2.5044 12 8 3.5785 -0.9174 3.5429 13 6 2.8649 -2.9272 2.5322 14 1 3.4603 -3.5259 1.8429 15 6 1.4168 -2.9754 2.1177 16 1 0.6742 -2.4351 2.6860 17 6 1.0401 -3.7092 1.0130 18 7 -0.1970 -3.6446 0.5712 19 14 2.2848 -4.8012 0.1481 20 1 3.0591 -3.9927 -0.8275 21 1 3.2104 -5.3869 1.1509 22 1 1.5742 -5.8921 -0.5662 23 6 3.0067 -3.4784 3.9276 24 6 2.2193 -2.9825 4.9499 25 6 2.3462 -3.4912 6.2289 26 6 3.2668 -4.4894 6.4876 27 6 4.0579 -4.9816 5.4664 28 6 3.9279 -4.4760 4.1865 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.0023 3.0602 1.2496 33 1 0.4721 2.1507 1.2493 34 1 1.8803 1.5238 2.1393 35 1 1.7808 1.4706 -2.1356 36 1 0.4858 2.2487 -1.1945 37 1 2.0880 3.0158 -1.3073 38 1 3.9785 2.1778 -0.0729 39 1 3.8524 0.5814 -0.8501 40 1 5.9347 -0.0002 0.5200 41 1 5.8707 1.5720 1.3520 42 1 5.8481 0.0640 2.2969 43 1 3.3404 -1.3371 0.4949 44 1 -0.4630 -4.1639 -0.2036 45 1 1.5028 -2.1999 4.7486 46 1 1.7279 -3.1069 7.0268 47 1 3.3679 -4.8850 7.4875 48 1 4.7769 -5.7618 5.6684 49 1 4.5462 -4.8602 3.3887 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265513144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:18 Heat of formation + Delta-G solvation = -84.526538 kcal Electronic energy + Delta-G solvation = -29056.957742 eV Core-core repulsion = 25369.061198 eV Total energy + Delta-G solvation = -3687.896544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05097 -40.07794 -39.18081 -36.60119 -35.37674 -33.80697 -33.26394 -31.61052 -31.49008 -29.22164 -28.45665 -28.30594 -26.73357 -25.44593 -23.36870 -23.14801 -21.79406 -20.80282 -20.58862 -19.00951 -17.94769 -17.63704 -17.04001 -16.90199 -16.48852 -16.29516 -15.91839 -15.83106 -15.33029 -15.08051 -14.74829 -14.47144 -14.44396 -14.25731 -14.10678 -13.83533 -13.67392 -13.47365 -13.28966 -13.17101 -12.86721 -12.82387 -12.78762 -12.71934 -12.68820 -12.41761 -12.07633 -12.00968 -11.83648 -11.65306 -11.55668 -11.29696 -11.15766 -10.76535 -10.38183 -10.28403 -9.65562 -9.61273 -9.32772 -8.21963 -6.24233 0.66505 0.73361 1.35963 1.41209 1.47387 2.08290 2.36979 2.65883 3.06313 3.14455 3.23293 3.69065 3.90002 4.10257 4.11622 4.24692 4.29527 4.35255 4.37163 4.42623 4.45396 4.49970 4.57243 4.59818 4.62302 4.70169 4.75638 4.81801 4.86239 4.88632 4.89935 4.91072 4.97465 5.08373 5.12831 5.24995 5.26249 5.31206 5.35056 5.38652 5.46916 5.50057 5.71728 5.76074 5.95563 6.00997 6.28789 6.37230 6.59376 6.71517 6.94415 7.36172 7.69367 8.92258 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012178 B = 0.005660 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.724679 B = 4945.385327 C = 5904.848420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.097 3.903 4 C -0.173 4.173 5 C -0.167 4.167 6 C -0.104 4.104 7 C 0.136 3.864 8 H 0.065 0.935 9 C -0.154 4.154 10 N -0.699 5.699 11 C 0.529 3.471 12 O -0.598 6.598 13 C 0.030 3.970 14 H 0.063 0.937 15 C -0.483 4.483 16 H 0.031 0.969 17 C 0.049 3.951 18 N -0.917 5.917 19 Si 0.913 3.087 20 H -0.252 1.252 21 H -0.255 1.255 22 H -0.289 1.289 23 C -0.054 4.054 24 C -0.101 4.101 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.150 4.150 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.401 0.599 44 H 0.266 0.734 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.150 0.850 48 H 0.149 0.851 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.637 7.794 -2.281 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.295 6.295 3 C 0.058 3.942 4 C -0.230 4.230 5 C -0.225 4.225 6 C -0.142 4.142 7 C 0.031 3.969 8 H 0.083 0.917 9 C -0.213 4.213 10 N -0.348 5.348 11 C 0.318 3.682 12 O -0.481 6.481 13 C 0.008 3.992 14 H 0.081 0.919 15 C -0.521 4.521 16 H 0.050 0.950 17 C -0.152 4.152 18 N -0.554 5.554 19 Si 0.737 3.263 20 H -0.176 1.176 21 H -0.180 1.180 22 H -0.216 1.216 23 C -0.055 4.055 24 C -0.119 4.119 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.168 4.168 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.052 0.948 43 H 0.236 0.764 44 H 0.075 0.925 45 H 0.103 0.897 46 H 0.150 0.850 47 H 0.168 0.832 48 H 0.166 0.834 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.778 8.007 -1.724 12.006 hybrid contribution -0.762 -0.581 -0.772 1.230 sum 8.016 7.426 -2.496 11.209 Atomic orbital electron populations 1.22548 0.81743 1.02312 0.98589 1.88079 1.19261 1.27339 1.94827 1.21718 0.94106 0.83772 0.94647 1.22417 1.01388 1.01224 0.98021 1.22329 1.01865 1.01276 0.96997 1.21953 0.92400 1.03058 0.96764 1.21069 0.94492 0.82490 0.98820 0.91703 1.22128 0.94554 1.03190 1.01400 1.45804 1.66998 1.13817 1.08203 1.21192 0.73901 0.89985 0.83142 1.90518 1.54201 1.69369 1.33962 1.18337 0.97593 0.90622 0.92642 0.91865 1.20241 0.89413 1.30843 1.11575 0.95033 1.25509 0.96627 0.96708 0.96337 1.69955 1.18907 1.41504 1.25076 0.86243 0.80427 0.79956 0.79633 1.17643 1.17984 1.21563 1.20032 0.94400 0.95691 0.95383 1.20785 0.98526 0.98967 0.93647 1.21336 0.99782 0.98094 0.96027 1.21334 0.96465 0.97429 1.00179 1.21343 1.00178 1.00441 0.92168 1.21233 0.99065 0.98296 0.98208 0.93197 0.91190 0.95683 0.89400 0.93030 0.94427 0.91962 0.92636 0.89325 0.86094 0.90111 0.91558 0.89370 0.94771 0.76425 0.92490 0.89711 0.84980 0.83204 0.83370 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 10.21 113.37 1.16 2.84 16 2 O -0.38 -13.99 8.22 -148.98 -1.22 -15.21 16 3 C 0.10 2.67 0.82 -10.79 -0.01 2.66 16 4 C -0.17 -4.89 7.80 71.98 0.56 -4.33 16 5 C -0.17 -3.56 8.06 71.98 0.58 -2.98 16 6 C -0.10 -2.48 4.13 30.59 0.13 -2.35 16 7 C 0.14 4.20 2.29 44.99 0.10 4.30 16 8 H 0.06 2.31 5.43 -2.39 -0.01 2.30 16 9 C -0.15 -4.02 9.48 71.99 0.68 -3.34 16 10 N -0.70 -27.20 3.84 -442.52 -1.70 -28.90 16 11 C 0.53 24.55 6.95 87.66 0.61 25.16 16 12 O -0.60 -30.33 14.98 -3.04 -0.05 -30.38 16 13 C 0.03 1.43 2.25 -13.03 -0.03 1.40 16 14 H 0.06 2.91 4.53 -2.39 -0.01 2.90 16 15 C -0.48 -26.29 8.28 25.60 0.21 -26.08 16 16 H 0.03 1.98 7.56 -2.91 -0.02 1.96 16 17 C 0.05 2.61 5.47 84.65 0.46 3.08 16 18 N -0.92 -51.85 13.68 21.45 0.29 -51.56 16 19 Si 0.91 40.75 26.95 68.60 1.85 42.60 16 20 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.26 -10.97 6.79 99.48 0.68 -10.29 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 23 C -0.05 -2.53 4.40 -19.87 -0.09 -2.61 16 24 C -0.10 -4.67 8.16 22.27 0.18 -4.49 16 25 C -0.13 -5.07 10.05 22.27 0.22 -4.84 16 26 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 27 C -0.12 -4.09 10.05 22.27 0.22 -3.87 16 28 C -0.15 -6.00 9.67 22.27 0.22 -5.78 16 29 H 0.05 1.56 6.56 -2.39 -0.02 1.54 16 30 H 0.07 3.21 7.86 -2.38 -0.02 3.19 16 31 H 0.02 0.94 6.42 -2.39 -0.02 0.92 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.48 6.54 -2.39 -0.02 1.46 16 34 H 0.04 1.32 6.21 -2.39 -0.01 1.31 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.20 6.89 -2.39 -0.02 1.19 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.40 15.74 7.81 -92.71 -0.72 15.02 16 44 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.08 4.34 7.48 -2.91 -0.02 4.32 16 46 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 48 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 49 H 0.12 4.38 7.96 -2.91 -0.02 4.36 16 Total: -1.00 -67.89 385.68 4.79 -63.10 By element: Atomic # 1 Polarization: 45.56 SS G_CDS: 0.18 Total: 45.74 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 5.44 Total: -25.40 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -1.41 Total: -80.45 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.27 Total: -45.59 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.85 Total: 42.60 kcal Total: -67.89 4.79 -63.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265513144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.426 kcal (2) G-P(sol) polarization free energy of solvation -67.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds