Wall clock time and date at job start Tue Mar 31 2020 12:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99616 * 2 1 4 4 C 1.52998 * 109.47024 * 60.00216 * 3 2 1 5 5 C 1.53002 * 109.47240 * 299.99980 * 3 2 1 6 6 C 1.53004 * 109.46467 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47289 * 65.00138 * 6 3 2 8 8 H 1.09002 * 109.47443 * 54.99521 * 7 6 3 9 9 C 1.53004 * 109.47094 * 174.99765 * 7 6 3 10 10 N 1.46505 * 109.47065 * 294.99937 * 7 6 3 11 11 C 1.34772 * 119.99970 * 155.00683 * 10 7 6 12 12 O 1.21281 * 120.00096 * 359.97438 * 11 10 7 13 13 C 1.50700 * 119.99672 * 179.97438 * 11 10 7 14 14 H 1.09004 * 109.47230 * 59.99769 * 13 11 10 15 15 C 1.50696 * 109.47260 * 299.99223 * 13 11 10 16 16 H 1.07999 * 119.99984 * 324.88506 * 15 13 11 17 17 C 1.37872 * 120.00061 * 144.88184 * 15 13 11 18 18 N 1.31518 * 120.00361 * 5.19456 * 17 15 13 19 19 Si 1.86807 * 119.99939 * 185.19376 * 17 15 13 20 20 H 1.48492 * 109.47006 * 90.00164 * 19 17 15 21 21 H 1.48503 * 109.46849 * 209.99941 * 19 17 15 22 22 H 1.48491 * 109.46962 * 329.99673 * 19 17 15 23 23 C 1.50700 * 109.46895 * 179.97438 * 13 11 10 24 24 C 1.38233 * 120.00133 * 66.01040 * 23 13 11 25 25 C 1.38236 * 120.00172 * 179.78712 * 24 23 13 26 26 C 1.38236 * 119.99709 * 0.44221 * 25 24 23 27 27 C 1.38233 * 120.00128 * 359.81041 * 26 25 24 28 28 C 1.38233 * 120.00243 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47571 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47201 * 300.00072 * 1 2 3 31 31 H 1.08998 * 109.47566 * 59.99960 * 1 2 3 32 32 H 1.09001 * 109.46530 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47326 * 299.99632 * 4 3 2 34 34 H 1.08997 * 109.47192 * 60.00160 * 4 3 2 35 35 H 1.09001 * 109.46816 * 300.00612 * 5 3 2 36 36 H 1.08998 * 109.47069 * 60.00393 * 5 3 2 37 37 H 1.08991 * 109.46800 * 180.02562 * 5 3 2 38 38 H 1.08997 * 109.47219 * 304.99721 * 6 3 2 39 39 H 1.09002 * 109.46816 * 185.00178 * 6 3 2 40 40 H 1.09000 * 109.47188 * 299.99764 * 9 7 6 41 41 H 1.08995 * 109.46877 * 60.00211 * 9 7 6 42 42 H 1.09005 * 109.46922 * 179.97438 * 9 7 6 43 43 H 0.97002 * 119.99838 * 334.99634 * 10 7 6 44 44 H 0.96997 * 120.00553 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.99994 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00507 * 180.27457 * 25 24 23 47 47 H 1.08007 * 120.00095 * 179.83766 * 26 25 24 48 48 H 1.08011 * 119.99901 * 180.02562 * 27 26 25 49 49 H 1.07992 * 120.00239 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2493 6 6 3.5354 1.1846 -0.0006 7 6 3.9951 0.5369 -1.3083 8 1 3.6038 1.1048 -2.1523 9 6 5.5242 0.5293 -1.3637 10 7 3.4973 -0.8395 -1.3729 11 6 3.3223 -1.4373 -2.5680 12 8 3.5766 -0.8358 -3.5900 13 6 2.8107 -2.8533 -2.6344 14 1 1.8276 -2.9067 -2.1668 15 6 3.7635 -3.7663 -1.9067 16 1 4.8256 -3.5725 -1.9360 17 6 3.2794 -4.8489 -1.2036 18 7 1.9988 -5.1447 -1.2511 19 14 4.4424 -5.8959 -0.1834 20 1 4.5193 -5.3500 1.1954 21 1 3.9387 -7.2921 -0.1356 22 1 5.7936 -5.8780 -0.7990 23 6 2.7051 -3.2821 -4.0753 24 6 3.8474 -3.4157 -4.8422 25 6 3.7509 -3.8133 -6.1626 26 6 2.5113 -4.0685 -6.7186 27 6 1.3686 -3.9299 -5.9532 28 6 1.4654 -3.5366 -4.6316 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.0024 3.0603 1.2494 33 1 0.4721 2.1507 1.2493 34 1 1.8804 1.5238 2.1392 35 1 1.8803 1.5238 -2.1392 36 1 0.4721 2.1508 -1.2492 37 1 2.0023 3.0603 -1.2494 38 1 3.8514 0.5682 0.8409 39 1 3.9785 2.1765 0.0890 40 1 5.8946 1.5533 -1.3156 41 1 5.9154 -0.0386 -0.5197 42 1 5.8517 0.0674 -2.2951 43 1 3.2937 -1.3205 -0.5555 44 1 1.6582 -5.9065 -0.7568 45 1 4.8156 -3.2123 -4.4089 46 1 4.6436 -3.9219 -6.7605 47 1 2.4356 -4.3767 -7.7511 48 1 0.4001 -4.1298 -6.3876 49 1 0.5727 -3.4280 -4.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265513149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:24 Heat of formation + Delta-G solvation = -73.124209 kcal Electronic energy + Delta-G solvation = -28654.054756 eV Core-core repulsion = 24966.652654 eV Total energy + Delta-G solvation = -3687.402102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56187 -38.65893 -37.55762 -35.22545 -33.51199 -32.64955 -31.00637 -30.06027 -29.84799 -27.48806 -27.42151 -27.08966 -25.72312 -23.83371 -21.70259 -21.45756 -20.38315 -19.56093 -19.09724 -16.73405 -16.37947 -15.92625 -15.69911 -15.45267 -15.38384 -14.89568 -14.40469 -14.07087 -13.91563 -13.59193 -13.39908 -13.14930 -12.84309 -12.72390 -12.41246 -12.35680 -12.22224 -12.02132 -11.98973 -11.82082 -11.66142 -11.49867 -11.45925 -11.36557 -11.07294 -10.97213 -10.91633 -10.44710 -10.30639 -10.17867 -10.13355 -9.88553 -9.33779 -9.30621 -8.65927 -8.42771 -8.01863 -7.85618 -7.49584 -6.17331 -4.22430 2.46883 2.50250 3.24579 3.32152 3.35248 3.90631 3.94482 4.31077 4.37608 4.70139 4.84865 4.94633 5.03089 5.19218 5.39398 5.41428 5.47080 5.52938 5.58703 5.63222 5.70795 5.77500 5.79061 5.81194 5.87034 5.91534 5.95736 6.00605 6.02740 6.09585 6.14595 6.27413 6.32504 6.42762 6.55510 6.59307 6.66297 6.74147 6.97848 7.08159 7.30138 7.45219 7.47375 7.52786 7.57039 7.72506 7.87891 8.06752 8.19418 8.69928 8.82577 9.41403 9.51933 10.91012 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005242 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.521138 B = 5340.481220 C = 6283.493107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.112 3.888 4 C -0.177 4.177 5 C -0.182 4.182 6 C -0.113 4.113 7 C 0.142 3.858 8 H 0.083 0.917 9 C -0.162 4.162 10 N -0.706 5.706 11 C 0.530 3.470 12 O -0.579 6.579 13 C 0.052 3.948 14 H 0.087 0.913 15 C -0.510 4.510 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.877 5.877 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.005 4.005 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.151 4.151 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.408 0.592 44 H 0.264 0.736 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.485 11.620 3.272 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.279 6.279 3 C 0.072 3.928 4 C -0.234 4.234 5 C -0.239 4.239 6 C -0.151 4.151 7 C 0.036 3.964 8 H 0.101 0.899 9 C -0.221 4.221 10 N -0.358 5.358 11 C 0.320 3.680 12 O -0.459 6.459 13 C 0.031 3.969 14 H 0.105 0.895 15 C -0.548 4.548 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.513 5.513 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.006 4.006 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.169 4.169 27 C -0.151 4.151 28 C -0.137 4.137 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.244 0.756 44 H 0.074 0.926 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.342 11.747 2.636 12.114 hybrid contribution 0.216 -0.739 0.989 1.253 sum -1.126 11.008 3.626 11.645 Atomic orbital electron populations 1.22747 0.82040 1.02867 0.99207 1.88085 1.18939 1.26078 1.94776 1.21433 0.93693 0.83981 0.93671 1.22419 1.01692 1.00656 0.98663 1.22499 1.01429 1.00606 0.99374 1.21927 0.92705 1.01577 0.98902 1.20791 0.93256 0.85213 0.97111 0.89919 1.22189 0.96272 1.00914 1.02699 1.45828 1.67230 1.13031 1.09733 1.21467 0.75268 0.89131 0.82143 1.90552 1.53398 1.67156 1.34799 1.18078 1.00521 0.87918 0.90418 0.89489 1.20675 0.92733 1.10511 1.30832 0.92132 1.24945 0.95164 0.96968 0.95973 1.69923 1.12748 1.27768 1.40861 0.86533 0.81167 0.79513 0.80514 1.20408 1.21200 1.19766 1.20070 0.91807 0.93270 0.95446 1.20810 0.98601 0.97931 0.92963 1.20938 0.96670 1.01928 0.95806 1.20766 0.93094 1.04242 0.98828 1.20882 0.97379 1.02047 0.94774 1.20971 0.97488 1.00856 0.94371 0.89474 0.94574 0.94237 0.91863 0.92332 0.91803 0.90713 0.92535 0.91957 0.90530 0.89811 0.92842 0.92654 0.91961 0.75617 0.92570 0.87242 0.87748 0.87865 0.87727 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.21 101.05 1.03 1.39 16 2 O -0.36 -5.42 8.14 -35.23 -0.29 -5.71 16 3 C 0.11 1.38 0.82 -90.62 -0.07 1.30 16 4 C -0.18 -1.76 8.25 37.16 0.31 -1.45 16 5 C -0.18 -2.21 7.77 37.16 0.29 -1.92 16 6 C -0.11 -1.38 4.15 -26.73 -0.11 -1.49 16 7 C 0.14 2.20 2.25 -67.93 -0.15 2.04 16 8 H 0.08 1.39 5.49 -51.93 -0.29 1.11 16 9 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 10 N -0.71 -13.35 3.77 -53.80 -0.20 -13.56 16 11 C 0.53 11.97 7.01 -10.99 -0.08 11.89 16 12 O -0.58 -14.19 15.08 5.56 0.08 -14.11 16 13 C 0.05 1.26 2.38 -94.08 -0.22 1.03 16 14 H 0.09 2.26 7.13 -51.93 -0.37 1.89 16 15 C -0.51 -13.03 7.47 -34.44 -0.26 -13.29 16 16 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 17 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 18 N -0.88 -23.53 12.84 55.43 0.71 -22.82 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.00 -0.12 4.30 -104.62 -0.45 -0.57 16 24 C -0.08 -1.98 8.30 -39.58 -0.33 -2.31 16 25 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 26 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 27 C -0.13 -2.66 10.05 -39.59 -0.40 -3.06 16 28 C -0.12 -2.68 9.67 -39.58 -0.38 -3.07 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.39 6.42 -51.93 -0.33 0.06 16 31 H 0.04 0.49 6.42 -51.93 -0.33 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.12 6.23 -51.93 -0.32 0.80 16 36 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.41 7.87 7.59 -40.82 -0.31 7.56 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.11 2.59 7.90 -52.49 -0.41 2.17 16 46 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 47 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 48 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 49 H 0.11 2.41 7.96 -52.49 -0.42 1.99 16 LS Contribution 390.13 15.07 5.88 5.88 Total: -1.00 -29.32 390.13 -8.29 -37.61 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -8.09 Total: 13.56 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.37 Total: -16.18 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.51 Total: -36.38 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.20 Total: -19.82 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.32 -8.29 -37.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265513149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.514 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds