Wall clock time and date at job start Tue Mar 31 2020 12:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99616 * 2 1 4 4 C 1.52998 * 109.47024 * 60.00216 * 3 2 1 5 5 C 1.53002 * 109.47240 * 299.99980 * 3 2 1 6 6 C 1.53004 * 109.46467 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47289 * 65.00138 * 6 3 2 8 8 H 1.09002 * 109.47443 * 54.99521 * 7 6 3 9 9 C 1.53004 * 109.47094 * 174.99765 * 7 6 3 10 10 N 1.46505 * 109.47065 * 294.99937 * 7 6 3 11 11 C 1.34772 * 119.99970 * 155.00683 * 10 7 6 12 12 O 1.21281 * 120.00096 * 359.97438 * 11 10 7 13 13 C 1.50700 * 119.99672 * 179.97438 * 11 10 7 14 14 H 1.09004 * 109.47230 * 59.99769 * 13 11 10 15 15 C 1.50696 * 109.47260 * 299.99223 * 13 11 10 16 16 H 1.07999 * 119.99984 * 324.88506 * 15 13 11 17 17 C 1.37872 * 120.00061 * 144.88184 * 15 13 11 18 18 N 1.31518 * 120.00361 * 5.19456 * 17 15 13 19 19 Si 1.86807 * 119.99939 * 185.19376 * 17 15 13 20 20 H 1.48492 * 109.47006 * 90.00164 * 19 17 15 21 21 H 1.48503 * 109.46849 * 209.99941 * 19 17 15 22 22 H 1.48491 * 109.46962 * 329.99673 * 19 17 15 23 23 C 1.50700 * 109.46895 * 179.97438 * 13 11 10 24 24 C 1.38233 * 120.00133 * 66.01040 * 23 13 11 25 25 C 1.38236 * 120.00172 * 179.78712 * 24 23 13 26 26 C 1.38236 * 119.99709 * 0.44221 * 25 24 23 27 27 C 1.38233 * 120.00128 * 359.81041 * 26 25 24 28 28 C 1.38233 * 120.00243 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47571 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47201 * 300.00072 * 1 2 3 31 31 H 1.08998 * 109.47566 * 59.99960 * 1 2 3 32 32 H 1.09001 * 109.46530 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47326 * 299.99632 * 4 3 2 34 34 H 1.08997 * 109.47192 * 60.00160 * 4 3 2 35 35 H 1.09001 * 109.46816 * 300.00612 * 5 3 2 36 36 H 1.08998 * 109.47069 * 60.00393 * 5 3 2 37 37 H 1.08991 * 109.46800 * 180.02562 * 5 3 2 38 38 H 1.08997 * 109.47219 * 304.99721 * 6 3 2 39 39 H 1.09002 * 109.46816 * 185.00178 * 6 3 2 40 40 H 1.09000 * 109.47188 * 299.99764 * 9 7 6 41 41 H 1.08995 * 109.46877 * 60.00211 * 9 7 6 42 42 H 1.09005 * 109.46922 * 179.97438 * 9 7 6 43 43 H 0.97002 * 119.99838 * 334.99634 * 10 7 6 44 44 H 0.96997 * 120.00553 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.99994 * 359.97438 * 24 23 13 46 46 H 1.07995 * 120.00507 * 180.27457 * 25 24 23 47 47 H 1.08007 * 120.00095 * 179.83766 * 26 25 24 48 48 H 1.08011 * 119.99901 * 180.02562 * 27 26 25 49 49 H 1.07992 * 120.00239 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2493 6 6 3.5354 1.1846 -0.0006 7 6 3.9951 0.5369 -1.3083 8 1 3.6038 1.1048 -2.1523 9 6 5.5242 0.5293 -1.3637 10 7 3.4973 -0.8395 -1.3729 11 6 3.3223 -1.4373 -2.5680 12 8 3.5766 -0.8358 -3.5900 13 6 2.8107 -2.8533 -2.6344 14 1 1.8276 -2.9067 -2.1668 15 6 3.7635 -3.7663 -1.9067 16 1 4.8256 -3.5725 -1.9360 17 6 3.2794 -4.8489 -1.2036 18 7 1.9988 -5.1447 -1.2511 19 14 4.4424 -5.8959 -0.1834 20 1 4.5193 -5.3500 1.1954 21 1 3.9387 -7.2921 -0.1356 22 1 5.7936 -5.8780 -0.7990 23 6 2.7051 -3.2821 -4.0753 24 6 3.8474 -3.4157 -4.8422 25 6 3.7509 -3.8133 -6.1626 26 6 2.5113 -4.0685 -6.7186 27 6 1.3686 -3.9299 -5.9532 28 6 1.4654 -3.5366 -4.6316 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.0024 3.0603 1.2494 33 1 0.4721 2.1507 1.2493 34 1 1.8804 1.5238 2.1392 35 1 1.8803 1.5238 -2.1392 36 1 0.4721 2.1508 -1.2492 37 1 2.0023 3.0603 -1.2494 38 1 3.8514 0.5682 0.8409 39 1 3.9785 2.1765 0.0890 40 1 5.8946 1.5533 -1.3156 41 1 5.9154 -0.0386 -0.5197 42 1 5.8517 0.0674 -2.2951 43 1 3.2937 -1.3205 -0.5555 44 1 1.6582 -5.9065 -0.7568 45 1 4.8156 -3.2123 -4.4089 46 1 4.6436 -3.9219 -6.7605 47 1 2.4356 -4.3767 -7.7511 48 1 0.4001 -4.1298 -6.3876 49 1 0.5727 -3.4280 -4.0337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265513149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:23 Heat of formation + Delta-G solvation = -88.887615 kcal Electronic energy + Delta-G solvation = -28654.738308 eV Core-core repulsion = 24966.652654 eV Total energy + Delta-G solvation = -3688.085655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99281 -40.06726 -39.14338 -36.59906 -35.44397 -33.84240 -32.84943 -31.52409 -31.45561 -28.90000 -28.49658 -28.32026 -26.79557 -25.75766 -23.26288 -23.05178 -21.80080 -20.81311 -20.63708 -18.62637 -17.84112 -17.54646 -17.07256 -16.87074 -16.56400 -16.24358 -15.95734 -15.75366 -15.55991 -15.04949 -14.66234 -14.52145 -14.27407 -14.04154 -14.03316 -13.76865 -13.47984 -13.34330 -13.27460 -13.16537 -12.86796 -12.78841 -12.78690 -12.73453 -12.71321 -12.41745 -12.16390 -12.16019 -11.92500 -11.63574 -11.57947 -11.23191 -11.18356 -10.63528 -10.37746 -10.27165 -9.59898 -9.54465 -9.22238 -8.16706 -6.27641 0.76869 0.83148 1.42526 1.43982 1.53103 2.13215 2.46468 2.69852 3.01254 3.12660 3.30937 3.68484 3.88514 4.08667 4.23113 4.30571 4.31673 4.36072 4.42375 4.45720 4.51511 4.54697 4.55480 4.68855 4.70710 4.74024 4.79296 4.86506 4.89791 4.92158 4.94219 4.98746 5.00773 5.11047 5.16530 5.17190 5.30944 5.37402 5.40366 5.46189 5.48439 5.67993 5.79121 5.84217 5.96209 6.04315 6.28420 6.42846 6.47755 6.77476 7.02099 7.38965 7.76549 8.91244 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010435 B = 0.005242 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.521138 B = 5340.481220 C = 6283.493107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.392 6.392 3 C 0.104 3.896 4 C -0.169 4.169 5 C -0.177 4.177 6 C -0.106 4.106 7 C 0.137 3.863 8 H 0.069 0.931 9 C -0.157 4.157 10 N -0.694 5.694 11 C 0.529 3.471 12 O -0.604 6.604 13 C 0.056 3.944 14 H 0.059 0.941 15 C -0.513 4.513 16 H 0.049 0.951 17 C 0.033 3.967 18 N -0.904 5.904 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.034 4.034 24 C -0.111 4.111 25 C -0.135 4.135 26 C -0.145 4.145 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.405 0.595 44 H 0.265 0.735 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 12.629 3.445 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C 0.065 3.935 4 C -0.226 4.226 5 C -0.234 4.234 6 C -0.144 4.144 7 C 0.032 3.968 8 H 0.087 0.913 9 C -0.215 4.215 10 N -0.344 5.344 11 C 0.318 3.682 12 O -0.487 6.487 13 C 0.034 3.966 14 H 0.077 0.923 15 C -0.550 4.550 16 H 0.067 0.933 17 C -0.168 4.168 18 N -0.541 5.541 19 Si 0.778 3.222 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.035 4.035 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.163 4.163 27 C -0.147 4.147 28 C -0.162 4.162 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.241 0.759 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.153 0.847 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.897 12.783 2.838 13.125 hybrid contribution 0.058 -1.005 0.858 1.323 sum -0.839 11.778 3.697 12.373 Atomic orbital electron populations 1.22760 0.81444 1.02312 1.00353 1.88038 1.19882 1.28208 1.95033 1.21651 0.93612 0.83244 0.94971 1.22341 1.02126 1.01286 0.96882 1.22451 1.01883 1.01289 0.97778 1.21958 0.92902 1.03032 0.96467 1.21052 0.93845 0.83052 0.98823 0.91328 1.22138 0.95409 1.02876 1.01064 1.45790 1.65931 1.14401 1.08267 1.21186 0.75446 0.88685 0.82913 1.90514 1.54844 1.67522 1.35781 1.17938 0.98786 0.89033 0.90813 0.92259 1.20716 0.92244 1.10959 1.31123 0.93295 1.25587 0.96437 0.97920 0.96899 1.70032 1.14088 1.28256 1.41684 0.85636 0.79094 0.77906 0.79531 1.19168 1.21163 1.19937 1.20170 0.92971 0.94726 0.95592 1.20819 0.97523 0.99966 0.94628 1.21316 0.98754 1.00491 0.94743 1.21252 0.91975 1.02386 1.00649 1.21289 0.99548 1.00317 0.93548 1.21108 0.96729 1.02325 0.96023 0.91010 0.92141 0.94251 0.89604 0.91893 0.91855 0.94282 0.92075 0.89550 0.90341 0.86232 0.89331 0.92156 0.95285 0.75905 0.92584 0.88984 0.84712 0.83494 0.84296 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.21 113.37 1.16 1.89 16 2 O -0.39 -11.99 8.14 -148.98 -1.21 -13.20 16 3 C 0.10 2.44 0.82 -10.79 -0.01 2.43 16 4 C -0.17 -2.90 8.25 71.98 0.59 -2.30 16 5 C -0.18 -4.15 7.77 71.98 0.56 -3.60 16 6 C -0.11 -2.40 4.15 30.59 0.13 -2.27 16 7 C 0.14 4.25 2.25 44.99 0.10 4.35 16 8 H 0.07 2.37 5.49 -2.39 -0.01 2.35 16 9 C -0.16 -4.50 9.48 71.98 0.68 -3.82 16 10 N -0.69 -27.43 3.77 -442.53 -1.67 -29.10 16 11 C 0.53 25.30 7.01 87.66 0.61 25.91 16 12 O -0.60 -31.26 15.08 -3.03 -0.05 -31.31 16 13 C 0.06 2.87 2.38 -13.03 -0.03 2.84 16 14 H 0.06 3.33 7.13 -2.38 -0.02 3.31 16 15 C -0.51 -27.41 7.47 25.60 0.19 -27.22 16 16 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 17 C 0.03 1.77 5.45 84.65 0.46 2.23 16 18 N -0.90 -50.13 12.84 21.45 0.28 -49.86 16 19 Si 0.95 42.42 29.54 68.60 2.03 44.45 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.03 -1.70 4.30 -19.86 -0.09 -1.79 16 24 C -0.11 -5.33 8.30 22.27 0.18 -5.15 16 25 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 26 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 27 C -0.13 -5.01 10.05 22.27 0.22 -4.78 16 28 C -0.14 -6.69 9.67 22.27 0.22 -6.48 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.27 6.42 -2.39 -0.02 1.25 16 31 H 0.04 1.01 6.42 -2.39 -0.02 0.99 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.03 6.54 -2.39 -0.02 1.01 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.04 1.20 6.23 -2.39 -0.01 1.18 16 36 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.41 16.37 7.59 -92.71 -0.70 15.67 16 44 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 45 H 0.09 4.60 7.90 -2.91 -0.02 4.58 16 46 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 48 H 0.14 4.34 8.06 -2.90 -0.02 4.32 16 49 H 0.10 4.78 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -67.03 390.13 5.04 -61.99 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: 0.23 Total: 44.95 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 5.43 Total: -27.92 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -1.39 Total: -78.95 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.26 Total: -44.51 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -67.03 5.04 -61.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265513149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.898 kcal (2) G-P(sol) polarization free energy of solvation -67.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds