Wall clock time and date at job start Tue Mar 31 2020 12:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47217 * 2 1 4 4 C 1.53005 * 109.46859 * 120.00623 * 2 1 3 5 5 C 1.50702 * 109.46729 * 294.99542 * 4 2 1 6 6 H 1.08001 * 120.00333 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99758 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99908 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00173 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47339 * 89.99385 * 9 7 5 11 11 H 1.48497 * 109.46914 * 210.00020 * 9 7 5 12 12 H 1.48501 * 109.46509 * 329.99460 * 9 7 5 13 13 C 1.53001 * 109.46888 * 240.00252 * 2 1 3 14 14 N 1.46901 * 109.47233 * 60.27092 * 13 2 1 15 15 C 1.46898 * 110.99848 * 213.32767 * 14 13 2 16 16 C 1.50705 * 109.47035 * 162.22477 * 15 14 13 17 17 C 1.38237 * 119.99751 * 274.45060 * 16 15 14 18 18 C 1.38230 * 119.99854 * 179.76320 * 17 16 15 19 19 C 1.38240 * 119.99725 * 0.51165 * 18 17 16 20 20 C 1.38235 * 120.00205 * 359.74203 * 19 18 17 21 21 C 1.38229 * 120.00007 * 94.72121 * 16 15 14 22 22 C 1.46897 * 110.99767 * 89.37121 * 14 13 2 23 23 C 1.52999 * 109.47148 * 278.41809 * 22 14 13 24 24 H 1.09008 * 109.47202 * 60.60872 * 23 22 14 25 25 C 1.52999 * 109.47236 * 300.61138 * 23 22 14 26 26 C 1.50699 * 109.47146 * 180.60720 * 23 22 14 27 27 O 1.20825 * 119.99973 * 0.02562 * 26 23 22 28 28 O 1.34229 * 119.99883 * 179.97438 * 26 23 22 29 29 H 1.09001 * 109.47275 * 176.69693 * 1 2 3 30 30 H 1.09005 * 109.46898 * 296.69813 * 1 2 3 31 31 H 1.08997 * 109.47102 * 56.69558 * 1 2 3 32 32 H 1.08996 * 109.47318 * 54.99527 * 4 2 1 33 33 H 1.09000 * 109.46765 * 175.00168 * 4 2 1 34 34 H 0.96996 * 120.00123 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47104 * 180.27482 * 13 2 1 36 36 H 1.09003 * 109.47402 * 300.27162 * 13 2 1 37 37 H 1.09000 * 109.46751 * 282.22192 * 15 14 13 38 38 H 1.09002 * 109.47594 * 42.22101 * 15 14 13 39 39 H 1.07999 * 119.99765 * 359.97438 * 17 16 15 40 40 H 1.07996 * 120.00391 * 180.23221 * 18 17 16 41 41 H 1.08005 * 119.99906 * 179.72016 * 19 18 17 42 42 H 1.07999 * 120.00077 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.00447 * 0.02562 * 21 16 15 44 44 H 1.08998 * 109.47117 * 38.42038 * 22 14 13 45 45 H 1.09002 * 109.46849 * 158.42304 * 22 14 13 46 46 H 1.08998 * 109.47346 * 64.05985 * 25 23 22 47 47 H 1.09002 * 109.47154 * 184.06528 * 25 23 22 48 48 H 1.09000 * 109.46935 * 304.05699 * 25 23 22 49 49 H 0.96708 * 117.00006 * 180.02562 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0801 0.9741 2.3758 7 6 1.9932 -0.4020 3.7283 8 7 2.6763 -1.5191 3.8511 9 14 1.4985 0.5623 5.2497 10 1 0.1716 0.0933 5.7233 11 1 2.5081 0.3529 6.3184 12 1 1.4228 2.0075 4.9167 13 6 2.0400 -0.7212 -1.2493 14 7 1.5557 -0.0249 -2.4487 15 6 1.3039 -0.9730 -3.5422 16 6 0.4202 -0.3240 -4.5762 17 6 -0.9538 -0.3524 -4.4270 18 6 -1.7642 0.2471 -5.3729 19 6 -1.2009 0.8657 -6.4734 20 6 0.1729 0.8895 -6.6252 21 6 0.9834 0.2946 -5.6765 22 6 2.4978 1.0220 -2.8660 23 6 2.2679 2.2796 -2.0255 24 1 2.4370 2.0495 -0.9735 25 6 0.8295 2.7648 -2.2164 26 6 3.2244 3.3586 -2.4637 27 8 4.0091 3.1439 -3.3570 28 8 3.2038 4.5584 -1.8623 29 1 -0.3634 -1.0260 -0.0592 30 1 -0.3633 0.4617 0.9182 31 1 -0.3633 0.5643 -0.8589 32 1 1.6053 -1.7199 1.2951 33 1 3.1263 -0.7996 1.2056 34 1 2.9235 -1.8421 4.7316 35 1 3.1300 -0.7255 -1.2469 36 1 1.6727 -1.7475 -1.2518 37 1 2.2506 -1.2583 -4.0008 38 1 0.8095 -1.8605 -3.1471 39 1 -1.3939 -0.8399 -3.5697 40 1 -2.8375 0.2283 -5.2545 41 1 -1.8343 1.3302 -7.2148 42 1 0.6128 1.3724 -7.4852 43 1 2.0567 0.3126 -5.7956 44 1 3.5193 0.6702 -2.7216 45 1 2.3391 1.2549 -3.9190 46 1 0.1388 2.0139 -1.8329 47 1 0.6866 3.7001 -1.6752 48 1 0.6383 2.9261 -3.2773 49 1 3.8360 5.2187 -2.1781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592470927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:11 Heat of formation + Delta-G solvation = -95.482117 kcal Electronic energy + Delta-G solvation = -27913.798506 eV Core-core repulsion = 24225.426892 eV Total energy + Delta-G solvation = -3688.371614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50795 -40.36662 -39.00095 -37.14470 -36.24999 -34.58498 -34.10832 -31.99706 -31.68620 -28.96472 -27.70899 -27.32972 -25.97017 -25.11702 -23.42399 -23.31148 -21.84260 -20.95310 -20.64209 -19.04187 -18.45888 -17.87303 -17.54045 -16.87647 -16.54011 -16.42202 -16.14597 -16.03370 -15.61712 -15.14726 -14.98343 -14.62431 -14.36087 -14.24901 -14.15894 -13.83578 -13.50800 -13.33444 -13.25008 -13.06450 -12.94224 -12.72832 -12.63204 -12.51574 -12.48150 -12.25859 -12.22325 -12.06402 -11.87480 -11.77049 -11.74380 -11.47204 -11.16192 -10.87674 -10.72347 -10.47007 -9.70321 -9.59664 -9.23802 -8.13151 -6.21065 0.51981 0.61306 1.17958 1.42826 1.43052 1.53869 2.05280 2.45142 2.85176 3.20926 3.28420 3.69848 3.89713 3.90770 4.03755 4.18163 4.24360 4.26945 4.36380 4.38420 4.45291 4.46944 4.63298 4.69532 4.69909 4.74031 4.76981 4.88507 4.93134 4.96151 5.03005 5.03239 5.21102 5.24469 5.26869 5.37787 5.39475 5.57394 5.60928 5.63464 5.66099 5.72169 5.73683 5.80363 5.91108 5.97423 6.10120 6.14658 6.23183 6.37784 6.95745 6.98969 7.47042 8.98783 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003726 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.709772 B = 7512.183535 C = 8685.137328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 H 0.061 0.939 4 C 0.032 3.968 5 C -0.522 4.522 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.262 1.262 13 C 0.066 3.934 14 N -0.518 5.518 15 C 0.093 3.907 16 C -0.078 4.078 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.129 4.129 21 C -0.126 4.126 22 C 0.076 3.924 23 C -0.088 4.088 24 H 0.109 0.891 25 C -0.122 4.122 26 C 0.491 3.509 27 O -0.549 6.549 28 O -0.509 6.509 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.072 0.928 32 H -0.010 1.010 33 H -0.018 1.018 34 H 0.260 0.740 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.032 0.968 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.285 7.547 -20.655 22.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 H 0.079 0.921 4 C -0.006 4.006 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.187 1.187 13 C -0.062 4.062 14 N -0.241 5.241 15 C -0.034 4.034 16 C -0.079 4.079 17 C -0.125 4.125 18 C -0.145 4.145 19 C -0.145 4.145 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.052 4.052 23 C -0.107 4.107 24 H 0.127 0.873 25 C -0.179 4.179 26 C 0.335 3.665 27 O -0.440 6.440 28 O -0.323 6.323 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.008 0.992 33 H 0.001 0.999 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.151 0.849 43 H 0.135 0.865 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -6.717 7.311 -20.513 22.790 hybrid contribution 1.575 0.086 0.844 1.789 sum -5.142 7.397 -19.669 21.634 Atomic orbital electron populations 1.21530 0.94531 1.00398 1.00543 1.21158 0.96857 0.98587 0.92327 0.92099 1.19027 0.93904 0.94747 0.92912 1.21642 1.33902 1.08490 0.91937 0.91945 1.25900 0.95410 0.96060 1.02511 1.70099 1.40559 1.23040 1.24067 0.85590 0.77898 0.79499 0.78959 1.19977 1.21320 1.18658 1.22290 0.96821 0.97386 0.89674 1.61771 1.45241 1.12854 1.04196 1.21141 0.97666 0.94264 0.90306 1.19745 0.94317 0.98931 0.94899 1.21167 0.92961 0.99324 0.99011 1.21405 1.00666 0.97953 0.94444 1.21414 0.95167 0.99518 0.98405 1.21334 0.94191 0.99791 0.99415 1.21187 0.99867 0.98659 0.94775 1.21949 0.93501 0.90655 0.99140 1.21219 0.95605 0.91028 1.02852 0.87306 1.21603 0.92471 1.01978 1.01893 1.23656 0.81850 0.82871 0.78128 1.90672 1.40297 1.81792 1.31273 1.84533 1.61512 1.23969 1.62242 0.94641 0.94641 0.90881 0.99192 0.99948 0.93138 0.95349 0.91253 0.93668 0.89254 0.85718 0.84528 0.84347 0.84878 0.86457 0.95006 0.89612 0.89670 0.91698 0.92605 0.71276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.96 8.85 71.98 0.64 -3.32 16 2 C -0.07 -2.70 2.31 -10.79 -0.02 -2.72 16 3 H 0.06 2.34 4.88 -2.39 -0.01 2.33 16 4 C 0.03 1.61 4.45 29.85 0.13 1.74 16 5 C -0.52 -28.76 8.36 25.60 0.21 -28.54 16 6 H 0.06 3.30 7.07 -2.91 -0.02 3.28 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 8 N -0.94 -56.88 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 C 0.07 2.11 4.55 86.30 0.39 2.51 16 14 N -0.52 -13.48 2.84 -900.79 -2.56 -16.04 16 15 C 0.09 2.11 5.07 85.56 0.43 2.54 16 16 C -0.08 -1.67 5.06 -19.87 -0.10 -1.77 16 17 C -0.11 -2.14 9.72 22.27 0.22 -1.92 16 18 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 19 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 20 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 21 C -0.13 -2.56 8.28 22.27 0.18 -2.38 16 22 C 0.08 2.02 3.58 86.30 0.31 2.33 16 23 C -0.09 -2.34 2.62 -11.54 -0.03 -2.37 16 24 H 0.11 3.32 5.03 -2.38 -0.01 3.31 16 25 C -0.12 -2.89 8.92 71.98 0.64 -2.25 16 26 C 0.49 13.01 7.63 71.24 0.54 13.56 16 27 O -0.55 -16.98 16.74 21.97 0.37 -16.61 16 28 O -0.51 -10.78 13.25 -51.41 -0.68 -11.46 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 1.36 6.86 -2.38 -0.02 1.34 16 31 H 0.07 2.17 5.52 -2.39 -0.01 2.16 16 32 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 34 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 35 H 0.03 0.96 7.39 -2.39 -0.02 0.95 16 36 H 0.07 2.19 7.39 -2.39 -0.02 2.17 16 37 H 0.05 1.00 7.94 -2.39 -0.02 0.98 16 38 H 0.09 1.95 7.53 -2.39 -0.02 1.93 16 39 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.12 2.30 7.62 -2.91 -0.02 2.28 16 44 H 0.03 0.94 7.44 -2.39 -0.02 0.92 16 45 H 0.09 2.20 5.52 -2.39 -0.01 2.18 16 46 H 0.08 2.13 5.52 -2.39 -0.01 2.12 16 47 H 0.06 1.45 8.02 -2.39 -0.02 1.43 16 48 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.43 4.99 9.10 -74.05 -0.67 4.31 16 Total: -1.00 -67.67 387.91 4.40 -63.27 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.27 Total: 19.46 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.68 Total: -28.16 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -2.27 Total: -72.64 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.31 Total: -28.08 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.67 4.40 -63.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592470927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.209 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds