Wall clock time and date at job start Tue Mar 31 2020 14:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00434 * 2 1 4 4 C 1.38801 * 120.02535 * 359.72799 * 3 2 1 5 5 C 1.38159 * 120.05225 * 179.70478 * 4 3 2 6 6 C 1.38192 * 120.11067 * 0.59007 * 5 4 3 7 7 C 1.50693 * 119.97434 * 179.70698 * 6 5 4 8 8 H 1.09000 * 109.88518 * 173.32144 * 7 6 5 9 9 C 1.54323 * 109.89148 * 52.27964 * 7 6 5 10 10 C 1.55393 * 102.90246 * 218.41054 * 9 7 6 11 11 C 1.54907 * 101.74325 * 35.47937 * 10 9 7 12 12 N 1.47451 * 109.88531 * 294.34598 * 7 6 5 13 13 C 1.46890 * 111.00187 * 356.14659 * 12 7 6 14 14 C 1.52999 * 109.47298 * 195.75283 * 13 12 7 15 15 C 1.53006 * 109.47199 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47014 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00061 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00333 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46771 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46917 * 119.99983 * 20 18 16 23 23 H 1.48501 * 109.47011 * 240.00412 * 20 18 16 24 24 C 1.38750 * 120.05356 * 359.68534 * 6 5 4 25 25 O 1.35896 * 120.02924 * 180.02562 * 24 6 5 26 26 C 1.42899 * 117.00386 * 179.97438 * 25 24 6 27 27 C 1.38609 * 120.03119 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47441 * 59.99768 * 1 2 3 29 29 H 1.09000 * 109.47359 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46749 * 299.99969 * 1 2 3 31 31 H 1.07996 * 119.97026 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.94220 * 180.30006 * 5 4 3 33 33 H 1.08992 * 110.70474 * 336.70080 * 9 7 6 34 34 H 1.09001 * 110.70207 * 99.93124 * 9 7 6 35 35 H 1.09000 * 110.87175 * 277.39453 * 10 9 7 36 36 H 1.08997 * 111.05850 * 153.64846 * 10 9 7 37 37 H 1.08994 * 110.37848 * 204.18442 * 11 10 9 38 38 H 1.09008 * 110.46389 * 81.89520 * 11 10 9 39 39 H 1.08999 * 109.47620 * 315.75605 * 13 12 7 40 40 H 1.09007 * 109.47200 * 75.75716 * 13 12 7 41 41 H 1.08999 * 109.47266 * 299.99919 * 14 13 12 42 42 H 1.08998 * 109.47015 * 60.00560 * 14 13 12 43 43 H 1.09005 * 109.47093 * 300.00296 * 15 14 13 44 44 H 1.08998 * 109.46840 * 60.00257 * 15 14 13 45 45 H 0.96996 * 119.99702 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.47484 * 300.00183 * 26 25 24 47 47 H 1.09007 * 109.46989 * 60.00091 * 26 25 24 48 48 H 1.09000 * 109.47515 * 179.97438 * 26 25 24 49 49 H 1.07999 * 120.05484 * 0.02602 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2907 2.3752 -0.0057 5 6 1.9174 3.6065 0.0005 6 6 3.2973 3.6821 0.0000 7 6 3.9776 5.0267 0.0000 8 1 5.0534 4.8978 0.1189 9 6 3.4229 5.8958 1.1483 10 6 3.3580 7.3118 0.5115 11 6 2.9678 6.9822 -0.9509 12 7 3.6936 5.7325 -1.2630 13 6 2.9148 4.8853 -2.1759 14 6 2.9726 5.4702 -3.5886 15 6 2.1609 4.5880 -4.5394 16 6 2.2183 5.1637 -5.9308 17 1 2.7781 6.0681 -6.1184 18 6 1.5571 4.5353 -6.9647 19 7 0.8758 3.4338 -6.7364 20 14 1.6276 5.2493 -8.6895 21 1 2.4527 6.4840 -8.6806 22 1 2.2338 4.2560 -9.6119 23 1 0.2529 5.5753 -9.1468 24 6 4.0568 2.5209 -0.0001 25 8 5.4137 2.5958 0.0000 26 6 6.1317 1.3603 0.0005 27 6 3.4302 1.2840 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2122 2.3187 -0.0106 32 1 1.3279 4.5114 0.0009 33 1 2.4283 5.5591 1.4405 34 1 4.1008 5.8850 2.0018 35 1 4.3305 7.8021 0.5551 36 1 2.5933 7.9224 0.9915 37 1 3.2863 7.7829 -1.6183 38 1 1.8919 6.8266 -1.0325 39 1 3.3322 3.8784 -2.1822 40 1 1.8783 4.8469 -1.8407 41 1 2.5551 6.4770 -3.5823 42 1 4.0090 5.5085 -3.9238 43 1 2.5779 3.5809 -4.5457 44 1 1.1245 4.5500 -4.2040 45 1 0.4103 2.9919 -7.4637 46 1 5.8700 0.7883 0.8907 47 1 5.8701 0.7877 -0.8894 48 1 7.2028 1.5625 0.0001 49 1 4.0197 0.3791 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057621096.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:33 Heat of formation + Delta-G solvation = -69.420316 kcal Electronic energy + Delta-G solvation = -27960.130575 eV Core-core repulsion = 24272.889086 eV Total energy + Delta-G solvation = -3687.241489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.99527 -40.27783 -39.76161 -37.21336 -36.14091 -34.20921 -32.54003 -31.55810 -31.38244 -29.09795 -28.13945 -27.95385 -27.49838 -24.90605 -23.70824 -22.97362 -22.48967 -21.42859 -20.78959 -19.62983 -18.49071 -17.97991 -17.28652 -17.10900 -16.89432 -16.57462 -16.45153 -16.34144 -16.11050 -15.79404 -15.63076 -14.86182 -14.55615 -14.50185 -14.20863 -14.07367 -13.57601 -13.52980 -13.31204 -13.20619 -13.04219 -12.85787 -12.67740 -12.50603 -12.42082 -12.25569 -12.23081 -12.09272 -12.00293 -11.76348 -11.49784 -11.47521 -11.36884 -11.31743 -11.05349 -10.56860 -9.60450 -9.33784 -8.82947 -8.20700 -6.31995 0.26987 0.37351 1.38461 1.39289 1.53130 2.15403 2.40244 2.43216 2.60190 3.11958 3.18409 3.65606 3.67962 3.83577 3.88276 4.03501 4.19247 4.21591 4.24822 4.29008 4.35164 4.37532 4.39450 4.43193 4.47082 4.55469 4.64365 4.67075 4.70734 4.73831 4.75042 4.87335 4.96369 4.99795 5.05502 5.10226 5.14782 5.16738 5.24953 5.28705 5.35358 5.51396 5.53658 5.55477 5.73087 5.84470 6.13043 6.19298 6.24149 6.28897 6.42738 6.84330 7.37157 8.91586 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.004175 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.509720 B = 6704.598883 C = 8106.728568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.153 3.847 4 C -0.247 4.247 5 C -0.038 4.038 6 C -0.170 4.170 7 C 0.122 3.878 8 H 0.087 0.913 9 C -0.128 4.128 10 C -0.117 4.117 11 C 0.034 3.966 12 N -0.529 5.529 13 C 0.075 3.925 14 C -0.089 4.089 15 C 0.032 3.968 16 C -0.541 4.541 17 H 0.058 0.942 18 C 0.000 4.000 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.275 1.275 24 C 0.164 3.836 25 O -0.321 6.321 26 C 0.018 3.982 27 C -0.254 4.254 28 H 0.053 0.947 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.044 0.956 43 H -0.018 1.018 44 H -0.010 1.010 45 H 0.263 0.737 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.123 0.877 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.693 -1.926 21.329 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.107 3.893 4 C -0.266 4.266 5 C -0.057 4.057 6 C -0.172 4.172 7 C 0.015 3.985 8 H 0.105 0.895 9 C -0.166 4.166 10 C -0.155 4.155 11 C -0.094 4.094 12 N -0.252 5.252 13 C -0.053 4.053 14 C -0.127 4.127 15 C -0.006 4.006 16 C -0.579 4.579 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.200 1.200 24 C 0.118 3.882 25 O -0.234 6.234 26 C -0.076 4.076 27 C -0.273 4.273 28 H 0.071 0.929 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.001 0.999 44 H 0.008 0.992 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.141 0.859 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.285 -1.957 20.994 21.516 hybrid contribution -1.191 -0.619 -0.967 1.654 sum 3.094 -2.576 20.028 20.428 Atomic orbital electron populations 1.23353 0.76325 1.05697 1.02159 1.86007 1.23554 1.26628 1.88306 1.18823 0.91848 0.84728 0.93870 1.21306 1.01062 0.91855 1.12348 1.20723 0.93002 0.97603 0.94331 1.19520 0.93203 0.94215 1.10228 1.21242 0.99608 0.88452 0.89204 0.89487 1.22948 1.01830 0.94528 0.97272 1.22724 1.02993 0.96581 0.93184 1.23196 0.96185 0.92210 0.97763 1.63819 1.44453 1.05178 1.11777 1.22262 0.94910 0.95740 0.92366 1.21385 0.99164 0.98589 0.93533 1.18905 0.93774 0.93966 0.93907 1.21697 1.31161 1.10335 0.94707 0.92381 1.25996 0.94742 0.95229 1.03804 1.70117 1.33919 1.19674 1.33703 0.85386 0.78197 0.78677 0.78723 1.18614 1.20307 1.20046 1.18547 0.83109 0.92604 0.93974 1.86080 1.14699 1.34513 1.88121 1.23354 0.97603 0.84631 1.02025 1.20518 0.93020 0.97862 1.15905 0.92852 0.85880 0.90998 0.83762 0.84761 0.90858 0.89205 0.90065 0.88833 0.90617 0.94066 0.93233 0.94754 0.93208 0.93766 0.99919 0.99184 0.92779 0.91177 0.92810 0.85890 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.88 10.49 -92.35 -0.97 -9.85 16 3 C 0.15 4.48 6.68 22.49 0.15 4.63 16 4 C -0.25 -6.89 9.04 22.39 0.20 -6.69 16 5 C -0.04 -1.08 6.35 22.24 0.14 -0.94 16 6 C -0.17 -5.03 2.98 -19.76 -0.06 -5.09 16 7 C 0.12 3.42 3.58 44.51 0.16 3.58 16 8 H 0.09 2.58 7.05 -2.39 -0.02 2.56 16 9 C -0.13 -2.66 6.35 31.87 0.20 -2.46 16 10 C -0.12 -2.30 7.08 32.07 0.23 -2.07 16 11 C 0.03 0.92 6.07 86.77 0.53 1.45 16 12 N -0.53 -17.18 5.12 -864.89 -4.43 -21.61 16 13 C 0.08 2.93 3.44 86.30 0.30 3.23 16 14 C -0.09 -4.08 5.27 30.60 0.16 -3.92 16 15 C 0.03 1.82 4.97 29.85 0.15 1.97 16 16 C -0.54 -32.45 9.11 25.60 0.23 -32.22 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 19 N -0.93 -58.60 13.29 21.45 0.28 -58.31 16 20 Si 0.97 45.65 29.54 68.60 2.03 47.67 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.16 4.90 6.49 22.49 0.15 5.04 16 25 O -0.32 -8.80 9.29 -92.38 -0.86 -9.66 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 C -0.25 -7.31 8.97 22.46 0.20 -7.11 16 28 H 0.05 1.08 7.65 -2.39 -0.02 1.06 16 29 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.09 7.67 -2.38 -0.02 1.07 16 31 H 0.14 3.40 6.29 -2.91 -0.02 3.38 16 32 H 0.13 3.52 6.78 -2.91 -0.02 3.50 16 33 H 0.07 1.47 6.53 -2.39 -0.02 1.46 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.04 1.14 7.53 -2.38 -0.02 1.13 16 39 H 0.05 2.13 6.45 -2.39 -0.02 2.11 16 40 H 0.03 1.33 5.43 -2.38 -0.01 1.31 16 41 H 0.05 2.21 7.70 -2.39 -0.02 2.19 16 42 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 43 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 44 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 45 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 47 H 0.05 1.05 7.66 -2.38 -0.02 1.03 16 48 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.15 3.66 6.30 -2.91 -0.02 3.64 16 Total: -1.00 -72.75 380.56 2.41 -70.35 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.93 Total: 18.64 kcal Atomic # 6 Polarization: -42.67 SS G_CDS: 5.43 Total: -37.24 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -4.14 Total: -79.92 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -1.83 Total: -19.50 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.75 2.41 -70.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057621096.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.926 kcal (2) G-P(sol) polarization free energy of solvation -72.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds