Wall clock time and date at job start Tue Mar 31 2020 12:07:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08993 * 109.47205 * 2 1
4 4 O 1.42898 * 109.46963 * 120.00264 * 2 1 3
5 5 C 1.35897 * 116.99882 * 276.87204 * 4 2 1
6 6 C 1.38729 * 120.05786 * 356.20718 * 5 4 2
7 7 C 1.38144 * 119.94640 * 180.29669 * 6 5 4
8 8 C 1.38268 * 120.05483 * 359.95325 * 7 6 5
9 9 C 1.50696 * 119.94280 * 180.02562 * 8 7 6
10 10 C 1.53000 * 109.47065 * 240.01774 * 9 8 7
11 11 C 1.53006 * 109.47381 * 0.02562 * 9 8 7
12 12 C 1.52996 * 109.47272 * 120.01855 * 9 8 7
13 13 C 1.38261 * 120.11154 * 0.03993 * 8 7 6
14 14 C 1.38144 * 120.05548 * 359.97438 * 13 8 7
15 15 C 1.50699 * 109.47099 * 240.00006 * 2 1 3
16 16 O 1.21283 * 120.00139 * 254.74869 * 15 2 1
17 17 N 1.34777 * 120.00057 * 74.74430 * 15 2 1
18 18 C 1.46504 * 119.99954 * 4.90839 * 17 15 2
19 19 C 1.46498 * 120.00293 * 184.90389 * 17 15 2
20 20 C 1.50701 * 109.47015 * 90.00360 * 19 17 15
21 21 H 1.08003 * 120.00084 * 359.97438 * 20 19 17
22 22 C 1.37884 * 120.00002 * 180.02562 * 20 19 17
23 23 N 1.31507 * 119.99731 * 359.97438 * 22 20 19
24 24 Si 1.86800 * 119.99888 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47029 * 59.99749 * 24 22 20
26 26 H 1.48497 * 109.46954 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.46979 * 300.00178 * 24 22 20
28 28 H 1.09000 * 109.47225 * 295.40828 * 1 2 3
29 29 H 1.09004 * 109.46799 * 55.40372 * 1 2 3
30 30 H 1.09001 * 109.47190 * 175.40401 * 1 2 3
31 31 H 1.08005 * 120.02687 * 0.24560 * 6 5 4
32 32 H 1.08001 * 119.97088 * 179.97438 * 7 6 5
33 33 H 1.09004 * 109.46817 * 60.00280 * 10 9 8
34 34 H 1.09001 * 109.47426 * 179.97438 * 10 9 8
35 35 H 1.08997 * 109.47234 * 300.00214 * 10 9 8
36 36 H 1.09007 * 109.46320 * 60.00235 * 11 9 8
37 37 H 1.08992 * 109.47292 * 179.97438 * 11 9 8
38 38 H 1.08998 * 109.46843 * 300.00354 * 11 9 8
39 39 H 1.09003 * 109.47135 * 60.00195 * 12 9 8
40 40 H 1.09006 * 109.47527 * 179.97438 * 12 9 8
41 41 H 1.08997 * 109.47232 * 299.99865 * 12 9 8
42 42 H 1.08004 * 119.97141 * 179.97438 * 13 8 7
43 43 H 1.08002 * 120.02401 * 179.97438 * 14 13 8
44 44 H 1.09004 * 109.46923 * 94.36231 * 18 17 15
45 45 H 1.08990 * 109.47194 * 214.36498 * 18 17 15
46 46 H 1.09004 * 109.46899 * 334.36861 * 18 17 15
47 47 H 1.09002 * 109.47755 * 210.00375 * 19 17 15
48 48 H 1.09001 * 109.47191 * 330.00396 * 19 17 15
49 49 H 0.97007 * 119.99629 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.0754 0.0524 2.3134
6 6 1.7678 1.4051 2.2989
7 6 1.8447 2.1423 3.4646
8 6 2.2268 1.5329 4.6455
9 6 2.3093 2.3394 5.9158
10 6 3.7392 2.2919 6.4581
11 6 1.9220 3.7907 5.6246
12 6 1.3503 1.7543 6.9545
13 6 2.5337 0.1848 4.6626
14 6 2.4587 -0.5567 3.4995
15 6 2.0324 -0.7104 -1.2305
16 8 2.4950 -1.8278 -1.1392
17 7 1.9674 -0.1041 -2.4324
18 6 1.5092 1.2841 -2.5287
19 6 2.3552 -0.8330 -3.6425
20 6 1.1503 -1.5354 -4.2135
21 1 0.1918 -1.4480 -3.7237
22 6 1.2720 -2.2907 -5.3607
23 7 2.4393 -2.3976 -5.9568
24 14 -0.2213 -3.1619 -6.0681
25 1 -1.2644 -2.1606 -6.4066
26 1 0.1717 -3.9007 -7.2948
27 1 -0.7585 -4.1165 -5.0653
28 1 -0.3634 0.4409 0.9283
29 1 -0.3633 0.5835 -0.8460
30 1 -0.3633 -1.0244 -0.0823
31 1 1.4694 1.8816 1.3767
32 1 1.6058 3.1955 3.4537
33 1 4.4224 2.7088 5.7180
34 1 3.7990 2.8756 7.3767
35 1 4.0150 1.2581 6.6655
36 1 0.9031 3.8242 5.2384
37 1 1.9811 4.3738 6.5435
38 1 2.6051 4.2075 4.8846
39 1 1.6261 0.7204 7.1620
40 1 1.4102 2.3374 7.8735
41 1 0.3316 1.7881 6.5682
42 1 2.8323 -0.2888 5.5862
43 1 2.6989 -1.6096 3.5134
44 1 2.3702 1.9525 -2.5176
45 1 0.9554 1.4203 -3.4575
46 1 0.8612 1.5124 -1.6825
47 1 2.7497 -0.1322 -4.3783
48 1 3.1206 -1.5683 -3.3942
49 1 2.5248 -2.9286 -6.7641
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000060657675.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:10
Heat of formation + Delta-G solvation = -54.253443 kcal
Electronic energy + Delta-G solvation = -26942.551000 eV
Core-core repulsion = 23255.967195 eV
Total energy + Delta-G solvation = -3686.583804 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.63814 -39.40368 -38.09153 -35.67904 -34.89110 -32.84972 -31.82189 -31.01643
-29.01881 -27.80863 -27.62759 -27.51618 -26.08096 -24.51015 -23.15972 -22.72932
-21.73395 -19.44183 -18.69847 -18.33098 -16.61711 -16.45830 -16.16375 -15.53870
-15.42834 -15.08859 -14.75809 -14.57527 -14.46977 -14.23489 -13.93488 -13.54711
-13.31573 -13.14480 -12.92944 -12.79323 -12.51035 -12.43123 -12.19688 -12.11567
-12.05272 -11.97165 -11.74955 -11.70849 -11.34512 -11.23236 -11.16741 -10.93677
-10.90227 -10.77814 -10.59863 -10.49990 -10.18340 -9.68671 -9.06592 -8.92397
-8.45987 -8.05834 -7.72731 -6.07017 -4.12403 1.27160 1.37403 2.96484
3.24538 3.30375 3.35092 3.39157 3.67178 4.06497 4.38211 4.41978
4.48540 4.68928 4.72881 4.82645 4.87483 4.98515 5.03751 5.07876
5.23218 5.27256 5.27854 5.33378 5.38517 5.45732 5.47183 5.52645
5.59234 5.60908 5.65745 5.68096 5.74305 5.79360 5.83743 5.94735
5.98249 6.02872 6.08406 6.21647 6.28426 6.34366 6.54107 6.70731
6.97130 7.39522 7.41685 7.51546 7.88812 8.18729 8.29305 8.83936
8.99146 9.52619 11.01079
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.031503 B = 0.002377 C = 0.002352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.589252 B =11778.088263 C =11900.813727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.065 3.935
3 H 0.090 0.910
4 O -0.284 6.284
5 C 0.134 3.866
6 C -0.212 4.212
7 C -0.080 4.080
8 C -0.117 4.117
9 C -0.024 4.024
10 C -0.139 4.139
11 C -0.144 4.144
12 C -0.138 4.138
13 C -0.075 4.075
14 C -0.150 4.150
15 C 0.512 3.488
16 O -0.519 6.519
17 N -0.597 5.597
18 C 0.073 3.927
19 C 0.246 3.754
20 C -0.530 4.530
21 H 0.057 0.943
22 C 0.062 3.938
23 N -0.893 5.893
24 Si 0.899 3.101
25 H -0.277 1.277
26 H -0.286 1.286
27 H -0.276 1.276
28 H 0.068 0.932
29 H 0.083 0.917
30 H 0.075 0.925
31 H 0.129 0.871
32 H 0.127 0.873
33 H 0.056 0.944
34 H 0.055 0.945
35 H 0.056 0.944
36 H 0.058 0.942
37 H 0.056 0.944
38 H 0.058 0.942
39 H 0.056 0.944
40 H 0.055 0.945
41 H 0.056 0.944
42 H 0.125 0.875
43 H 0.131 0.869
44 H 0.048 0.952
45 H 0.077 0.923
46 H 0.060 0.940
47 H 0.035 0.965
48 H 0.046 0.954
49 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.114 14.299 23.233 27.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.005 3.995
3 H 0.107 0.893
4 O -0.196 6.196
5 C 0.088 3.912
6 C -0.231 4.231
7 C -0.098 4.098
8 C -0.117 4.117
9 C -0.024 4.024
10 C -0.196 4.196
11 C -0.201 4.201
12 C -0.196 4.196
13 C -0.093 4.093
14 C -0.169 4.169
15 C 0.296 3.704
16 O -0.394 6.394
17 N -0.331 5.331
18 C -0.071 4.071
19 C 0.127 3.873
20 C -0.569 4.569
21 H 0.076 0.924
22 C -0.141 4.141
23 N -0.532 5.532
24 Si 0.727 3.273
25 H -0.202 1.202
26 H -0.211 1.211
27 H -0.201 1.201
28 H 0.087 0.913
29 H 0.101 0.899
30 H 0.094 0.906
31 H 0.147 0.853
32 H 0.144 0.856
33 H 0.075 0.925
34 H 0.074 0.926
35 H 0.076 0.924
36 H 0.077 0.923
37 H 0.075 0.925
38 H 0.077 0.923
39 H 0.075 0.925
40 H 0.074 0.926
41 H 0.075 0.925
42 H 0.143 0.857
43 H 0.149 0.851
44 H 0.066 0.934
45 H 0.096 0.904
46 H 0.078 0.922
47 H 0.053 0.947
48 H 0.064 0.936
49 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -1.708 13.398 23.046 26.712
hybrid contribution -0.931 -0.237 -0.683 1.179
sum -2.638 13.161 22.362 26.082
Atomic orbital electron populations
1.22316 0.92913 1.04685 1.03179 1.22365 0.95717 0.96827 0.84547
0.89291 1.86259 1.80108 1.38041 1.15169 1.19157 0.95038 0.90229
0.86735 1.21294 1.08482 0.93531 0.99767 1.20925 0.97748 0.99665
0.91414 1.19642 1.03403 0.94061 0.94631 1.19404 0.95970 0.94505
0.92541 1.21898 0.95118 1.01982 1.00594 1.21962 1.01512 0.95007
1.01634 1.21896 0.99074 1.00788 0.97802 1.20731 0.98179 0.93288
0.97125 1.20444 1.05344 1.00954 0.90143 1.19728 0.80241 0.86746
0.83708 1.90703 1.44384 1.18931 1.85363 1.48060 1.64618 1.12847
1.07590 1.21840 0.99089 0.83161 1.02983 1.19340 0.96649 0.91989
0.79276 1.21381 0.95335 1.30677 1.09489 0.92443 1.24941 0.96223
0.96201 0.96703 1.69922 1.23168 1.40441 1.19675 0.86544 0.82642
0.79794 0.78366 1.20222 1.21127 1.20130 0.91256 0.89877 0.90559
0.85345 0.85556 0.92478 0.92557 0.92447 0.92293 0.92512 0.92266
0.92462 0.92563 0.92507 0.85716 0.85129 0.93367 0.90403 0.92159
0.94669 0.93599 0.92581
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.40 8.97 37.16 0.33 -2.06 16
2 C 0.07 1.06 1.81 -27.88 -0.05 1.01 16
3 H 0.09 1.19 5.06 -51.93 -0.26 0.93 16
4 O -0.28 -4.99 9.38 -38.88 -0.36 -5.35 16
5 C 0.13 1.93 6.50 -39.22 -0.25 1.67 16
6 C -0.21 -2.52 8.36 -39.43 -0.33 -2.85 16
7 C -0.08 -0.81 8.97 -39.60 -0.36 -1.17 16
8 C -0.12 -1.14 4.76 -104.60 -0.50 -1.64 16
9 C -0.02 -0.18 0.85 -155.66 -0.13 -0.31 16
10 C -0.14 -0.97 8.29 37.16 0.31 -0.66 16
11 C -0.14 -0.94 7.13 37.16 0.27 -0.67 16
12 C -0.14 -0.94 8.29 37.16 0.31 -0.63 16
13 C -0.08 -0.79 8.70 -39.61 -0.34 -1.13 16
14 C -0.15 -1.93 9.99 -39.43 -0.39 -2.33 16
15 C 0.51 11.10 6.97 -10.99 -0.08 11.02 16
16 O -0.52 -13.87 16.12 -13.91 -0.22 -14.10 16
17 N -0.60 -12.68 2.86 -182.95 -0.52 -13.20 16
18 C 0.07 1.12 9.99 59.85 0.60 1.71 16
19 C 0.25 6.45 5.22 -5.19 -0.03 6.42 16
20 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16
21 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16
22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
23 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16
24 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16
25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16
27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
28 H 0.07 0.80 7.38 -51.93 -0.38 0.42 16
29 H 0.08 1.03 6.21 -51.93 -0.32 0.71 16
30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
31 H 0.13 1.35 5.74 -52.48 -0.30 1.05 16
32 H 0.13 1.02 5.89 -52.49 -0.31 0.72 16
33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
35 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16
36 H 0.06 0.38 7.51 -51.92 -0.39 -0.01 16
37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
38 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16
39 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16
40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.12 1.04 7.09 -52.48 -0.37 0.67 16
43 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16
44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16
46 H 0.06 0.72 4.45 -51.93 -0.23 0.49 16
47 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16
48 H 0.05 1.37 7.36 -51.93 -0.38 0.98 16
49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
LS Contribution 388.46 15.07 5.85 5.85
Total: -1.00 -33.96 388.46 -8.49 -42.45
By element:
Atomic # 1 Polarization: 6.49 SS G_CDS: -7.88 Total: -1.39 kcal
Atomic # 6 Polarization: -4.15 SS G_CDS: -1.07 Total: -5.22 kcal
Atomic # 7 Polarization: -39.21 SS G_CDS: 0.21 Total: -39.00 kcal
Atomic # 8 Polarization: -18.86 SS G_CDS: -0.59 Total: -19.45 kcal
Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -33.96 -8.49 -42.45 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060657675.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.805 kcal
(2) G-P(sol) polarization free energy of solvation -33.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds