Wall clock time and date at job start Tue Mar 31 2020 12:07:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08993 * 109.47205 * 2 1
4 4 O 1.42898 * 109.46963 * 120.00264 * 2 1 3
5 5 C 1.35897 * 116.99882 * 276.87204 * 4 2 1
6 6 C 1.38729 * 120.05786 * 356.20718 * 5 4 2
7 7 C 1.38144 * 119.94640 * 180.29669 * 6 5 4
8 8 C 1.38268 * 120.05483 * 359.95325 * 7 6 5
9 9 C 1.50696 * 119.94280 * 180.02562 * 8 7 6
10 10 C 1.53000 * 109.47065 * 240.01774 * 9 8 7
11 11 C 1.53006 * 109.47381 * 0.02562 * 9 8 7
12 12 C 1.52996 * 109.47272 * 120.01855 * 9 8 7
13 13 C 1.38261 * 120.11154 * 0.03993 * 8 7 6
14 14 C 1.38144 * 120.05548 * 359.97438 * 13 8 7
15 15 C 1.50699 * 109.47099 * 240.00006 * 2 1 3
16 16 O 1.21283 * 120.00139 * 254.74869 * 15 2 1
17 17 N 1.34777 * 120.00057 * 74.74430 * 15 2 1
18 18 C 1.46504 * 119.99954 * 4.90839 * 17 15 2
19 19 C 1.46498 * 120.00293 * 184.90389 * 17 15 2
20 20 C 1.50701 * 109.47015 * 90.00360 * 19 17 15
21 21 H 1.08003 * 120.00084 * 359.97438 * 20 19 17
22 22 C 1.37884 * 120.00002 * 180.02562 * 20 19 17
23 23 N 1.31507 * 119.99731 * 359.97438 * 22 20 19
24 24 Si 1.86800 * 119.99888 * 179.97438 * 22 20 19
25 25 H 1.48503 * 109.47029 * 59.99749 * 24 22 20
26 26 H 1.48497 * 109.46954 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.46979 * 300.00178 * 24 22 20
28 28 H 1.09000 * 109.47225 * 295.40828 * 1 2 3
29 29 H 1.09004 * 109.46799 * 55.40372 * 1 2 3
30 30 H 1.09001 * 109.47190 * 175.40401 * 1 2 3
31 31 H 1.08005 * 120.02687 * 0.24560 * 6 5 4
32 32 H 1.08001 * 119.97088 * 179.97438 * 7 6 5
33 33 H 1.09004 * 109.46817 * 60.00280 * 10 9 8
34 34 H 1.09001 * 109.47426 * 179.97438 * 10 9 8
35 35 H 1.08997 * 109.47234 * 300.00214 * 10 9 8
36 36 H 1.09007 * 109.46320 * 60.00235 * 11 9 8
37 37 H 1.08992 * 109.47292 * 179.97438 * 11 9 8
38 38 H 1.08998 * 109.46843 * 300.00354 * 11 9 8
39 39 H 1.09003 * 109.47135 * 60.00195 * 12 9 8
40 40 H 1.09006 * 109.47527 * 179.97438 * 12 9 8
41 41 H 1.08997 * 109.47232 * 299.99865 * 12 9 8
42 42 H 1.08004 * 119.97141 * 179.97438 * 13 8 7
43 43 H 1.08002 * 120.02401 * 179.97438 * 14 13 8
44 44 H 1.09004 * 109.46923 * 94.36231 * 18 17 15
45 45 H 1.08990 * 109.47194 * 214.36498 * 18 17 15
46 46 H 1.09004 * 109.46899 * 334.36861 * 18 17 15
47 47 H 1.09002 * 109.47755 * 210.00375 * 19 17 15
48 48 H 1.09001 * 109.47191 * 330.00396 * 19 17 15
49 49 H 0.97007 * 119.99629 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.0754 0.0524 2.3134
6 6 1.7678 1.4051 2.2989
7 6 1.8447 2.1423 3.4646
8 6 2.2268 1.5329 4.6455
9 6 2.3093 2.3394 5.9158
10 6 3.7392 2.2919 6.4581
11 6 1.9220 3.7907 5.6246
12 6 1.3503 1.7543 6.9545
13 6 2.5337 0.1848 4.6626
14 6 2.4587 -0.5567 3.4995
15 6 2.0324 -0.7104 -1.2305
16 8 2.4950 -1.8278 -1.1392
17 7 1.9674 -0.1041 -2.4324
18 6 1.5092 1.2841 -2.5287
19 6 2.3552 -0.8330 -3.6425
20 6 1.1503 -1.5354 -4.2135
21 1 0.1918 -1.4480 -3.7237
22 6 1.2720 -2.2907 -5.3607
23 7 2.4393 -2.3976 -5.9568
24 14 -0.2213 -3.1619 -6.0681
25 1 -1.2644 -2.1606 -6.4066
26 1 0.1717 -3.9007 -7.2948
27 1 -0.7585 -4.1165 -5.0653
28 1 -0.3634 0.4409 0.9283
29 1 -0.3633 0.5835 -0.8460
30 1 -0.3633 -1.0244 -0.0823
31 1 1.4694 1.8816 1.3767
32 1 1.6058 3.1955 3.4537
33 1 4.4224 2.7088 5.7180
34 1 3.7990 2.8756 7.3767
35 1 4.0150 1.2581 6.6655
36 1 0.9031 3.8242 5.2384
37 1 1.9811 4.3738 6.5435
38 1 2.6051 4.2075 4.8846
39 1 1.6261 0.7204 7.1620
40 1 1.4102 2.3374 7.8735
41 1 0.3316 1.7881 6.5682
42 1 2.8323 -0.2888 5.5862
43 1 2.6989 -1.6096 3.5134
44 1 2.3702 1.9525 -2.5176
45 1 0.9554 1.4203 -3.4575
46 1 0.8612 1.5124 -1.6825
47 1 2.7497 -0.1322 -4.3783
48 1 3.1206 -1.5683 -3.3942
49 1 2.5248 -2.9286 -6.7641
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000060657675.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:07:09
Heat of formation + Delta-G solvation = -73.292107 kcal
Electronic energy + Delta-G solvation = -26943.376578 eV
Core-core repulsion = 23255.967195 eV
Total energy + Delta-G solvation = -3687.409383 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.76520 -40.64910 -39.28363 -36.74813 -36.44958 -34.86509 -33.11227 -31.96344
-29.94659 -29.64524 -28.18113 -28.03067 -27.56555 -26.02540 -24.66880 -23.57632
-22.97658 -20.40761 -19.95419 -19.45555 -18.70801 -17.97014 -17.39341 -16.77022
-16.66768 -16.41635 -15.98655 -15.95019 -15.58968 -15.05295 -14.83874 -14.70596
-14.36497 -14.26224 -14.14514 -13.92371 -13.63592 -13.54463 -13.50945 -13.33252
-13.21875 -13.00437 -12.80847 -12.71952 -12.67617 -12.53210 -12.47677 -12.22411
-12.12563 -11.93825 -11.75361 -11.60762 -11.55080 -11.27637 -10.66133 -10.63675
-9.92465 -9.52570 -9.00936 -8.24615 -6.39706 0.40946 0.47488 1.35888
1.40684 1.47477 1.59258 1.68623 2.36406 2.65506 2.80969 3.05398
3.42113 3.61116 3.74749 3.83467 3.86256 3.99188 4.16364 4.19735
4.24300 4.38903 4.44324 4.48963 4.58161 4.62824 4.66162 4.74703
4.85043 4.86392 4.88735 4.94793 4.97320 5.05310 5.09424 5.10730
5.10836 5.14251 5.18860 5.27394 5.38504 5.44442 5.49865 5.50881
5.55053 5.75649 5.76455 5.87575 6.01696 6.40376 6.62295 6.69392
7.20698 7.35454 8.82799
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.031503 B = 0.002377 C = 0.002352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.589252 B =11778.088263 C =11900.813727
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.079 3.921
3 H 0.125 0.875
4 O -0.320 6.320
5 C 0.102 3.898
6 C -0.211 4.211
7 C -0.079 4.079
8 C -0.111 4.111
9 C -0.024 4.024
10 C -0.139 4.139
11 C -0.144 4.144
12 C -0.138 4.138
13 C -0.075 4.075
14 C -0.169 4.169
15 C 0.499 3.501
16 O -0.587 6.587
17 N -0.600 5.600
18 C 0.064 3.936
19 C 0.258 3.742
20 C -0.545 4.545
21 H 0.057 0.943
22 C 0.007 3.993
23 N -0.928 5.928
24 Si 0.969 3.031
25 H -0.256 1.256
26 H -0.279 1.279
27 H -0.279 1.279
28 H 0.098 0.902
29 H 0.102 0.898
30 H 0.049 0.951
31 H 0.146 0.854
32 H 0.153 0.847
33 H 0.049 0.951
34 H 0.070 0.930
35 H 0.055 0.945
36 H 0.061 0.939
37 H 0.068 0.932
38 H 0.059 0.941
39 H 0.055 0.945
40 H 0.069 0.931
41 H 0.052 0.948
42 H 0.143 0.857
43 H 0.120 0.880
44 H 0.074 0.926
45 H 0.076 0.924
46 H 0.100 0.900
47 H 0.031 0.969
48 H -0.005 1.005
49 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.046 17.261 24.947 30.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.020 3.980
3 H 0.142 0.858
4 O -0.234 6.234
5 C 0.057 3.943
6 C -0.229 4.229
7 C -0.097 4.097
8 C -0.112 4.112
9 C -0.024 4.024
10 C -0.196 4.196
11 C -0.202 4.202
12 C -0.195 4.195
13 C -0.093 4.093
14 C -0.188 4.188
15 C 0.286 3.714
16 O -0.467 6.467
17 N -0.333 5.333
18 C -0.077 4.077
19 C 0.137 3.863
20 C -0.583 4.583
21 H 0.076 0.924
22 C -0.193 4.193
23 N -0.568 5.568
24 Si 0.793 3.207
25 H -0.181 1.181
26 H -0.204 1.204
27 H -0.205 1.205
28 H 0.117 0.883
29 H 0.121 0.879
30 H 0.068 0.932
31 H 0.163 0.837
32 H 0.171 0.829
33 H 0.069 0.931
34 H 0.089 0.911
35 H 0.074 0.926
36 H 0.080 0.920
37 H 0.087 0.913
38 H 0.078 0.922
39 H 0.074 0.926
40 H 0.088 0.912
41 H 0.071 0.929
42 H 0.161 0.839
43 H 0.138 0.862
44 H 0.092 0.908
45 H 0.095 0.905
46 H 0.118 0.882
47 H 0.049 0.951
48 H 0.014 0.986
49 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -3.660 16.430 24.776 29.954
hybrid contribution -0.246 -1.104 -1.089 1.570
sum -3.906 15.326 23.688 28.483
Atomic orbital electron populations
1.22319 0.90840 1.03717 1.05526 1.22254 0.96903 0.97016 0.81872
0.85789 1.86202 1.81178 1.39716 1.16283 1.19420 0.97526 0.91453
0.85897 1.21479 1.07934 0.92381 1.01145 1.21265 0.96834 1.00804
0.90793 1.20019 1.01511 0.93860 0.95761 1.19473 0.96528 0.94920
0.91493 1.21904 0.94526 1.02150 1.01039 1.21973 1.01646 0.94164
1.02368 1.21896 0.98535 1.00960 0.98131 1.20943 0.97671 0.93764
0.96884 1.20596 1.06232 1.01008 0.90942 1.20811 0.78950 0.86268
0.85334 1.90656 1.47339 1.22105 1.86572 1.48054 1.64157 1.14901
1.06152 1.22213 1.00914 0.79826 1.04744 1.18826 0.95037 0.91292
0.81104 1.21665 0.95704 1.31199 1.09770 0.92438 1.25894 0.99383
0.96856 0.97124 1.70049 1.25363 1.41193 1.20159 0.85448 0.79098
0.78736 0.77428 1.18054 1.20401 1.20464 0.88336 0.87939 0.93213
0.83679 0.82947 0.93137 0.91135 0.92625 0.91977 0.91342 0.92177
0.92622 0.91184 0.92917 0.83921 0.86170 0.90762 0.90519 0.88203
0.95094 0.98638 0.92342
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.31 8.97 71.98 0.65 -3.66 16
2 C 0.08 2.51 1.81 29.85 0.05 2.56 16
3 H 0.12 2.98 5.06 -2.39 -0.01 2.97 16
4 O -0.32 -11.51 9.38 -73.78 -0.69 -12.20 16
5 C 0.10 2.88 6.50 22.51 0.15 3.03 16
6 C -0.21 -4.51 8.36 22.36 0.19 -4.32 16
7 C -0.08 -1.37 8.97 22.25 0.20 -1.17 16
8 C -0.11 -1.91 4.76 -19.85 -0.09 -2.00 16
9 C -0.02 -0.29 0.85 -52.93 -0.05 -0.34 16
10 C -0.14 -1.58 8.29 71.98 0.60 -0.98 16
11 C -0.14 -1.37 7.13 71.98 0.51 -0.86 16
12 C -0.14 -1.50 8.29 71.98 0.60 -0.90 16
13 C -0.07 -1.48 8.70 22.25 0.19 -1.29 16
14 C -0.17 -4.41 9.99 22.37 0.22 -4.18 16
15 C 0.50 22.32 6.97 87.66 0.61 22.93 16
16 O -0.59 -33.53 16.12 15.57 0.25 -33.28 16
17 N -0.60 -25.84 2.86 -851.12 -2.43 -28.27 16
18 C 0.06 1.83 9.99 127.77 1.28 3.10 16
19 C 0.26 14.16 5.22 85.63 0.45 14.61 16
20 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16
21 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16
22 C 0.01 0.38 5.46 84.66 0.46 0.84 16
23 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16
24 Si 0.97 44.97 29.54 68.60 2.03 47.00 16
25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16
26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
28 H 0.10 1.98 7.38 -2.39 -0.02 1.97 16
29 H 0.10 2.20 6.21 -2.39 -0.01 2.19 16
30 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16
31 H 0.15 2.49 5.74 -2.91 -0.02 2.47 16
32 H 0.15 1.83 5.89 -2.91 -0.02 1.81 16
33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16
34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
35 H 0.05 0.65 7.38 -2.39 -0.02 0.63 16
36 H 0.06 0.56 7.51 -2.38 -0.02 0.54 16
37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
38 H 0.06 0.57 7.51 -2.39 -0.02 0.55 16
39 H 0.05 0.62 7.38 -2.39 -0.02 0.60 16
40 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16
41 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16
42 H 0.14 2.20 7.09 -2.91 -0.02 2.18 16
43 H 0.12 3.23 8.06 -2.91 -0.02 3.20 16
44 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16
45 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16
46 H 0.10 2.02 4.45 -2.39 -0.01 2.01 16
47 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16
48 H 0.00 -0.29 7.36 -2.39 -0.02 -0.31 16
49 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16
Total: -1.00 -79.46 388.46 6.62 -72.84
By element:
Atomic # 1 Polarization: 13.22 SS G_CDS: 0.93 Total: 14.15 kcal
Atomic # 6 Polarization: -10.13 SS G_CDS: 6.25 Total: -3.87 kcal
Atomic # 7 Polarization: -82.49 SS G_CDS: -2.15 Total: -84.63 kcal
Atomic # 8 Polarization: -45.04 SS G_CDS: -0.44 Total: -45.48 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -79.46 6.62 -72.84 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000060657675.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.454 kcal
(2) G-P(sol) polarization free energy of solvation -79.459 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.914 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds