Wall clock time and date at job start Tue Mar 31 2020 12:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99757 * 2 1 4 4 C 1.50696 * 120.00372 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.47179 * 95.01062 * 4 2 1 6 6 C 1.46897 * 111.00299 * 292.33024 * 5 4 2 7 7 C 1.52996 * 109.46897 * 298.55430 * 6 5 4 8 8 C 1.46899 * 110.99792 * 168.36999 * 5 4 2 9 9 C 1.53003 * 109.47271 * 200.74712 * 8 5 4 10 10 H 1.09006 * 109.46529 * 53.63876 * 9 8 5 11 11 O 1.42903 * 109.46968 * 293.64287 * 9 8 5 12 12 C 1.52997 * 109.47631 * 173.63767 * 9 8 5 13 13 O 1.42893 * 109.47388 * 185.00561 * 12 9 8 14 14 C 1.35675 * 116.99896 * 180.02562 * 13 12 9 15 15 C 1.39315 * 119.81559 * 179.97438 * 14 13 12 16 16 C 1.36439 * 120.18196 * 179.72420 * 15 14 13 17 17 C 1.40831 * 119.81245 * 0.27663 * 16 15 14 18 18 C 1.41226 * 120.17792 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99919 * 210.29936 * 18 17 16 20 20 C 1.39883 * 119.99878 * 30.31006 * 18 17 16 21 21 N 1.30877 * 120.00188 * 12.89131 * 20 18 17 22 22 Si 1.86798 * 119.99781 * 192.89999 * 20 18 17 23 23 H 1.48498 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47327 * 119.99792 * 22 20 18 25 25 H 1.48506 * 109.46863 * 239.99446 * 22 20 18 26 26 C 1.40828 * 119.64507 * 0.02562 * 17 16 15 27 27 C 1.36438 * 119.80957 * 359.97438 * 26 17 16 28 28 H 1.07993 * 120.00022 * 185.28328 * 1 2 3 29 29 H 1.08002 * 119.99966 * 5.27984 * 1 2 3 30 30 H 1.08994 * 109.47334 * 269.99818 * 3 2 1 31 31 H 1.08993 * 109.47122 * 30.00337 * 3 2 1 32 32 H 1.09001 * 109.46451 * 150.00190 * 3 2 1 33 33 H 1.09009 * 109.46691 * 335.01718 * 4 2 1 34 34 H 1.08993 * 109.47473 * 215.01491 * 4 2 1 35 35 H 1.08998 * 109.47387 * 58.55722 * 6 5 4 36 36 H 1.09001 * 109.47118 * 178.55678 * 6 5 4 37 37 H 1.09005 * 109.47137 * 179.45652 * 7 6 5 38 38 H 1.08991 * 109.47541 * 299.45985 * 7 6 5 39 39 H 1.09003 * 109.46910 * 59.46498 * 7 6 5 40 40 H 1.08994 * 109.46849 * 80.75308 * 8 5 4 41 41 H 1.08991 * 109.47703 * 320.74870 * 8 5 4 42 42 H 0.96696 * 114.00229 * 299.99073 * 11 9 8 43 43 H 1.08998 * 109.46770 * 64.99519 * 12 9 8 44 44 H 1.08999 * 109.46740 * 305.00506 * 12 9 8 45 45 H 1.07999 * 119.90782 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.09292 * 180.30080 * 16 15 14 47 47 H 0.97004 * 120.00422 * 180.02562 * 21 20 18 48 48 H 1.08002 * 120.09807 * 180.02562 * 26 17 16 49 49 H 1.07995 * 119.91015 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4132 -1.6680 -1.3804 6 6 1.2116 -1.9968 -2.1589 7 6 0.5099 -3.2017 -1.5291 8 6 3.3764 -2.7768 -1.4051 9 6 4.1010 -2.7931 -2.7526 10 1 4.5347 -1.8114 -2.9436 11 8 3.1713 -3.1131 -3.7895 12 6 5.2122 -3.8443 -2.7215 13 8 5.9632 -3.7797 -3.9355 14 6 6.9932 -4.6525 -4.0698 15 6 7.7641 -4.6409 -5.2302 16 6 8.8051 -5.5116 -5.3708 17 6 9.0958 -6.4275 -4.3413 18 6 10.1718 -7.3318 -4.4785 19 1 10.1283 -8.2994 -4.0008 20 6 11.2942 -6.9741 -5.2328 21 7 11.4670 -5.7295 -5.5989 22 14 12.5461 -8.2728 -5.7179 23 1 12.1228 -9.5922 -5.1840 24 1 12.6377 -8.3436 -7.1984 25 1 13.8735 -7.9148 -5.1565 26 6 8.3076 -6.4369 -3.1743 27 6 7.2701 -5.5596 -3.0494 28 1 -0.5400 -0.9313 0.0861 29 1 -0.5400 0.9314 -0.0861 30 1 2.2451 1.6198 -1.0276 31 1 1.4744 2.0647 0.5138 32 1 3.0159 1.1747 0.5138 33 1 1.4384 -2.0857 0.4331 34 1 2.9741 -1.1991 0.5891 35 1 0.5349 -1.1424 -2.1610 36 1 1.4968 -2.2370 -3.1832 37 1 -0.3869 -3.4398 -2.1011 38 1 1.1833 -4.0587 -1.5357 39 1 0.2333 -2.9649 -0.5017 40 1 2.8483 -3.7199 -1.2653 41 1 4.1030 -2.6449 -0.6035 42 1 2.7458 -3.9750 -3.6841 43 1 4.7715 -4.8359 -2.6191 44 1 5.8718 -3.6508 -1.8756 45 1 7.5401 -3.9376 -6.0186 46 1 9.4048 -5.4981 -6.2689 47 1 12.2452 -5.4814 -6.1224 48 1 8.5242 -7.1360 -2.3800 49 1 6.6649 -5.5651 -2.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060943200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:39 Heat of formation + Delta-G solvation = -47.864837 kcal Electronic energy + Delta-G solvation = -26341.830968 eV Core-core repulsion = 22655.524194 eV Total energy + Delta-G solvation = -3686.306774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.61610 -38.70533 -37.10601 -36.02261 -34.61586 -33.26657 -31.46941 -30.06638 -29.46028 -28.94086 -27.57169 -26.57605 -25.24108 -24.51867 -22.53331 -20.96123 -20.60477 -20.50133 -18.55849 -17.33848 -17.10574 -16.76342 -16.40340 -15.85649 -15.61023 -15.23366 -15.02409 -14.50811 -14.24147 -13.92199 -13.80691 -13.72493 -13.64339 -13.23566 -12.97526 -12.73619 -12.26464 -12.21549 -12.15380 -11.98827 -11.85598 -11.77526 -11.64906 -11.42838 -11.30483 -11.17341 -11.00901 -10.88274 -10.74142 -10.64955 -9.93424 -9.78875 -9.76737 -9.37973 -9.31261 -9.07013 -8.43323 -7.65267 -6.96186 -6.66931 -4.26423 1.87736 2.78261 2.93584 3.10619 3.15704 3.19766 3.55690 3.98353 4.12275 4.40715 4.54142 4.59450 4.66403 4.78670 4.93957 4.98570 5.08283 5.12399 5.19645 5.23492 5.29050 5.36139 5.37878 5.39690 5.48651 5.61413 5.62096 5.65393 5.75681 5.76234 5.82162 6.04243 6.05463 6.18048 6.22660 6.31023 6.54361 6.71625 6.83250 6.89324 6.97021 7.10946 7.20589 7.44433 7.56298 7.64018 7.77277 8.02145 8.20433 8.45225 8.66171 8.92252 8.98937 10.29374 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.002000 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.369760 B =13996.558545 C =14139.199030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.114 4.114 4 C 0.079 3.921 5 N -0.521 5.521 6 C 0.031 3.969 7 C -0.194 4.194 8 C 0.021 3.979 9 C 0.119 3.881 10 H 0.114 0.886 11 O -0.545 6.545 12 C 0.039 3.961 13 O -0.316 6.316 14 C -0.001 4.001 15 C -0.122 4.122 16 C -0.124 4.124 17 C 0.088 3.912 18 C -0.467 4.467 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.807 5.807 22 Si 0.908 3.092 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.276 1.276 26 C -0.192 4.192 27 C -0.172 4.172 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.367 0.633 43 H 0.050 0.950 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.123 0.877 47 H 0.278 0.722 48 H 0.095 0.905 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.411 8.056 9.676 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.107 4.107 3 C -0.171 4.171 4 C -0.048 4.048 5 N -0.243 5.243 6 C -0.096 4.096 7 C -0.252 4.252 8 C -0.107 4.107 9 C 0.059 3.941 10 H 0.131 0.869 11 O -0.349 6.349 12 C -0.038 4.038 13 O -0.232 6.232 14 C -0.044 4.044 15 C -0.141 4.141 16 C -0.143 4.143 17 C 0.086 3.914 18 C -0.498 4.498 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.434 5.434 22 Si 0.733 3.267 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.201 1.201 26 C -0.212 4.212 27 C -0.191 4.191 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.214 0.786 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.141 0.859 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.865 9.340 8.986 22.071 hybrid contribution 0.163 -1.951 0.803 2.116 sum -17.702 7.389 9.789 21.536 Atomic orbital electron populations 1.23683 0.95301 1.01766 1.02935 1.21624 0.94994 0.95642 0.98451 1.20799 0.99844 0.93995 1.02469 1.21266 0.99395 0.93911 0.90237 1.62052 1.13039 1.37736 1.11513 1.22565 0.90759 0.96589 0.99706 1.22448 1.01372 1.00015 1.01409 1.22789 0.95797 0.93414 0.98686 1.21916 0.86965 0.99239 0.85970 0.86861 1.86627 1.58766 1.40004 1.49519 1.23105 0.93718 0.98580 0.88430 1.85896 1.43151 1.56919 1.37212 1.18650 0.92797 0.95502 0.97490 1.19860 0.97152 1.01558 0.95563 1.20943 0.95993 0.97707 0.99693 1.17606 0.91768 0.92280 0.89795 1.19448 1.00297 1.01888 1.28157 0.90629 1.25840 0.98867 0.95628 0.93920 1.69813 1.27298 1.17028 1.29289 0.86267 0.79865 0.81612 0.78947 1.18603 1.19839 1.20137 1.20626 0.99982 1.02469 0.98117 1.20405 1.01213 0.99800 0.97712 0.88810 0.88433 0.91052 0.92306 0.91852 0.93809 0.90425 0.90791 0.87579 0.91989 0.92544 0.92854 0.93342 0.89873 0.78641 0.93154 0.92405 0.88346 0.85923 0.91082 0.88712 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 12.48 29.02 0.36 -1.13 16 2 C -0.11 -0.88 5.01 -101.07 -0.51 -1.39 16 3 C -0.11 -0.87 10.03 36.01 0.36 -0.51 16 4 C 0.08 0.67 4.94 -4.98 -0.02 0.65 16 5 N -0.52 -5.01 4.61 -236.08 -1.09 -6.10 16 6 C 0.03 0.28 5.54 -3.83 -0.02 0.26 16 7 C -0.19 -1.49 9.30 37.16 0.35 -1.14 16 8 C 0.02 0.21 4.68 -3.82 -0.02 0.19 16 9 C 0.12 1.47 3.47 -26.73 -0.09 1.38 16 10 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 11 O -0.54 -6.93 10.47 -40.08 -0.42 -7.35 16 12 C 0.04 0.59 4.36 37.16 0.16 0.75 16 13 O -0.32 -6.45 10.09 -23.57 -0.24 -6.69 16 14 C 0.00 -0.03 6.71 -38.78 -0.26 -0.29 16 15 C -0.12 -2.99 9.92 -39.83 -0.40 -3.39 16 16 C -0.12 -3.26 8.59 -39.25 -0.34 -3.60 16 17 C 0.09 2.35 5.52 -106.80 -0.59 1.76 16 18 C -0.47 -12.48 9.03 -37.83 -0.34 -12.82 16 19 H 0.08 1.94 7.88 -52.49 -0.41 1.53 16 20 C 0.07 1.86 5.20 -17.34 -0.09 1.77 16 21 N -0.81 -21.22 11.06 55.54 0.61 -20.61 16 22 Si 0.91 18.93 29.58 -169.99 -5.03 13.91 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 26 C -0.19 -4.72 9.74 -39.25 -0.38 -5.10 16 27 C -0.17 -3.87 8.96 -39.83 -0.36 -4.22 16 28 H 0.09 0.67 7.42 -52.49 -0.39 0.28 16 29 H 0.10 0.66 8.05 -52.49 -0.42 0.23 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.38 8.06 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.04 0.36 5.79 -51.92 -0.30 0.06 16 34 H 0.08 0.64 7.73 -51.93 -0.40 0.23 16 35 H 0.07 0.69 6.38 -51.93 -0.33 0.36 16 36 H 0.11 1.10 5.39 -51.93 -0.28 0.82 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.43 6.18 -51.93 -0.32 0.11 16 39 H 0.05 0.40 5.70 -51.93 -0.30 0.11 16 40 H 0.05 0.42 5.74 -51.93 -0.30 0.13 16 41 H 0.08 0.75 7.69 -51.93 -0.40 0.35 16 42 H 0.37 3.54 9.05 45.56 0.41 3.95 16 43 H 0.05 0.71 7.63 -51.93 -0.40 0.31 16 44 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 46 H 0.12 3.30 6.42 -52.49 -0.34 2.96 16 47 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 48 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 49 H 0.09 1.77 6.27 -52.49 -0.33 1.45 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -29.23 386.58 -9.51 -38.73 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.99 Total: 9.11 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -2.19 Total: -26.83 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: -0.47 Total: -26.71 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.66 Total: -14.04 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.23 -9.51 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060943200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.133 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds