Wall clock time and date at job start Tue Mar 31 2020 12:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 119.99757 * 2 1 4 4 C 1.50696 * 120.00372 * 180.02562 * 2 1 3 5 5 N 1.46901 * 109.47179 * 95.01062 * 4 2 1 6 6 C 1.46897 * 111.00299 * 292.33024 * 5 4 2 7 7 C 1.52996 * 109.46897 * 298.55430 * 6 5 4 8 8 C 1.46899 * 110.99792 * 168.36999 * 5 4 2 9 9 C 1.53003 * 109.47271 * 200.74712 * 8 5 4 10 10 H 1.09006 * 109.46529 * 53.63876 * 9 8 5 11 11 O 1.42903 * 109.46968 * 293.64287 * 9 8 5 12 12 C 1.52997 * 109.47631 * 173.63767 * 9 8 5 13 13 O 1.42893 * 109.47388 * 185.00561 * 12 9 8 14 14 C 1.35675 * 116.99896 * 180.02562 * 13 12 9 15 15 C 1.39315 * 119.81559 * 179.97438 * 14 13 12 16 16 C 1.36439 * 120.18196 * 179.72420 * 15 14 13 17 17 C 1.40831 * 119.81245 * 0.27663 * 16 15 14 18 18 C 1.41226 * 120.17792 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99919 * 210.29936 * 18 17 16 20 20 C 1.39883 * 119.99878 * 30.31006 * 18 17 16 21 21 N 1.30877 * 120.00188 * 12.89131 * 20 18 17 22 22 Si 1.86798 * 119.99781 * 192.89999 * 20 18 17 23 23 H 1.48498 * 109.47172 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47327 * 119.99792 * 22 20 18 25 25 H 1.48506 * 109.46863 * 239.99446 * 22 20 18 26 26 C 1.40828 * 119.64507 * 0.02562 * 17 16 15 27 27 C 1.36438 * 119.80957 * 359.97438 * 26 17 16 28 28 H 1.07993 * 120.00022 * 185.28328 * 1 2 3 29 29 H 1.08002 * 119.99966 * 5.27984 * 1 2 3 30 30 H 1.08994 * 109.47334 * 269.99818 * 3 2 1 31 31 H 1.08993 * 109.47122 * 30.00337 * 3 2 1 32 32 H 1.09001 * 109.46451 * 150.00190 * 3 2 1 33 33 H 1.09009 * 109.46691 * 335.01718 * 4 2 1 34 34 H 1.08993 * 109.47473 * 215.01491 * 4 2 1 35 35 H 1.08998 * 109.47387 * 58.55722 * 6 5 4 36 36 H 1.09001 * 109.47118 * 178.55678 * 6 5 4 37 37 H 1.09005 * 109.47137 * 179.45652 * 7 6 5 38 38 H 1.08991 * 109.47541 * 299.45985 * 7 6 5 39 39 H 1.09003 * 109.46910 * 59.46498 * 7 6 5 40 40 H 1.08994 * 109.46849 * 80.75308 * 8 5 4 41 41 H 1.08991 * 109.47703 * 320.74870 * 8 5 4 42 42 H 0.96696 * 114.00229 * 299.99073 * 11 9 8 43 43 H 1.08998 * 109.46770 * 64.99519 * 12 9 8 44 44 H 1.08999 * 109.46740 * 305.00506 * 12 9 8 45 45 H 1.07999 * 119.90782 * 0.02562 * 15 14 13 46 46 H 1.08000 * 120.09292 * 180.30080 * 16 15 14 47 47 H 0.97004 * 120.00422 * 180.02562 * 21 20 18 48 48 H 1.08002 * 120.09807 * 180.02562 * 26 17 16 49 49 H 1.07995 * 119.91015 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4132 -1.6680 -1.3804 6 6 1.2116 -1.9968 -2.1589 7 6 0.5099 -3.2017 -1.5291 8 6 3.3764 -2.7768 -1.4051 9 6 4.1010 -2.7931 -2.7526 10 1 4.5347 -1.8114 -2.9436 11 8 3.1713 -3.1131 -3.7895 12 6 5.2122 -3.8443 -2.7215 13 8 5.9632 -3.7797 -3.9355 14 6 6.9932 -4.6525 -4.0698 15 6 7.7641 -4.6409 -5.2302 16 6 8.8051 -5.5116 -5.3708 17 6 9.0958 -6.4275 -4.3413 18 6 10.1718 -7.3318 -4.4785 19 1 10.1283 -8.2994 -4.0008 20 6 11.2942 -6.9741 -5.2328 21 7 11.4670 -5.7295 -5.5989 22 14 12.5461 -8.2728 -5.7179 23 1 12.1228 -9.5922 -5.1840 24 1 12.6377 -8.3436 -7.1984 25 1 13.8735 -7.9148 -5.1565 26 6 8.3076 -6.4369 -3.1743 27 6 7.2701 -5.5596 -3.0494 28 1 -0.5400 -0.9313 0.0861 29 1 -0.5400 0.9314 -0.0861 30 1 2.2451 1.6198 -1.0276 31 1 1.4744 2.0647 0.5138 32 1 3.0159 1.1747 0.5138 33 1 1.4384 -2.0857 0.4331 34 1 2.9741 -1.1991 0.5891 35 1 0.5349 -1.1424 -2.1610 36 1 1.4968 -2.2370 -3.1832 37 1 -0.3869 -3.4398 -2.1011 38 1 1.1833 -4.0587 -1.5357 39 1 0.2333 -2.9649 -0.5017 40 1 2.8483 -3.7199 -1.2653 41 1 4.1030 -2.6449 -0.6035 42 1 2.7458 -3.9750 -3.6841 43 1 4.7715 -4.8359 -2.6191 44 1 5.8718 -3.6508 -1.8756 45 1 7.5401 -3.9376 -6.0186 46 1 9.4048 -5.4981 -6.2689 47 1 12.2452 -5.4814 -6.1224 48 1 8.5242 -7.1360 -2.3800 49 1 6.6649 -5.5651 -2.1550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060943200.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:38 Heat of formation + Delta-G solvation = -65.375369 kcal Electronic energy + Delta-G solvation = -26342.590282 eV Core-core repulsion = 22655.524194 eV Total energy + Delta-G solvation = -3687.066087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.77551 -39.99843 -38.41642 -37.38698 -35.32229 -35.12564 -32.45167 -31.62345 -30.95918 -30.37537 -28.21874 -27.53774 -26.55795 -25.76811 -23.71855 -22.59967 -22.23882 -21.48954 -19.24684 -19.16134 -18.67076 -17.68483 -17.55490 -17.02180 -16.66902 -16.53231 -15.99929 -15.73210 -15.55880 -15.40039 -14.93108 -14.73832 -14.43020 -14.36029 -14.06880 -13.97119 -13.80763 -13.62353 -13.52247 -13.07592 -12.85805 -12.81138 -12.62104 -12.59734 -12.54542 -12.38648 -12.29372 -12.00600 -11.89301 -11.69163 -11.58637 -11.55316 -11.17916 -10.92566 -10.69352 -9.98237 -9.56720 -9.13130 -8.85574 -8.55406 -6.24673 0.94704 1.01707 1.27067 1.40291 1.50375 1.55049 2.24358 2.41943 2.76009 3.19671 3.46850 3.68164 3.88689 3.95792 3.99753 4.03907 4.07759 4.23397 4.28690 4.32423 4.36971 4.42239 4.47752 4.57356 4.59570 4.62014 4.71033 4.79738 4.86347 4.89114 5.03158 5.03854 5.08198 5.12514 5.17776 5.20085 5.20912 5.29977 5.46467 5.57144 5.65102 5.71702 5.87098 5.93617 6.07034 6.12821 6.21239 6.26354 6.57063 6.78756 6.83741 6.97097 7.09815 8.42824 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.002000 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.369760 B =13996.558545 C =14139.199030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.081 3.919 5 N -0.533 5.533 6 C 0.035 3.965 7 C -0.187 4.187 8 C 0.031 3.969 9 C 0.130 3.870 10 H 0.094 0.906 11 O -0.559 6.559 12 C 0.031 3.969 13 O -0.330 6.330 14 C 0.010 3.990 15 C -0.139 4.139 16 C -0.142 4.142 17 C 0.053 3.947 18 C -0.501 4.501 19 H 0.076 0.924 20 C 0.030 3.970 21 N -0.842 5.842 22 Si 0.983 3.017 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.200 4.200 27 C -0.168 4.168 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.381 0.619 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.285 0.715 48 H 0.107 0.893 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 7.611 11.163 23.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.122 4.122 3 C -0.170 4.170 4 C -0.046 4.046 5 N -0.256 5.256 6 C -0.093 4.093 7 C -0.246 4.246 8 C -0.098 4.098 9 C 0.070 3.930 10 H 0.112 0.888 11 O -0.366 6.366 12 C -0.046 4.046 13 O -0.246 6.246 14 C -0.034 4.034 15 C -0.158 4.158 16 C -0.162 4.162 17 C 0.051 3.949 18 C -0.532 4.532 19 H 0.094 0.906 20 C -0.183 4.183 21 N -0.470 5.470 22 Si 0.805 3.195 23 H -0.181 1.181 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.219 4.219 27 C -0.187 4.187 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.229 0.771 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.095 0.905 48 H 0.126 0.874 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.128 8.902 10.490 23.562 hybrid contribution 0.347 -1.682 0.398 1.763 sum -18.782 7.220 10.888 22.878 Atomic orbital electron populations 1.23807 0.95145 1.02347 1.01781 1.21712 0.95359 0.95729 0.99449 1.20787 1.00072 0.94185 1.01931 1.21267 0.99683 0.94180 0.89459 1.61980 1.13347 1.37919 1.12401 1.22466 0.90640 0.97072 0.99082 1.22375 1.01458 0.99236 1.01485 1.22660 0.95954 0.94228 0.96918 1.21771 0.86426 0.97301 0.87496 0.88835 1.86607 1.58788 1.41177 1.49986 1.23498 0.94007 1.00483 0.86567 1.85892 1.42549 1.56076 1.40100 1.18714 0.92701 0.95247 0.96743 1.20020 0.97279 1.01602 0.96852 1.20843 0.96889 0.99001 0.99440 1.17961 0.92892 0.93144 0.90903 1.19694 1.01321 1.02190 1.29980 0.90633 1.26715 1.00595 0.97685 0.93286 1.69881 1.28319 1.18845 1.29924 0.85140 0.77098 0.78619 0.78686 1.18128 1.19147 1.19324 1.20881 1.00212 1.03102 0.97743 1.20716 1.00723 0.98474 0.98778 0.88358 0.87748 0.92094 0.91319 0.91838 0.93205 0.90194 0.91259 0.88922 0.91402 0.92325 0.92536 0.91883 0.88960 0.77051 0.91487 0.91409 0.87551 0.87696 0.90452 0.87441 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 12.48 67.78 0.85 -1.70 16 2 C -0.12 -1.82 5.01 -16.49 -0.08 -1.90 16 3 C -0.11 -1.60 10.03 71.24 0.71 -0.89 16 4 C 0.08 1.21 4.94 85.56 0.42 1.63 16 5 N -0.53 -9.30 4.61 -900.83 -4.15 -13.46 16 6 C 0.03 0.58 5.54 86.30 0.48 1.06 16 7 C -0.19 -2.42 9.30 71.98 0.67 -1.75 16 8 C 0.03 0.51 4.68 86.30 0.40 0.92 16 9 C 0.13 2.99 3.47 30.59 0.11 3.10 16 10 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 11 O -0.56 -13.37 10.47 -144.35 -1.51 -14.88 16 12 C 0.03 0.85 4.36 71.98 0.31 1.16 16 13 O -0.33 -13.02 10.09 -85.29 -0.86 -13.88 16 14 C 0.01 0.45 6.71 22.79 0.15 0.60 16 15 C -0.14 -6.89 9.92 22.11 0.22 -6.67 16 16 C -0.14 -7.72 8.59 22.48 0.19 -7.53 16 17 C 0.05 2.90 5.52 -21.28 -0.12 2.79 16 18 C -0.50 -27.37 9.03 23.40 0.21 -27.16 16 19 H 0.08 3.96 7.88 -2.91 -0.02 3.93 16 20 C 0.03 1.52 5.20 85.23 0.44 1.97 16 21 N -0.84 -45.41 11.06 21.82 0.24 -45.17 16 22 Si 0.98 39.11 29.58 68.60 2.03 41.14 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 26 C -0.20 -9.72 9.74 22.48 0.22 -9.50 16 27 C -0.17 -7.26 8.96 22.11 0.20 -7.06 16 28 H 0.10 1.19 7.42 -2.91 -0.02 1.17 16 29 H 0.10 1.21 8.05 -2.91 -0.02 1.19 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.81 8.06 -2.39 -0.02 0.79 16 32 H 0.06 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.05 0.69 5.79 -2.38 -0.01 0.67 16 34 H 0.08 1.15 7.73 -2.39 -0.02 1.13 16 35 H 0.07 1.21 6.38 -2.39 -0.02 1.19 16 36 H 0.09 1.81 5.39 -2.39 -0.01 1.79 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.73 6.18 -2.39 -0.01 0.72 16 39 H 0.06 0.70 5.70 -2.39 -0.01 0.69 16 40 H 0.06 0.90 5.74 -2.39 -0.01 0.88 16 41 H 0.09 1.40 7.69 -2.39 -0.02 1.38 16 42 H 0.38 6.55 9.05 -74.06 -0.67 5.88 16 43 H 0.07 1.65 7.63 -2.39 -0.02 1.64 16 44 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 45 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 46 H 0.11 5.94 6.42 -2.91 -0.02 5.93 16 47 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 48 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 49 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 Total: -1.00 -63.62 386.58 1.41 -62.20 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.28 Total: 34.99 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 5.39 Total: -50.94 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -3.91 Total: -58.63 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -2.37 Total: -28.76 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -63.62 1.41 -62.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060943200.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.172 kcal (2) G-P(sol) polarization free energy of solvation -63.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds