Wall clock time and date at job start Tue Mar 31 2020 13:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46726 * 2 1 4 4 C 1.37089 * 119.99893 * 264.76954 * 3 2 1 5 5 H 1.08004 * 119.99882 * 138.85755 * 4 3 2 6 6 C 1.38945 * 120.00733 * 318.85209 * 4 3 2 7 7 N 1.31408 * 119.99760 * 341.83442 * 6 4 3 8 8 Si 1.86801 * 120.00415 * 161.82710 * 6 4 3 9 9 H 1.48505 * 109.46603 * 90.00390 * 8 6 4 10 10 H 1.48494 * 109.47340 * 210.00236 * 8 6 4 11 11 H 1.48501 * 109.47025 * 330.00889 * 8 6 4 12 12 C 1.34773 * 119.99378 * 84.77664 * 3 2 1 13 13 O 1.21291 * 119.99614 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00495 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47269 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47167 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47008 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47008 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47134 * 179.97438 * 18 17 16 20 20 C 1.38267 * 119.94743 * 269.72639 * 19 18 17 21 21 C 1.38148 * 120.05576 * 179.72573 * 20 19 18 22 22 C 1.38726 * 119.94343 * 0.56970 * 21 20 19 23 23 O 1.35901 * 120.05652 * 179.68452 * 22 21 20 24 24 C 1.42903 * 116.99525 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.89193 * 359.70587 * 22 21 20 26 26 C 1.38146 * 119.93933 * 359.97438 * 25 22 21 27 27 H 1.08996 * 109.47729 * 60.00051 * 1 2 3 28 28 H 1.09009 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47048 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.46967 * 240.00979 * 2 1 3 31 31 H 1.08994 * 109.47469 * 120.00413 * 2 1 3 32 32 H 0.97005 * 120.00460 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46777 * 60.00432 * 14 12 3 34 34 H 1.08997 * 109.47349 * 300.00798 * 14 12 3 35 35 H 1.09006 * 109.46824 * 60.00514 * 15 14 12 36 36 H 1.08997 * 109.47631 * 300.00680 * 15 14 12 37 37 H 1.08992 * 109.46968 * 60.00223 * 16 15 14 38 38 H 1.09002 * 109.46670 * 300.00144 * 16 15 14 39 39 H 1.09000 * 109.47642 * 60.00318 * 17 16 15 40 40 H 1.08995 * 109.47382 * 299.99492 * 17 16 15 41 41 H 1.08998 * 109.47393 * 59.99665 * 18 17 16 42 42 H 1.09003 * 109.47180 * 299.99656 * 18 17 16 43 43 H 1.07995 * 119.96911 * 359.97438 * 20 19 18 44 44 H 1.07999 * 120.02169 * 180.25196 * 21 20 19 45 45 H 1.08998 * 109.47412 * 300.00113 * 24 23 22 46 46 H 1.08996 * 109.46937 * 60.00673 * 24 23 22 47 47 H 1.09002 * 109.46720 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.02917 * 179.97438 * 25 22 21 49 49 H 1.08004 * 119.96916 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2844 -2.1605 7 7 3.6791 0.1821 -1.8452 8 14 3.0497 1.9007 -3.9239 9 1 4.2053 2.8123 -4.1213 10 1 3.1658 0.7465 -4.8509 11 1 1.7882 2.6335 -4.2012 12 6 2.1426 2.0519 1.1624 13 8 2.5473 3.1954 1.1625 14 6 1.7789 1.3813 2.4620 15 6 2.0112 2.3537 3.6202 16 6 1.6425 1.6725 4.9397 17 6 1.8741 2.6451 6.0978 18 6 1.5049 1.9641 7.4173 19 6 1.7336 2.9219 8.5580 20 6 2.9612 2.9581 9.1933 21 6 3.1751 3.8392 10.2356 22 6 2.1533 4.6798 10.6525 23 8 2.3593 5.5429 11.6818 24 6 3.6530 5.5318 12.2887 25 6 0.9207 4.6376 10.0173 26 6 0.7139 3.7594 8.9711 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1593 -0.3118 -2.5282 33 1 2.4005 0.4966 2.6007 34 1 0.7295 1.0878 2.4382 35 1 1.3899 3.2386 3.4817 36 1 3.0607 2.6467 3.6438 37 1 2.2640 0.7879 5.0779 38 1 0.5929 1.3793 4.9163 39 1 1.2524 3.5296 5.9594 40 1 2.9235 2.9387 6.1214 41 1 2.1262 1.0794 7.5559 42 1 0.4553 1.6709 7.3935 43 1 3.7546 2.2998 8.8717 44 1 4.1355 3.8698 10.7288 45 1 3.8563 4.5402 12.6929 46 1 4.4067 5.7814 11.5420 47 1 3.6828 6.2659 13.0939 48 1 0.1235 5.2907 10.3403 49 1 -0.2456 3.7258 8.4765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066352633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:39 Heat of formation + Delta-G solvation = -75.151580 kcal Electronic energy + Delta-G solvation = -25507.413587 eV Core-core repulsion = 21819.923572 eV Total energy + Delta-G solvation = -3687.490016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39732 -38.58715 -38.11379 -35.75565 -34.81731 -32.75364 -31.91101 -31.31613 -29.73189 -29.35399 -27.87880 -26.33363 -24.67192 -22.97653 -22.72199 -22.05967 -20.90022 -20.76374 -18.54723 -18.42439 -16.69503 -16.59564 -16.04966 -15.84137 -15.60265 -15.48594 -14.92104 -14.55860 -14.35446 -14.17829 -13.89993 -13.63646 -13.53533 -13.07594 -12.83222 -12.71879 -12.64304 -12.32868 -12.18509 -11.83212 -11.81309 -11.53433 -11.35191 -11.20319 -11.05374 -11.02789 -10.94263 -10.68343 -10.63254 -10.52010 -10.35825 -10.29262 -10.14809 -9.97773 -9.23317 -8.86424 -8.31488 -8.25075 -7.34461 -6.26375 -3.94230 1.10915 1.19130 2.97113 3.20886 3.28541 3.33743 3.51520 4.02973 4.21572 4.50038 4.59588 4.63477 4.74167 4.78039 4.89709 4.97661 5.07128 5.08554 5.14326 5.20357 5.22807 5.31417 5.43053 5.50396 5.68441 5.70198 5.76582 5.85292 5.89658 5.93682 6.03934 6.05007 6.12057 6.14814 6.19955 6.24683 6.29096 6.36083 6.45818 6.49170 6.53809 6.58145 6.71844 6.83011 6.92427 7.10815 7.26827 7.63583 8.37168 8.60215 9.27914 9.48666 10.12272 10.78970 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.001753 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.714224 B =15968.617325 C =16373.240899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.446 5.446 4 C -0.307 4.307 5 H 0.086 0.914 6 C 0.037 3.963 7 N -0.874 5.874 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.461 3.539 13 O -0.583 6.583 14 C -0.135 4.135 15 C -0.099 4.099 16 C -0.119 4.119 17 C -0.113 4.113 18 C -0.078 4.078 19 C -0.112 4.112 20 C -0.078 4.078 21 C -0.206 4.206 22 C 0.116 3.884 23 O -0.321 6.321 24 C 0.028 3.972 25 C -0.150 4.150 26 C -0.078 4.078 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.098 0.902 48 H 0.129 0.871 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 1.164 24.229 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.165 5.165 4 C -0.435 4.435 5 H 0.103 0.897 6 C -0.167 4.167 7 N -0.512 5.512 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.250 3.750 13 O -0.467 6.467 14 C -0.175 4.175 15 C -0.137 4.137 16 C -0.157 4.157 17 C -0.151 4.151 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.096 4.096 21 C -0.224 4.224 22 C 0.072 3.928 23 O -0.234 6.234 24 C -0.067 4.067 25 C -0.168 4.168 26 C -0.096 4.096 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.117 0.883 48 H 0.147 0.853 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.784 1.715 24.194 24.548 hybrid contribution 0.413 -0.046 -0.864 0.959 sum -3.371 1.669 23.330 23.632 Atomic orbital electron populations 1.22228 0.98366 1.00240 1.01501 1.21425 0.91502 0.85758 1.03328 1.43472 1.56386 1.11718 1.04959 1.19348 1.34605 0.98422 0.91163 0.89658 1.25410 0.94172 0.96601 1.00506 1.69929 1.29730 1.17654 1.33888 0.86103 0.78924 0.78289 0.82369 1.20342 1.20886 1.19457 1.20476 0.81617 0.87845 0.85074 1.90503 1.50175 1.18962 1.87045 1.21652 1.01970 0.99521 0.94376 1.21274 1.02467 0.98076 0.91922 1.21644 1.01300 0.98368 0.94346 1.21588 1.01955 0.98740 0.92786 1.20608 1.02206 0.96588 0.92099 1.19910 0.93916 0.99137 0.98304 1.20874 0.96731 0.97502 0.94490 1.21220 0.99146 1.00309 1.01756 1.19034 0.94505 0.90536 0.88765 1.86058 1.34272 1.57313 1.45782 1.23042 0.83289 1.02589 0.97825 1.20425 0.95613 1.02411 0.98372 1.20901 0.99062 0.94326 0.95334 0.92514 0.93200 0.93824 0.88038 0.93379 0.92395 0.90460 0.90680 0.91758 0.91658 0.92145 0.92203 0.91835 0.91866 0.91115 0.91054 0.85730 0.85623 0.92709 0.92613 0.88311 0.85333 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.15 37.16 0.38 -2.59 16 2 C 0.10 2.28 5.41 -4.04 -0.02 2.25 16 3 N -0.45 -11.49 2.50 -114.81 -0.29 -11.78 16 4 C -0.31 -8.70 8.84 -14.94 -0.13 -8.83 16 5 H 0.09 2.53 7.82 -52.48 -0.41 2.12 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.91 16 7 N -0.87 -24.03 11.61 55.50 0.64 -23.39 16 8 Si 0.92 20.97 29.59 -169.99 -5.03 15.94 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.46 11.51 7.59 -10.99 -0.08 11.42 16 13 O -0.58 -16.70 15.89 5.55 0.09 -16.61 16 14 C -0.13 -2.50 4.31 -27.88 -0.12 -2.62 16 15 C -0.10 -1.64 4.50 -26.73 -0.12 -1.76 16 16 C -0.12 -1.45 5.21 -26.73 -0.14 -1.59 16 17 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 18 C -0.08 -0.72 5.34 -27.88 -0.15 -0.87 16 19 C -0.11 -1.11 5.13 -104.60 -0.54 -1.65 16 20 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 21 C -0.21 -1.93 9.04 -39.43 -0.36 -2.28 16 22 C 0.12 1.20 6.69 -39.22 -0.26 0.93 16 23 O -0.32 -3.11 10.50 -19.43 -0.20 -3.31 16 24 C 0.03 0.16 9.81 101.05 0.99 1.15 16 25 C -0.15 -1.49 9.99 -39.43 -0.39 -1.88 16 26 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.04 0.73 6.60 -51.93 -0.34 0.39 16 30 H 0.10 2.45 5.76 -51.93 -0.30 2.15 16 31 H 0.05 0.96 6.66 -51.93 -0.35 0.61 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.08 1.35 7.41 -51.93 -0.38 0.97 16 34 H 0.07 1.24 6.54 -51.93 -0.34 0.90 16 35 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.13 0.92 6.30 -52.49 -0.33 0.58 16 45 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 46 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 47 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -32.95 397.21 -9.04 -41.99 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.29 Total: 2.21 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.94 Total: -11.04 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.36 Total: -35.17 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.12 Total: -19.92 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.95 -9.04 -41.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066352633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.164 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds