Wall clock time and date at job start Tue Mar 31 2020 13:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46726 * 2 1 4 4 C 1.37089 * 119.99893 * 264.76954 * 3 2 1 5 5 H 1.08004 * 119.99882 * 138.85755 * 4 3 2 6 6 C 1.38945 * 120.00733 * 318.85209 * 4 3 2 7 7 N 1.31408 * 119.99760 * 341.83442 * 6 4 3 8 8 Si 1.86801 * 120.00415 * 161.82710 * 6 4 3 9 9 H 1.48505 * 109.46603 * 90.00390 * 8 6 4 10 10 H 1.48494 * 109.47340 * 210.00236 * 8 6 4 11 11 H 1.48501 * 109.47025 * 330.00889 * 8 6 4 12 12 C 1.34773 * 119.99378 * 84.77664 * 3 2 1 13 13 O 1.21291 * 119.99614 * 179.97438 * 12 3 2 14 14 C 1.50697 * 120.00495 * 359.97438 * 12 3 2 15 15 C 1.52999 * 109.47269 * 179.97438 * 14 12 3 16 16 C 1.53005 * 109.47167 * 180.02562 * 15 14 12 17 17 C 1.52992 * 109.47008 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47008 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47134 * 179.97438 * 18 17 16 20 20 C 1.38267 * 119.94743 * 269.72639 * 19 18 17 21 21 C 1.38148 * 120.05576 * 179.72573 * 20 19 18 22 22 C 1.38726 * 119.94343 * 0.56970 * 21 20 19 23 23 O 1.35901 * 120.05652 * 179.68452 * 22 21 20 24 24 C 1.42903 * 116.99525 * 0.02562 * 23 22 21 25 25 C 1.38735 * 119.89193 * 359.70587 * 22 21 20 26 26 C 1.38146 * 119.93933 * 359.97438 * 25 22 21 27 27 H 1.08996 * 109.47729 * 60.00051 * 1 2 3 28 28 H 1.09009 * 109.46698 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47048 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.46967 * 240.00979 * 2 1 3 31 31 H 1.08994 * 109.47469 * 120.00413 * 2 1 3 32 32 H 0.97005 * 120.00460 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.46777 * 60.00432 * 14 12 3 34 34 H 1.08997 * 109.47349 * 300.00798 * 14 12 3 35 35 H 1.09006 * 109.46824 * 60.00514 * 15 14 12 36 36 H 1.08997 * 109.47631 * 300.00680 * 15 14 12 37 37 H 1.08992 * 109.46968 * 60.00223 * 16 15 14 38 38 H 1.09002 * 109.46670 * 300.00144 * 16 15 14 39 39 H 1.09000 * 109.47642 * 60.00318 * 17 16 15 40 40 H 1.08995 * 109.47382 * 299.99492 * 17 16 15 41 41 H 1.08998 * 109.47393 * 59.99665 * 18 17 16 42 42 H 1.09003 * 109.47180 * 299.99656 * 18 17 16 43 43 H 1.07995 * 119.96911 * 359.97438 * 20 19 18 44 44 H 1.07999 * 120.02169 * 180.25196 * 21 20 19 45 45 H 1.08998 * 109.47412 * 300.00113 * 24 23 22 46 46 H 1.08996 * 109.46937 * 60.00673 * 24 23 22 47 47 H 1.09002 * 109.46720 * 179.97438 * 24 23 22 48 48 H 1.08000 * 120.02917 * 179.97438 * 25 22 21 49 49 H 1.08004 * 119.96916 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3488 1.9915 -1.1823 5 1 2.0742 3.0219 -1.3534 6 6 3.0371 1.2844 -2.1605 7 7 3.6791 0.1821 -1.8452 8 14 3.0497 1.9007 -3.9239 9 1 4.2053 2.8123 -4.1213 10 1 3.1658 0.7465 -4.8509 11 1 1.7882 2.6335 -4.2012 12 6 2.1426 2.0519 1.1624 13 8 2.5473 3.1954 1.1625 14 6 1.7789 1.3813 2.4620 15 6 2.0112 2.3537 3.6202 16 6 1.6425 1.6725 4.9397 17 6 1.8741 2.6451 6.0978 18 6 1.5049 1.9641 7.4173 19 6 1.7336 2.9219 8.5580 20 6 2.9612 2.9581 9.1933 21 6 3.1751 3.8392 10.2356 22 6 2.1533 4.6798 10.6525 23 8 2.3593 5.5429 11.6818 24 6 3.6530 5.5318 12.2887 25 6 0.9207 4.6376 10.0173 26 6 0.7139 3.7594 8.9711 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.1593 -0.3118 -2.5282 33 1 2.4005 0.4966 2.6007 34 1 0.7295 1.0878 2.4382 35 1 1.3899 3.2386 3.4817 36 1 3.0607 2.6467 3.6438 37 1 2.2640 0.7879 5.0779 38 1 0.5929 1.3793 4.9163 39 1 1.2524 3.5296 5.9594 40 1 2.9235 2.9387 6.1214 41 1 2.1262 1.0794 7.5559 42 1 0.4553 1.6709 7.3935 43 1 3.7546 2.2998 8.8717 44 1 4.1355 3.8698 10.7288 45 1 3.8563 4.5402 12.6929 46 1 4.4067 5.7814 11.5420 47 1 3.6828 6.2659 13.0939 48 1 0.1235 5.2907 10.3403 49 1 -0.2456 3.7258 8.4765 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066352633.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:38 Heat of formation + Delta-G solvation = -92.336566 kcal Electronic energy + Delta-G solvation = -25508.158784 eV Core-core repulsion = 21819.923572 eV Total energy + Delta-G solvation = -3688.235213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06496 -40.45338 -38.82224 -37.09663 -36.47087 -34.18140 -33.54224 -32.00776 -31.12981 -30.71233 -28.58439 -27.55539 -26.26103 -24.15395 -23.65064 -23.42640 -21.93907 -21.61880 -20.36113 -19.07823 -18.68177 -17.61595 -17.29970 -16.99857 -16.64328 -16.59906 -16.26822 -15.98765 -15.66679 -15.25517 -14.78589 -14.65975 -14.50813 -14.43055 -14.30940 -14.04830 -13.62157 -13.42923 -13.39762 -13.18790 -12.89528 -12.80869 -12.68413 -12.64375 -12.51312 -12.24680 -12.11722 -11.98693 -11.88617 -11.75406 -11.70203 -11.54691 -11.49603 -11.28236 -10.87050 -10.27472 -9.93635 -9.36495 -9.00010 -8.32637 -6.08916 0.40821 0.46739 1.37310 1.39970 1.52773 2.11701 2.31190 2.39830 2.79699 3.02897 3.14360 3.83872 3.86669 3.97013 4.03759 4.09440 4.20867 4.25627 4.33444 4.36549 4.37159 4.42394 4.48585 4.53989 4.64495 4.67016 4.69892 4.73101 4.81269 4.82749 4.92071 4.97544 5.03355 5.07920 5.08988 5.14643 5.19944 5.33425 5.35643 5.41001 5.43486 5.46977 5.48866 5.58346 5.59928 5.77644 5.87241 6.25857 6.46013 6.59732 7.22281 7.52021 8.13669 8.71049 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028370 B = 0.001753 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.714224 B =15968.617325 C =16373.240899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.459 5.459 4 C -0.343 4.343 5 H 0.057 0.943 6 C 0.003 3.997 7 N -0.892 5.892 8 Si 0.980 3.020 9 H -0.280 1.280 10 H -0.266 1.266 11 H -0.267 1.267 12 C 0.442 3.558 13 O -0.635 6.635 14 C -0.121 4.121 15 C -0.094 4.094 16 C -0.107 4.107 17 C -0.109 4.109 18 C -0.069 4.069 19 C -0.125 4.125 20 C -0.087 4.087 21 C -0.212 4.212 22 C 0.102 3.898 23 O -0.339 6.339 24 C 0.019 3.981 25 C -0.165 4.165 26 C -0.084 4.084 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.273 0.727 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.143 0.857 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.118 0.882 48 H 0.135 0.865 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 -0.518 25.095 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.021 4.021 3 N -0.178 5.178 4 C -0.471 4.471 5 H 0.075 0.925 6 C -0.200 4.200 7 N -0.530 5.530 8 Si 0.804 3.196 9 H -0.206 1.206 10 H -0.190 1.190 11 H -0.191 1.191 12 C 0.233 3.767 13 O -0.522 6.522 14 C -0.161 4.161 15 C -0.132 4.132 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.230 4.230 22 C 0.057 3.943 23 O -0.253 6.253 24 C -0.075 4.075 25 C -0.184 4.184 26 C -0.102 4.102 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.121 0.879 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.136 0.864 48 H 0.153 0.847 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.534 -0.008 25.071 25.478 hybrid contribution 0.707 0.508 -1.103 1.405 sum -3.827 0.500 23.968 24.277 Atomic orbital electron populations 1.22114 0.95211 1.02540 1.01332 1.21558 0.94060 0.83462 1.03055 1.43804 1.56295 1.13068 1.04622 1.19316 1.36508 0.98003 0.93310 0.92512 1.26148 0.93209 0.96667 1.03947 1.69990 1.29559 1.18216 1.35241 0.85154 0.78673 0.78180 0.77616 1.20631 1.19008 1.19139 1.21615 0.80667 0.87494 0.86940 1.90457 1.52390 1.21344 1.88047 1.21627 1.03745 0.99646 0.91061 1.21233 1.00693 0.97571 0.93750 1.21552 1.02621 0.98433 0.91836 1.21518 1.01185 0.98450 0.93547 1.20536 1.03163 0.96438 0.90507 1.20075 0.94169 0.99521 0.98715 1.21130 0.97120 0.97751 0.94532 1.21453 0.99778 0.99997 1.01815 1.19267 0.94927 0.90922 0.89147 1.86031 1.36236 1.57311 1.45749 1.23304 0.81963 1.03898 0.98342 1.20659 0.96043 1.02900 0.98796 1.21125 0.99764 0.94070 0.95248 0.94302 0.89573 0.92388 0.90545 0.91309 0.91796 0.88860 0.87877 0.93449 0.94110 0.90808 0.90299 0.92608 0.92976 0.90109 0.89807 0.84472 0.83921 0.91722 0.92146 0.86390 0.84685 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 10.15 71.98 0.73 -4.46 16 2 C 0.10 4.34 5.41 86.38 0.47 4.81 16 3 N -0.46 -23.97 2.50 -635.54 -1.59 -25.56 16 4 C -0.34 -20.01 8.84 84.04 0.74 -19.27 16 5 H 0.06 3.55 7.82 -2.91 -0.02 3.53 16 6 C 0.00 0.14 4.95 84.93 0.42 0.56 16 7 N -0.89 -49.12 11.61 21.66 0.25 -48.87 16 8 Si 0.98 43.29 29.59 68.60 2.03 45.32 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 C 0.44 22.42 7.59 87.66 0.67 23.08 16 13 O -0.63 -37.92 15.89 -3.06 -0.05 -37.97 16 14 C -0.12 -4.30 4.31 29.85 0.13 -4.17 16 15 C -0.09 -3.05 4.50 30.60 0.14 -2.92 16 16 C -0.11 -2.34 5.21 30.59 0.16 -2.18 16 17 C -0.11 -2.24 5.20 30.59 0.16 -2.08 16 18 C -0.07 -1.12 5.34 29.85 0.16 -0.96 16 19 C -0.12 -2.29 5.13 -19.85 -0.10 -2.39 16 20 C -0.09 -1.57 9.69 22.26 0.22 -1.35 16 21 C -0.21 -3.78 9.04 22.37 0.20 -3.58 16 22 C 0.10 2.06 6.69 22.51 0.15 2.21 16 23 O -0.34 -6.42 10.50 -92.44 -0.97 -7.39 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 C -0.17 -3.23 9.99 22.37 0.22 -3.01 16 26 C -0.08 -1.53 9.69 22.25 0.22 -1.32 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 29 H 0.06 1.78 6.60 -2.39 -0.02 1.76 16 30 H 0.08 3.66 5.76 -2.39 -0.01 3.65 16 31 H 0.07 2.59 6.66 -2.39 -0.02 2.58 16 32 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 33 H 0.09 3.04 7.41 -2.38 -0.02 3.02 16 34 H 0.10 3.09 6.54 -2.39 -0.02 3.08 16 35 H 0.05 1.67 8.10 -2.38 -0.02 1.65 16 36 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 42 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.14 1.90 6.30 -2.91 -0.02 1.88 16 45 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 46 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 47 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 49 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -74.27 397.21 6.37 -67.90 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.91 Total: 22.28 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 5.79 Total: -15.71 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.34 Total: -74.43 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.02 Total: -45.36 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -74.27 6.37 -67.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066352633.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.434 kcal (2) G-P(sol) polarization free energy of solvation -74.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds