Wall clock time and date at job start Tue Mar 31 2020 13:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47111 * 2 1 4 4 C 1.37104 * 119.99841 * 264.62479 * 3 2 1 5 5 H 1.07995 * 120.00030 * 191.53530 * 4 3 2 6 6 C 1.38944 * 119.99884 * 11.54216 * 4 3 2 7 7 N 1.31413 * 120.00420 * 23.92736 * 6 4 3 8 8 Si 1.86805 * 119.99912 * 203.93145 * 6 4 3 9 9 H 1.48496 * 109.46899 * 59.99901 * 8 6 4 10 10 H 1.48500 * 109.46925 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99617 * 8 6 4 12 12 C 1.34777 * 120.00428 * 84.62984 * 3 2 1 13 13 O 1.21294 * 119.99611 * 2.56219 * 12 3 2 14 14 C 1.50703 * 120.00282 * 182.56179 * 12 3 2 15 15 H 1.09002 * 109.46676 * 48.94892 * 14 12 3 16 16 C 1.52994 * 109.47195 * 288.95117 * 14 12 3 17 17 O 1.42903 * 109.47128 * 168.94813 * 14 12 3 18 18 C 1.35898 * 116.99840 * 206.05217 * 17 14 12 19 19 C 1.38752 * 120.05648 * 354.57679 * 18 17 14 20 20 C 1.38126 * 119.94325 * 179.74299 * 19 18 17 21 21 C 1.50700 * 119.97327 * 180.24808 * 20 19 18 22 22 C 1.53001 * 109.46642 * 120.25661 * 21 20 19 23 23 C 1.52995 * 109.47212 * 240.25300 * 21 20 19 24 24 C 1.38289 * 120.05470 * 0.50698 * 20 19 18 25 25 C 1.38253 * 120.11106 * 359.76395 * 24 20 19 26 26 C 1.38163 * 120.05346 * 359.97438 * 25 24 20 27 27 C 1.50702 * 120.02798 * 179.97438 * 26 25 24 28 28 H 1.08994 * 109.46914 * 301.18874 * 1 2 3 29 29 H 1.09002 * 109.46719 * 61.18412 * 1 2 3 30 30 H 1.08995 * 109.47330 * 181.18360 * 1 2 3 31 31 H 1.08998 * 109.46693 * 239.99817 * 2 1 3 32 32 H 1.08999 * 109.46812 * 119.99415 * 2 1 3 33 33 H 0.96998 * 120.00304 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47365 * 183.67695 * 16 14 12 35 35 H 1.09003 * 109.47246 * 303.67998 * 16 14 12 36 36 H 1.09001 * 109.47326 * 63.67283 * 16 14 12 37 37 H 1.08003 * 120.02968 * 359.96971 * 19 18 17 38 38 H 1.08997 * 109.47006 * 0.25548 * 21 20 19 39 39 H 1.08998 * 109.46882 * 299.99751 * 22 21 20 40 40 H 1.08997 * 109.47512 * 60.00197 * 22 21 20 41 41 H 1.09002 * 109.46990 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47193 * 60.00280 * 23 21 20 43 43 H 1.09000 * 109.47061 * 180.02562 * 23 21 20 44 44 H 1.08997 * 109.47338 * 300.00045 * 23 21 20 45 45 H 1.07996 * 119.94918 * 179.74699 * 24 20 19 46 46 H 1.07998 * 119.97003 * 179.97438 * 25 24 20 47 47 H 1.09006 * 109.46963 * 270.01910 * 27 26 25 48 48 H 1.09001 * 109.47133 * 30.01575 * 27 26 25 49 49 H 1.09001 * 109.47412 * 150.02041 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3517 1.9904 -1.1822 5 1 2.8827 2.9308 -1.1741 6 6 2.0064 1.3979 -2.3906 7 7 0.9998 0.5548 -2.4451 8 14 2.9730 1.7997 -3.9378 9 1 4.3955 1.4195 -3.7453 10 1 2.4086 1.0434 -5.0844 11 1 2.8828 3.2560 -4.2136 12 6 2.1400 2.0530 1.1620 13 8 1.8896 1.4992 2.2117 14 6 2.5872 3.4922 1.1572 15 1 2.0020 4.0519 0.4276 16 6 4.0695 3.5644 0.7855 17 8 2.3938 4.0554 2.4562 18 6 2.2143 5.4008 2.5248 19 6 2.3358 6.1773 1.3813 20 6 2.1477 7.5438 1.4527 21 6 2.2740 8.3871 0.2102 22 6 0.9524 9.1127 -0.0501 23 6 3.3908 9.4150 0.4027 24 6 1.8489 8.1394 2.6645 25 6 1.7328 7.3686 3.8063 26 6 1.9147 6.0006 3.7391 27 6 1.7887 5.1610 4.9842 28 1 -0.3633 0.5322 0.8791 29 1 -0.3633 0.4953 -0.9004 30 1 -0.3634 -1.0274 0.0212 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.7585 0.1415 -3.2888 34 1 4.4092 4.5983 0.8455 35 1 4.6478 2.9512 1.4767 36 1 4.2078 3.1949 -0.2306 37 1 2.5737 5.7132 0.4356 38 1 2.5112 7.7479 -0.6402 39 1 0.1568 8.3804 -0.1873 40 1 0.7152 9.7519 0.8003 41 1 1.0435 9.7223 -0.9491 42 1 4.3324 8.8981 0.5882 43 1 3.4818 10.0252 -0.4958 44 1 3.1536 10.0542 1.2531 45 1 1.7062 9.2085 2.7191 46 1 1.4998 7.8361 4.7515 47 1 2.7614 5.0831 5.4699 48 1 1.0781 5.6274 5.6665 49 1 1.4354 4.1651 4.7166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232297.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:18 Heat of formation + Delta-G solvation = -51.761732 kcal Electronic energy + Delta-G solvation = -28083.111319 eV Core-core repulsion = 24396.635564 eV Total energy + Delta-G solvation = -3686.475756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.29842 -38.83218 -37.42437 -35.40818 -34.93581 -32.01541 -31.59812 -31.23029 -29.77988 -29.09511 -27.19754 -26.32918 -25.11725 -24.00738 -22.71577 -22.28065 -21.19171 -19.87214 -19.13993 -17.47069 -17.12814 -15.91626 -15.81012 -15.37684 -15.08154 -14.62052 -14.39140 -14.20336 -14.04188 -13.76815 -13.45656 -13.32528 -13.20995 -12.93000 -12.66171 -12.42728 -12.34109 -12.17249 -12.10060 -11.84295 -11.63801 -11.57578 -11.39972 -11.25452 -11.21869 -11.15183 -10.95491 -10.77078 -10.68347 -10.53313 -10.41764 -10.24019 -10.19044 -9.68926 -9.01696 -8.54510 -8.34972 -7.87306 -7.71984 -6.48094 -3.99567 1.50200 1.68827 3.02101 3.13584 3.14197 3.44065 3.78489 3.92550 4.00535 4.63813 4.79908 4.80988 4.90707 5.09448 5.16005 5.19653 5.35967 5.41640 5.45105 5.54810 5.58422 5.65790 5.70644 5.74819 5.82208 5.84887 5.88333 5.94376 5.95902 6.11416 6.13413 6.18473 6.19834 6.24951 6.47219 6.52431 6.56151 6.60050 6.70677 6.73926 6.80411 6.81870 6.98466 7.05934 7.23622 7.32012 7.63456 7.77591 7.86148 8.34097 8.95964 9.41641 9.82916 10.48372 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011936 B = 0.004457 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.310972 B = 6281.058177 C = 7875.446619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 N -0.432 5.432 4 C -0.352 4.352 5 H 0.104 0.896 6 C 0.042 3.958 7 N -0.848 5.848 8 Si 0.913 3.087 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.272 1.272 12 C 0.458 3.542 13 O -0.591 6.591 14 C 0.083 3.917 15 H 0.090 0.910 16 C -0.175 4.175 17 O -0.283 6.283 18 C 0.144 3.856 19 C -0.206 4.206 20 C -0.043 4.043 21 C -0.059 4.059 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.160 4.160 25 C -0.084 4.084 26 C -0.126 4.126 27 C -0.104 4.104 28 H 0.026 0.974 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.271 0.729 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.117 0.883 46 H 0.123 0.877 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 13.643 3.466 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 N -0.151 5.151 4 C -0.479 4.479 5 H 0.121 0.879 6 C -0.164 4.164 7 N -0.485 5.485 8 Si 0.739 3.261 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.245 3.755 13 O -0.476 6.476 14 C 0.024 3.976 15 H 0.107 0.893 16 C -0.233 4.233 17 O -0.195 6.195 18 C 0.097 3.903 19 C -0.225 4.225 20 C -0.043 4.043 21 C -0.078 4.078 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.178 4.178 25 C -0.102 4.102 26 C -0.127 4.127 27 C -0.161 4.161 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.312 13.046 3.960 13.829 hybrid contribution 0.407 0.238 -1.225 1.313 sum 2.719 13.284 2.735 13.833 Atomic orbital electron populations 1.22119 0.96600 0.99524 1.02418 1.21103 0.94601 0.82485 1.00004 1.43678 1.55371 1.11379 1.04667 1.19764 1.36771 1.08544 0.82790 0.87857 1.25207 0.95110 0.96870 0.99186 1.70107 1.22070 1.29187 1.27161 0.86220 0.80312 0.78818 0.80757 1.19714 1.20738 1.19746 1.19435 0.84573 0.86942 0.84561 1.90556 1.56445 1.69303 1.31309 1.22082 0.97584 0.94932 0.82987 0.89260 1.22375 0.94586 1.02097 1.04235 1.86190 1.85316 1.17242 1.30784 1.18960 0.94346 0.83366 0.93585 1.21277 1.08703 0.94114 0.98401 1.19561 0.97197 0.92841 0.94740 1.20143 0.96027 0.96289 0.95305 1.21837 0.96611 1.00181 1.01333 1.21833 0.98119 0.98365 1.01547 1.20716 1.05455 0.99381 0.92230 1.20763 0.99101 0.92125 0.98234 1.19244 1.05706 0.93947 0.93810 1.20591 1.01512 1.00076 0.93919 0.95519 0.88571 0.94821 0.89344 0.94270 0.91875 0.92347 0.91769 0.88714 0.85082 0.90368 0.92385 0.92536 0.92541 0.92538 0.92559 0.92534 0.86524 0.85935 0.91788 0.92246 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.71 37.16 0.36 -3.11 16 2 C 0.14 3.42 5.27 -4.04 -0.02 3.40 16 3 N -0.43 -10.72 2.64 -114.81 -0.30 -11.03 16 4 C -0.35 -8.40 8.49 -14.93 -0.13 -8.53 16 5 H 0.10 2.28 4.67 -52.49 -0.25 2.03 16 6 C 0.04 1.00 4.88 -17.47 -0.09 0.91 16 7 N -0.85 -20.58 8.44 55.50 0.47 -20.11 16 8 Si 0.91 18.23 29.62 -169.99 -5.03 13.20 16 9 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 12 C 0.46 11.39 6.97 -10.98 -0.08 11.31 16 13 O -0.59 -16.40 16.19 -14.12 -0.23 -16.63 16 14 C 0.08 1.74 1.80 -27.88 -0.05 1.69 16 15 H 0.09 1.83 5.69 -51.93 -0.30 1.53 16 16 C -0.18 -3.15 8.82 37.15 0.33 -2.82 16 17 O -0.28 -5.90 8.40 -39.08 -0.33 -6.23 16 18 C 0.14 2.57 6.57 -39.22 -0.26 2.31 16 19 C -0.21 -3.31 7.90 -39.43 -0.31 -3.62 16 20 C -0.04 -0.59 4.78 -104.64 -0.50 -1.09 16 21 C -0.06 -0.67 3.09 -91.77 -0.28 -0.95 16 22 C -0.14 -1.44 9.01 37.16 0.33 -1.10 16 23 C -0.14 -1.35 9.01 37.16 0.33 -1.02 16 24 C -0.16 -2.01 8.71 -39.56 -0.34 -2.36 16 25 C -0.08 -1.11 9.70 -39.60 -0.38 -1.49 16 26 C -0.13 -1.99 5.89 -104.47 -0.62 -2.61 16 27 C -0.10 -1.51 9.79 36.01 0.35 -1.16 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 2.39 5.96 -51.93 -0.31 2.08 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.18 6.10 -51.93 -0.32 1.86 16 32 H 0.04 0.95 7.55 -51.93 -0.39 0.56 16 33 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 34 H 0.06 0.91 7.09 -51.93 -0.37 0.54 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.70 5.59 -51.93 -0.29 1.41 16 37 H 0.13 2.08 5.41 -52.48 -0.28 1.80 16 38 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 45 H 0.12 1.20 7.10 -52.49 -0.37 0.83 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 49 H 0.08 1.29 7.53 -51.93 -0.39 0.90 16 LS Contribution 381.90 15.07 5.76 5.76 Total: -1.00 -28.20 381.90 -8.82 -37.02 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.80 Total: 8.26 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.35 Total: -10.23 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.17 Total: -31.14 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.56 Total: -22.86 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.20 -8.82 -37.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232297.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.739 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds