Wall clock time and date at job start Tue Mar 31 2020 13:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46917 * 2 1 4 4 C 1.37098 * 120.00104 * 86.75387 * 3 2 1 5 5 H 1.07997 * 120.00241 * 205.61375 * 4 3 2 6 6 C 1.38948 * 119.99881 * 25.61430 * 4 3 2 7 7 N 1.31406 * 120.00325 * 37.74554 * 6 4 3 8 8 Si 1.86802 * 120.00022 * 217.74854 * 6 4 3 9 9 H 1.48502 * 109.47146 * 94.98901 * 8 6 4 10 10 H 1.48497 * 109.47610 * 214.99126 * 8 6 4 11 11 H 1.48500 * 109.47124 * 334.99409 * 8 6 4 12 12 C 1.34777 * 119.99802 * 266.75464 * 3 2 1 13 13 O 1.21293 * 119.99590 * 183.98357 * 12 3 2 14 14 C 1.50698 * 120.00425 * 3.98476 * 12 3 2 15 15 H 1.09010 * 109.46640 * 42.70487 * 14 12 3 16 16 C 1.52998 * 109.47077 * 282.70740 * 14 12 3 17 17 O 1.42899 * 109.47368 * 162.70326 * 14 12 3 18 18 C 1.35892 * 117.00109 * 203.58672 * 17 14 12 19 19 C 1.38738 * 120.05804 * 174.15982 * 18 17 14 20 20 C 1.38142 * 119.94652 * 179.74133 * 19 18 17 21 21 C 1.38267 * 120.05668 * 0.51615 * 20 19 18 22 22 C 1.50695 * 119.94736 * 179.74355 * 21 20 19 23 23 C 1.52999 * 109.47024 * 240.01676 * 22 21 20 24 24 C 1.52996 * 109.47107 * 0.02562 * 22 21 20 25 25 C 1.53002 * 109.47128 * 120.01578 * 22 21 20 26 26 C 1.38270 * 120.11001 * 359.75956 * 21 20 19 27 27 C 1.38145 * 120.05665 * 359.97438 * 26 21 20 28 28 H 1.08997 * 109.47787 * 64.73758 * 1 2 3 29 29 H 1.09002 * 109.47127 * 184.74129 * 1 2 3 30 30 H 1.09003 * 109.47057 * 304.73530 * 1 2 3 31 31 H 1.08998 * 109.46704 * 240.00399 * 2 1 3 32 32 H 1.08994 * 109.47423 * 119.99952 * 2 1 3 33 33 H 0.96996 * 120.00577 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47092 * 59.43141 * 16 14 12 35 35 H 1.09004 * 109.46817 * 179.42966 * 16 14 12 36 36 H 1.08993 * 109.47448 * 299.42910 * 16 14 12 37 37 H 1.08001 * 120.02543 * 359.97438 * 19 18 17 38 38 H 1.07993 * 119.97529 * 180.27038 * 20 19 18 39 39 H 1.08998 * 109.47015 * 60.00016 * 23 22 21 40 40 H 1.09000 * 109.46813 * 179.97438 * 23 22 21 41 41 H 1.08996 * 109.47352 * 299.99806 * 23 22 21 42 42 H 1.09007 * 109.46903 * 59.99874 * 24 22 21 43 43 H 1.09000 * 109.47305 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47440 * 300.00294 * 24 22 21 45 45 H 1.08996 * 109.47082 * 60.00295 * 25 22 21 46 46 H 1.09006 * 109.46570 * 179.97438 * 25 22 21 47 47 H 1.08998 * 109.47205 * 299.99996 * 25 22 21 48 48 H 1.07997 * 119.97332 * 179.97438 * 26 21 20 49 49 H 1.08001 * 120.03462 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1834 2.0500 1.1854 5 1 2.1338 3.1285 1.2084 6 6 2.4146 1.3400 2.3572 7 7 3.1715 0.2660 2.3363 8 14 1.6493 1.9122 3.9623 9 1 0.3755 1.1837 4.1908 10 1 2.5846 1.6371 5.0825 11 1 1.3792 3.3706 3.8898 12 6 2.3052 1.9945 -1.1654 13 8 2.7775 3.1117 -1.1624 14 6 2.0392 1.2923 -2.4719 15 1 1.0706 0.7944 -2.4261 16 6 3.1346 0.2547 -2.7255 17 8 2.0335 2.2483 -3.5340 18 6 1.3489 1.9158 -4.6598 19 6 1.1992 2.8426 -5.6813 20 6 0.5073 2.5003 -6.8270 21 6 -0.0450 1.2389 -6.9516 22 6 -0.8042 0.8701 -8.2001 23 6 -2.2422 0.4996 -7.8317 24 6 -0.8143 2.0605 -9.1612 25 6 -0.1267 -0.3242 -8.8749 26 6 0.0979 0.3153 -5.9326 27 6 0.7935 0.6508 -4.7872 28 1 -0.3634 0.4385 -0.9293 29 1 -0.3633 -1.0242 0.0849 30 1 -0.3633 0.5856 0.8446 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.3326 -0.2299 3.1543 34 1 3.1455 -0.4688 -1.9102 35 1 2.9366 -0.2602 -3.6656 36 1 4.1019 0.7538 -2.7813 37 1 1.6265 3.8295 -5.5825 38 1 0.3943 3.2199 -7.6243 39 1 -2.7248 1.3505 -7.3509 40 1 -2.7914 0.2333 -8.7347 41 1 -2.2349 -0.3485 -7.1471 42 1 0.2103 2.3243 -9.4235 43 1 -1.3630 1.7936 -10.0644 44 1 -1.2968 2.9115 -8.6805 45 1 -0.1194 -1.1723 -8.1903 46 1 -0.6762 -0.5912 -9.7777 47 1 0.8978 -0.0603 -9.1373 48 1 -0.3348 -0.6692 -6.0321 49 1 0.9045 -0.0707 -3.9913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:51 Heat of formation + Delta-G solvation = -48.281713 kcal Electronic energy + Delta-G solvation = -27539.612549 eV Core-core repulsion = 23853.287699 eV Total energy + Delta-G solvation = -3686.324851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39856 -39.12494 -37.84501 -35.56248 -34.95226 -32.49534 -31.42885 -30.67651 -29.58015 -28.82267 -27.53779 -27.42536 -25.47501 -24.02946 -22.58082 -22.50411 -21.81464 -19.49019 -18.93930 -18.04575 -16.88569 -16.11589 -15.94647 -15.45451 -15.06432 -14.91843 -14.50828 -14.41110 -14.30145 -13.90493 -13.81956 -13.37895 -13.28303 -13.05495 -12.80616 -12.67402 -12.52316 -12.25130 -12.08562 -12.06206 -11.93836 -11.88669 -11.65788 -11.45410 -11.21110 -11.15292 -11.00662 -10.97064 -10.77592 -10.53290 -10.47054 -10.38014 -10.26094 -10.03045 -9.03006 -8.90178 -8.38680 -7.84647 -7.66747 -6.51031 -3.88428 1.43778 1.54265 3.10122 3.22644 3.26369 3.39560 3.76229 3.85294 4.15337 4.49280 4.59347 4.77804 4.82929 4.84688 4.95249 5.05626 5.14873 5.20023 5.36385 5.39430 5.41887 5.42192 5.48545 5.56370 5.57047 5.67872 5.68096 5.72460 5.75891 5.79594 5.87229 5.94066 5.98043 6.07506 6.10210 6.12405 6.13144 6.22493 6.32731 6.45884 6.51778 6.53181 6.68837 6.78917 6.90356 7.07204 7.53246 7.69802 8.12339 8.42734 9.11861 9.33261 9.92975 10.52700 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025924 B = 0.002799 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.829703 B =10000.077158 C =10270.887319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 N -0.430 5.430 4 C -0.322 4.322 5 H 0.100 0.900 6 C 0.046 3.954 7 N -0.842 5.842 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.452 3.548 13 O -0.564 6.564 14 C 0.073 3.927 15 H 0.081 0.919 16 C -0.175 4.175 17 O -0.284 6.284 18 C 0.137 3.863 19 C -0.154 4.154 20 C -0.082 4.082 21 C -0.121 4.121 22 C -0.023 4.023 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.074 4.074 27 C -0.212 4.212 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.119 0.881 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -5.387 -18.441 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.043 4.043 3 N -0.150 5.150 4 C -0.448 4.448 5 H 0.118 0.882 6 C -0.161 4.161 7 N -0.478 5.478 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.239 3.761 13 O -0.446 6.446 14 C 0.014 3.986 15 H 0.099 0.901 16 C -0.232 4.232 17 O -0.196 6.196 18 C 0.091 3.909 19 C -0.173 4.173 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.023 4.023 23 C -0.196 4.196 24 C -0.201 4.201 25 C -0.195 4.195 26 C -0.092 4.092 27 C -0.230 4.230 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.137 0.863 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.318 -4.792 -18.242 20.614 hybrid contribution -0.390 -0.238 0.962 1.065 sum -8.707 -5.030 -17.280 19.993 Atomic orbital electron populations 1.22153 0.97651 1.00720 1.01685 1.21845 0.92834 0.85477 1.04188 1.43557 1.55185 1.11922 1.04324 1.19453 1.49840 0.93261 0.82238 0.88238 1.25164 0.94826 0.96611 0.99475 1.70184 1.28297 1.19702 1.29653 0.86300 0.79532 0.79976 0.81391 1.20206 1.21068 1.19050 1.19671 0.83989 0.88485 0.83967 1.90550 1.47216 1.20308 1.86512 1.22356 0.99886 0.89664 0.86745 0.90105 1.22386 0.99702 0.98663 1.02496 1.86260 1.67315 1.43976 1.22024 1.19232 0.91323 0.92955 0.87409 1.20468 1.03961 0.99628 0.93205 1.20922 0.96386 0.96040 0.96643 1.19603 1.01915 0.94473 0.96140 1.19385 0.94660 0.95812 0.92467 1.21894 0.94866 1.01625 1.01169 1.21960 1.01917 0.97624 0.98598 1.21893 1.00475 0.97117 1.00028 1.20693 0.97232 0.98829 0.92478 1.21344 1.04554 0.96740 1.00391 0.94011 0.92877 0.91856 0.92493 0.87231 0.92073 0.89732 0.91831 0.90935 0.85286 0.85346 0.92489 0.92647 0.92504 0.92275 0.92607 0.92249 0.92521 0.92654 0.92519 0.86256 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.15 37.16 0.38 -2.53 16 2 C 0.08 1.67 5.33 -4.04 -0.02 1.65 16 3 N -0.43 -10.77 2.60 -114.82 -0.30 -11.07 16 4 C -0.32 -8.86 8.99 -14.93 -0.13 -8.99 16 5 H 0.10 2.94 7.69 -52.49 -0.40 2.54 16 6 C 0.05 1.19 4.66 -17.47 -0.08 1.11 16 7 N -0.84 -22.00 11.72 55.50 0.65 -21.35 16 8 Si 0.90 19.95 29.68 -169.99 -5.05 14.90 16 9 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.45 11.40 6.92 -10.99 -0.08 11.32 16 13 O -0.56 -16.67 16.34 -13.74 -0.22 -16.89 16 14 C 0.07 1.45 1.81 -27.89 -0.05 1.40 16 15 H 0.08 1.43 4.69 -51.92 -0.24 1.19 16 16 C -0.18 -2.98 8.82 37.16 0.33 -2.65 16 17 O -0.28 -5.77 9.40 -38.69 -0.36 -6.13 16 18 C 0.14 2.29 6.59 -39.21 -0.26 2.03 16 19 C -0.15 -2.27 9.99 -39.43 -0.39 -2.66 16 20 C -0.08 -0.99 8.97 -39.61 -0.36 -1.34 16 21 C -0.12 -1.37 4.76 -104.60 -0.50 -1.87 16 22 C -0.02 -0.20 0.85 -155.66 -0.13 -0.34 16 23 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 24 C -0.14 -1.10 7.13 37.16 0.26 -0.84 16 25 C -0.14 -1.10 8.29 37.16 0.31 -0.79 16 26 C -0.07 -0.89 8.70 -39.60 -0.34 -1.24 16 27 C -0.21 -3.01 8.19 -39.43 -0.32 -3.33 16 28 H 0.04 0.69 7.12 -51.93 -0.37 0.32 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.03 4.33 -51.93 -0.23 0.81 16 32 H 0.11 2.50 5.43 -51.93 -0.28 2.22 16 33 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.08 1.40 5.81 -51.93 -0.30 1.10 16 35 H 0.06 0.90 6.74 -51.93 -0.35 0.55 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.13 1.25 5.88 -52.49 -0.31 0.94 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.46 7.38 -51.93 -0.38 0.08 16 42 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 45 H 0.06 0.45 7.38 -51.93 -0.38 0.06 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.12 1.18 7.09 -52.49 -0.37 0.81 16 49 H 0.13 1.73 5.36 -52.49 -0.28 1.45 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -31.54 380.94 -8.25 -39.79 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.62 Total: 4.90 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.08 Total: -9.89 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: 0.35 Total: -32.42 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.59 Total: -23.03 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.05 Total: 14.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.54 -8.25 -39.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.490 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds