Wall clock time and date at job start Tue Mar 31 2020 12:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99719 * 2 1 4 4 C 1.50699 * 120.00239 * 180.02562 * 2 1 3 5 5 N 1.46892 * 109.47247 * 96.98445 * 4 2 1 6 6 C 1.46906 * 111.00038 * 166.21895 * 5 4 2 7 7 C 1.52997 * 109.47024 * 299.15631 * 6 5 4 8 8 C 1.46898 * 111.00260 * 290.17367 * 5 4 2 9 9 C 1.53000 * 109.47671 * 162.51986 * 8 5 4 10 10 H 1.09006 * 109.46655 * 306.80641 * 9 8 5 11 11 O 1.42899 * 109.47022 * 66.80022 * 9 8 5 12 12 C 1.52992 * 109.47391 * 186.80261 * 9 8 5 13 13 O 1.42901 * 109.47393 * 174.99716 * 12 9 8 14 14 C 1.35673 * 117.00597 * 179.97438 * 13 12 9 15 15 C 1.39314 * 119.81471 * 359.72887 * 14 13 12 16 16 C 1.36432 * 120.18678 * 179.75691 * 15 14 13 17 17 C 1.40837 * 119.81036 * 0.51221 * 16 15 14 18 18 C 1.41209 * 120.18146 * 179.71797 * 17 16 15 19 19 H 1.07998 * 120.00083 * 29.50370 * 18 17 16 20 20 C 1.39894 * 120.00285 * 209.50849 * 18 17 16 21 21 N 1.30880 * 119.99498 * 11.93652 * 20 18 17 22 22 Si 1.86799 * 120.00306 * 191.93995 * 20 18 17 23 23 H 1.48500 * 109.47178 * 89.99431 * 22 20 18 24 24 H 1.48496 * 109.47086 * 210.00004 * 22 20 18 25 25 H 1.48506 * 109.47113 * 329.99823 * 22 20 18 26 26 C 1.40837 * 119.63935 * 359.74542 * 17 16 15 27 27 C 1.36437 * 119.81179 * 359.97438 * 26 17 16 28 28 H 1.07993 * 119.99956 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99502 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47074 * 275.05395 * 3 2 1 31 31 H 1.08998 * 109.47410 * 35.04839 * 3 2 1 32 32 H 1.09001 * 109.47306 * 155.05409 * 3 2 1 33 33 H 1.09003 * 109.46518 * 336.98069 * 4 2 1 34 34 H 1.09002 * 109.47007 * 216.98753 * 4 2 1 35 35 H 1.09003 * 109.46757 * 59.15537 * 6 5 4 36 36 H 1.08995 * 109.47135 * 179.15174 * 6 5 4 37 37 H 1.09002 * 109.47262 * 307.02957 * 7 6 5 38 38 H 1.08995 * 109.46944 * 67.02973 * 7 6 5 39 39 H 1.09000 * 109.47033 * 187.03324 * 7 6 5 40 40 H 1.08997 * 109.47101 * 42.51856 * 8 5 4 41 41 H 1.09000 * 109.47083 * 282.52099 * 8 5 4 42 42 H 0.96701 * 114.00166 * 60.00201 * 11 9 8 43 43 H 1.09000 * 109.47138 * 54.99920 * 12 9 8 44 44 H 1.08999 * 109.47399 * 294.99753 * 12 9 8 45 45 H 1.08008 * 119.90635 * 0.02562 * 15 14 13 46 46 H 1.08002 * 120.10105 * 180.25377 * 16 15 14 47 47 H 0.97005 * 119.99845 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.09428 * 179.97438 * 26 17 16 49 49 H 1.08000 * 119.90767 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4543 -1.6443 -1.3754 6 6 3.4563 -2.7185 -1.3881 7 6 4.7087 -2.2565 -0.6404 8 6 1.2815 -2.0089 -2.1812 9 6 1.6389 -1.9303 -3.6668 10 1 2.0610 -0.9498 -3.8875 11 8 2.5970 -2.9430 -3.9805 12 6 0.3780 -2.1434 -4.5067 13 8 0.6886 -1.9548 -5.8888 14 6 -0.3269 -2.1091 -6.7751 15 6 -1.6001 -2.4426 -6.3185 16 6 -2.6280 -2.5947 -7.2027 17 6 -2.3965 -2.4243 -8.5814 18 6 -3.4533 -2.5858 -9.5039 19 1 -4.4683 -2.3680 -9.2059 20 6 -3.1857 -3.0279 -10.8039 21 7 -2.0067 -3.5128 -11.1004 22 14 -4.5108 -2.9262 -12.1165 23 1 -4.4212 -1.6161 -12.8099 24 1 -4.3179 -4.0214 -13.1006 25 1 -5.8470 -3.0602 -11.4824 26 6 -1.1052 -2.0925 -9.0351 27 6 -0.0895 -1.9384 -8.1372 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 2.1667 1.6651 -1.0237 31 1 1.5166 2.0404 0.5901 32 1 3.0521 1.1540 0.4334 33 1 1.4261 -2.0928 0.4009 34 1 2.9562 -1.2095 0.6178 35 1 3.0471 -3.6029 -0.8996 36 1 3.7167 -2.9603 -2.4185 37 1 5.0461 -1.3045 -1.0503 38 1 4.4760 -2.1346 0.4174 39 1 5.4962 -3.0013 -0.7558 40 1 0.4649 -1.3195 -1.9670 41 1 0.9731 -3.0250 -1.9351 42 1 2.2885 -3.8432 -3.8085 43 1 -0.3853 -1.4263 -4.2048 44 1 0.0059 -3.1564 -4.3530 45 1 -1.7750 -2.5768 -5.2611 46 1 -3.6154 -2.8492 -6.8468 47 1 -1.8210 -3.8191 -12.0018 48 1 -0.9193 -1.9605 -10.0908 49 1 0.9014 -1.6844 -8.4834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072702236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:43 Heat of formation + Delta-G solvation = -50.593560 kcal Electronic energy + Delta-G solvation = -26448.840473 eV Core-core repulsion = 22762.415373 eV Total energy + Delta-G solvation = -3686.425100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.49282 -38.61657 -37.01855 -36.00096 -34.72063 -33.26663 -31.73744 -30.06676 -29.39308 -28.90511 -27.48569 -26.90690 -24.94866 -24.19854 -22.17738 -21.21445 -20.67753 -20.54772 -18.77603 -17.33435 -17.17956 -16.52298 -16.39966 -15.80931 -15.43217 -15.16571 -14.98257 -14.53395 -14.12935 -14.11053 -13.98241 -13.90105 -13.46833 -13.20565 -12.85077 -12.62268 -12.27578 -12.16490 -12.09844 -12.00654 -11.84769 -11.69463 -11.63392 -11.40189 -11.20767 -11.17640 -11.11434 -10.94941 -10.72809 -10.58335 -9.93308 -9.79777 -9.74147 -9.33927 -9.29684 -9.06890 -8.49837 -7.64228 -6.95962 -6.66138 -4.26206 1.92223 2.79390 2.94815 3.10416 3.13602 3.21571 3.53787 3.98208 4.09799 4.40385 4.56223 4.63727 4.66781 4.88267 4.93572 4.97981 5.11647 5.16282 5.20458 5.33398 5.35448 5.38073 5.41586 5.49625 5.52927 5.61864 5.66767 5.68723 5.69532 5.79592 5.98033 6.03472 6.05921 6.12108 6.23213 6.34246 6.55813 6.72799 6.86428 6.88468 6.98012 7.12113 7.21037 7.46090 7.56997 7.63027 7.78461 8.02486 8.21761 8.46076 8.66817 8.92660 8.99619 10.29480 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025063 B = 0.002216 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.917528 B =12630.250740 C =13299.060304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 C -0.112 4.112 4 C 0.080 3.920 5 N -0.523 5.523 6 C 0.031 3.969 7 C -0.149 4.149 8 C 0.023 3.977 9 C 0.119 3.881 10 H 0.114 0.886 11 O -0.546 6.546 12 C 0.040 3.960 13 O -0.316 6.316 14 C -0.002 4.002 15 C -0.172 4.172 16 C -0.193 4.193 17 C 0.087 3.913 18 C -0.466 4.466 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.808 5.808 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.024 0.976 36 H 0.113 0.887 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.368 0.632 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.279 0.721 48 H 0.125 0.875 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 3.048 19.936 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.112 4.112 3 C -0.169 4.169 4 C -0.047 4.047 5 N -0.247 5.247 6 C -0.096 4.096 7 C -0.207 4.207 8 C -0.106 4.106 9 C 0.059 3.941 10 H 0.131 0.869 11 O -0.350 6.350 12 C -0.038 4.038 13 O -0.232 6.232 14 C -0.045 4.045 15 C -0.191 4.191 16 C -0.213 4.213 17 C 0.085 3.915 18 C -0.497 4.497 19 H 0.093 0.907 20 C -0.143 4.143 21 N -0.435 5.435 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.131 0.869 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.215 0.785 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.083 3.907 19.319 21.702 hybrid contribution -1.723 -1.369 0.102 2.203 sum 7.360 2.538 19.421 20.923 Atomic orbital electron populations 1.23736 0.95308 1.01925 1.02593 1.21670 0.95000 0.95768 0.98782 1.20771 0.99693 0.94017 1.02402 1.21291 0.99156 0.93723 0.90506 1.61924 1.11429 1.40959 1.10436 1.22604 0.92003 0.91074 1.03917 1.21829 0.97204 1.02170 0.99453 1.22770 0.93735 1.00108 0.93963 1.21909 0.88355 0.93599 0.90233 0.86850 1.86605 1.42003 1.17569 1.88862 1.23095 0.97232 1.00518 0.82936 1.85894 1.35304 1.87895 1.14107 1.18655 0.86583 1.10262 0.89015 1.20401 0.93304 1.07584 0.97800 1.20619 0.97245 1.09515 0.93899 1.17604 0.93129 0.89581 0.91189 1.19434 0.94801 1.40319 0.95126 0.90674 1.25850 0.96303 0.92777 0.99384 1.69804 1.22052 1.30401 1.21218 0.86288 0.81488 0.78619 0.80109 1.19419 1.20413 1.18820 1.20995 0.92794 1.01811 0.98839 1.19862 0.98941 1.05492 0.89824 0.88200 0.88762 0.91004 0.92245 0.92082 0.94531 0.89693 0.95734 0.86947 0.91680 0.93378 0.92298 0.89225 0.94302 0.78477 0.92408 0.93130 0.88961 0.88729 0.91037 0.85683 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 12.40 29.01 0.36 -1.32 16 2 C -0.11 -0.98 5.08 -101.07 -0.51 -1.49 16 3 C -0.11 -0.89 10.02 36.01 0.36 -0.53 16 4 C 0.08 0.70 4.99 -4.98 -0.02 0.67 16 5 N -0.52 -5.17 4.45 -236.08 -1.05 -6.22 16 6 C 0.03 0.29 5.41 -3.82 -0.02 0.26 16 7 C -0.15 -1.19 9.53 37.16 0.35 -0.84 16 8 C 0.02 0.23 4.63 -3.83 -0.02 0.22 16 9 C 0.12 1.51 3.45 -26.74 -0.09 1.42 16 10 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 11 O -0.55 -7.08 10.28 -40.08 -0.41 -7.49 16 12 C 0.04 0.61 4.36 37.15 0.16 0.77 16 13 O -0.32 -6.52 10.09 -23.57 -0.24 -6.76 16 14 C 0.00 -0.04 6.71 -38.78 -0.26 -0.30 16 15 C -0.17 -3.89 8.96 -39.83 -0.36 -4.25 16 16 C -0.19 -4.76 9.74 -39.25 -0.38 -5.15 16 17 C 0.09 2.34 5.54 -106.80 -0.59 1.75 16 18 C -0.47 -12.47 9.04 -37.83 -0.34 -12.82 16 19 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 20 C 0.07 1.84 5.22 -17.34 -0.09 1.75 16 21 N -0.81 -21.24 10.95 55.54 0.61 -20.63 16 22 Si 0.91 18.97 29.58 -169.99 -5.03 13.95 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 26 C -0.12 -3.30 8.60 -39.25 -0.34 -3.64 16 27 C -0.12 -3.00 9.92 -39.83 -0.40 -3.40 16 28 H 0.10 0.79 8.05 -52.49 -0.42 0.37 16 29 H 0.09 0.77 7.86 -52.49 -0.41 0.36 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.06 -51.93 -0.42 0.03 16 33 H 0.04 0.32 7.90 -51.93 -0.41 -0.09 16 34 H 0.08 0.68 5.83 -51.93 -0.30 0.38 16 35 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.11 1.18 5.15 -51.93 -0.27 0.91 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.35 6.52 -51.93 -0.34 0.01 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.92 5.79 -51.93 -0.30 0.62 16 41 H 0.04 0.37 8.03 -51.93 -0.42 -0.05 16 42 H 0.37 3.64 9.05 45.56 0.41 4.05 16 43 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 44 H 0.05 0.74 7.63 -51.93 -0.40 0.35 16 45 H 0.09 1.79 6.27 -52.48 -0.33 1.47 16 46 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 47 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 48 H 0.13 3.38 6.31 -52.49 -0.33 3.05 16 49 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -29.25 391.47 -9.67 -38.92 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.26 Total: 9.22 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: -2.19 Total: -26.88 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: -0.44 Total: -26.85 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.65 Total: -14.25 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.25 -9.67 -38.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072702236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.677 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds