Wall clock time and date at job start Tue Mar 31 2020 12:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 119.99719 * 2 1 4 4 C 1.50699 * 120.00239 * 180.02562 * 2 1 3 5 5 N 1.46892 * 109.47247 * 96.98445 * 4 2 1 6 6 C 1.46906 * 111.00038 * 166.21895 * 5 4 2 7 7 C 1.52997 * 109.47024 * 299.15631 * 6 5 4 8 8 C 1.46898 * 111.00260 * 290.17367 * 5 4 2 9 9 C 1.53000 * 109.47671 * 162.51986 * 8 5 4 10 10 H 1.09006 * 109.46655 * 306.80641 * 9 8 5 11 11 O 1.42899 * 109.47022 * 66.80022 * 9 8 5 12 12 C 1.52992 * 109.47391 * 186.80261 * 9 8 5 13 13 O 1.42901 * 109.47393 * 174.99716 * 12 9 8 14 14 C 1.35673 * 117.00597 * 179.97438 * 13 12 9 15 15 C 1.39314 * 119.81471 * 359.72887 * 14 13 12 16 16 C 1.36432 * 120.18678 * 179.75691 * 15 14 13 17 17 C 1.40837 * 119.81036 * 0.51221 * 16 15 14 18 18 C 1.41209 * 120.18146 * 179.71797 * 17 16 15 19 19 H 1.07998 * 120.00083 * 29.50370 * 18 17 16 20 20 C 1.39894 * 120.00285 * 209.50849 * 18 17 16 21 21 N 1.30880 * 119.99498 * 11.93652 * 20 18 17 22 22 Si 1.86799 * 120.00306 * 191.93995 * 20 18 17 23 23 H 1.48500 * 109.47178 * 89.99431 * 22 20 18 24 24 H 1.48496 * 109.47086 * 210.00004 * 22 20 18 25 25 H 1.48506 * 109.47113 * 329.99823 * 22 20 18 26 26 C 1.40837 * 119.63935 * 359.74542 * 17 16 15 27 27 C 1.36437 * 119.81179 * 359.97438 * 26 17 16 28 28 H 1.07993 * 119.99956 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.99502 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47074 * 275.05395 * 3 2 1 31 31 H 1.08998 * 109.47410 * 35.04839 * 3 2 1 32 32 H 1.09001 * 109.47306 * 155.05409 * 3 2 1 33 33 H 1.09003 * 109.46518 * 336.98069 * 4 2 1 34 34 H 1.09002 * 109.47007 * 216.98753 * 4 2 1 35 35 H 1.09003 * 109.46757 * 59.15537 * 6 5 4 36 36 H 1.08995 * 109.47135 * 179.15174 * 6 5 4 37 37 H 1.09002 * 109.47262 * 307.02957 * 7 6 5 38 38 H 1.08995 * 109.46944 * 67.02973 * 7 6 5 39 39 H 1.09000 * 109.47033 * 187.03324 * 7 6 5 40 40 H 1.08997 * 109.47101 * 42.51856 * 8 5 4 41 41 H 1.09000 * 109.47083 * 282.52099 * 8 5 4 42 42 H 0.96701 * 114.00166 * 60.00201 * 11 9 8 43 43 H 1.09000 * 109.47138 * 54.99920 * 12 9 8 44 44 H 1.08999 * 109.47399 * 294.99753 * 12 9 8 45 45 H 1.08008 * 119.90635 * 0.02562 * 15 14 13 46 46 H 1.08002 * 120.10105 * 180.25377 * 16 15 14 47 47 H 0.97005 * 119.99845 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.09428 * 179.97438 * 26 17 16 49 49 H 1.08000 * 119.90767 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4543 -1.6443 -1.3754 6 6 3.4563 -2.7185 -1.3881 7 6 4.7087 -2.2565 -0.6404 8 6 1.2815 -2.0089 -2.1812 9 6 1.6389 -1.9303 -3.6668 10 1 2.0610 -0.9498 -3.8875 11 8 2.5970 -2.9430 -3.9805 12 6 0.3780 -2.1434 -4.5067 13 8 0.6886 -1.9548 -5.8888 14 6 -0.3269 -2.1091 -6.7751 15 6 -1.6001 -2.4426 -6.3185 16 6 -2.6280 -2.5947 -7.2027 17 6 -2.3965 -2.4243 -8.5814 18 6 -3.4533 -2.5858 -9.5039 19 1 -4.4683 -2.3680 -9.2059 20 6 -3.1857 -3.0279 -10.8039 21 7 -2.0067 -3.5128 -11.1004 22 14 -4.5108 -2.9262 -12.1165 23 1 -4.4212 -1.6161 -12.8099 24 1 -4.3179 -4.0214 -13.1006 25 1 -5.8470 -3.0602 -11.4824 26 6 -1.1052 -2.0925 -9.0351 27 6 -0.0895 -1.9384 -8.1372 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 2.1667 1.6651 -1.0237 31 1 1.5166 2.0404 0.5901 32 1 3.0521 1.1540 0.4334 33 1 1.4261 -2.0928 0.4009 34 1 2.9562 -1.2095 0.6178 35 1 3.0471 -3.6029 -0.8996 36 1 3.7167 -2.9603 -2.4185 37 1 5.0461 -1.3045 -1.0503 38 1 4.4760 -2.1346 0.4174 39 1 5.4962 -3.0013 -0.7558 40 1 0.4649 -1.3195 -1.9670 41 1 0.9731 -3.0250 -1.9351 42 1 2.2885 -3.8432 -3.8085 43 1 -0.3853 -1.4263 -4.2048 44 1 0.0059 -3.1564 -4.3530 45 1 -1.7750 -2.5768 -5.2611 46 1 -3.6154 -2.8492 -6.8468 47 1 -1.8210 -3.8191 -12.0018 48 1 -0.9193 -1.9605 -10.0908 49 1 0.9014 -1.6844 -8.4834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072702236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:42 Heat of formation + Delta-G solvation = -67.742255 kcal Electronic energy + Delta-G solvation = -26449.584096 eV Core-core repulsion = 22762.415373 eV Total energy + Delta-G solvation = -3687.168723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76214 -39.88080 -38.36437 -37.35517 -35.43969 -35.13663 -32.68852 -31.70056 -30.97516 -30.31379 -28.12298 -27.86412 -26.61499 -25.30131 -23.39404 -22.54806 -22.21247 -21.89338 -19.45902 -19.23382 -18.70982 -17.67860 -17.48386 -17.05937 -16.62404 -16.34595 -15.88584 -15.74921 -15.67589 -15.28561 -15.06950 -14.84267 -14.70538 -14.25255 -14.05794 -13.92683 -13.85782 -13.59476 -13.42520 -13.06870 -12.82032 -12.79824 -12.66642 -12.61711 -12.43494 -12.39370 -12.34432 -12.00090 -11.91896 -11.70758 -11.65035 -11.57885 -11.16836 -10.93445 -10.67576 -9.99529 -9.56981 -9.23320 -8.86521 -8.55208 -6.25160 0.94514 1.01807 1.26303 1.40197 1.51655 1.53678 2.24104 2.38790 2.75955 3.13349 3.42820 3.68270 3.84653 3.95345 3.99365 4.02992 4.04612 4.24364 4.28262 4.29723 4.35352 4.44169 4.46124 4.55538 4.61017 4.70152 4.77772 4.78927 4.86394 4.89536 5.03137 5.05813 5.05983 5.08386 5.18047 5.20871 5.29531 5.32349 5.36844 5.57383 5.64835 5.70149 5.86988 5.89361 6.06530 6.13991 6.17447 6.26375 6.56781 6.75579 6.82023 6.96670 7.09262 8.42265 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025063 B = 0.002216 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.917528 B =12630.250740 C =13299.060304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.083 3.917 5 N -0.534 5.534 6 C 0.032 3.968 7 C -0.145 4.145 8 C 0.033 3.967 9 C 0.131 3.869 10 H 0.096 0.904 11 O -0.559 6.559 12 C 0.032 3.968 13 O -0.330 6.330 14 C 0.008 3.992 15 C -0.168 4.168 16 C -0.201 4.201 17 C 0.053 3.947 18 C -0.500 4.500 19 H 0.076 0.924 20 C 0.029 3.971 21 N -0.841 5.841 22 Si 0.985 3.015 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.144 4.144 27 C -0.138 4.138 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.092 0.908 35 H 0.032 0.968 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.382 0.618 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.107 0.893 47 H 0.285 0.715 48 H 0.108 0.892 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 2.769 21.660 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.122 4.122 3 C -0.168 4.168 4 C -0.044 4.044 5 N -0.258 5.258 6 C -0.095 4.095 7 C -0.203 4.203 8 C -0.096 4.096 9 C 0.071 3.929 10 H 0.113 0.887 11 O -0.366 6.366 12 C -0.044 4.044 13 O -0.246 6.246 14 C -0.036 4.036 15 C -0.187 4.187 16 C -0.221 4.221 17 C 0.051 3.949 18 C -0.531 4.531 19 H 0.094 0.906 20 C -0.183 4.183 21 N -0.469 5.469 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.163 4.163 27 C -0.156 4.156 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.231 0.769 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.147 0.853 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.126 0.874 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.712 3.623 21.078 23.093 hybrid contribution -1.478 -1.277 -0.261 1.971 sum 7.234 2.345 20.817 22.163 Atomic orbital electron populations 1.23847 0.95342 1.02336 1.02171 1.21794 0.95239 0.96075 0.99123 1.20767 1.00111 0.93984 1.01936 1.21300 0.99572 0.93748 0.89778 1.61875 1.11386 1.41354 1.11186 1.22569 0.92349 0.91258 1.03348 1.21793 0.96884 1.01797 0.99787 1.22613 0.93952 1.00931 0.92078 1.21747 0.86937 0.92846 0.91378 0.88654 1.86588 1.42286 1.18570 1.89115 1.23472 0.99119 1.01560 0.80298 1.85888 1.34729 1.87618 1.16320 1.18720 0.87408 1.08373 0.89102 1.20701 0.92358 1.06189 0.99416 1.20871 0.98509 1.09250 0.93452 1.17957 0.93543 0.90778 0.92586 1.19689 0.94877 1.42015 0.96512 0.90628 1.26728 0.98667 0.91750 1.01166 1.69876 1.23962 1.30993 1.22068 0.85164 0.78418 0.78851 0.76992 1.18822 1.19518 1.18221 1.20901 0.93551 1.03420 0.98443 1.20019 0.98970 1.05843 0.90807 0.87813 0.88415 0.92056 0.91364 0.91589 0.94168 0.88968 0.94993 0.88288 0.92740 0.92383 0.91505 0.89026 0.93024 0.76887 0.91369 0.91794 0.85296 0.87472 0.90426 0.87386 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 12.40 67.78 0.84 -2.17 16 2 C -0.12 -1.91 5.08 -16.49 -0.08 -1.99 16 3 C -0.11 -1.61 10.02 71.24 0.71 -0.89 16 4 C 0.08 1.26 4.99 85.56 0.43 1.69 16 5 N -0.53 -9.53 4.45 -900.81 -4.01 -13.54 16 6 C 0.03 0.53 5.41 86.30 0.47 0.99 16 7 C -0.15 -2.07 9.53 71.98 0.69 -1.39 16 8 C 0.03 0.60 4.63 86.30 0.40 1.00 16 9 C 0.13 3.12 3.45 30.59 0.11 3.23 16 10 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 11 O -0.56 -13.68 10.28 -144.34 -1.48 -15.16 16 12 C 0.03 0.91 4.36 71.98 0.31 1.22 16 13 O -0.33 -13.17 10.09 -85.26 -0.86 -14.03 16 14 C 0.01 0.36 6.71 22.79 0.15 0.51 16 15 C -0.17 -7.34 8.96 22.11 0.20 -7.14 16 16 C -0.20 -9.86 9.74 22.48 0.22 -9.65 16 17 C 0.05 2.93 5.54 -21.28 -0.12 2.82 16 18 C -0.50 -27.36 9.04 23.40 0.21 -27.15 16 19 H 0.08 3.96 7.87 -2.91 -0.02 3.94 16 20 C 0.03 1.51 5.22 85.24 0.45 1.95 16 21 N -0.84 -45.31 10.95 21.82 0.24 -45.07 16 22 Si 0.98 39.09 29.58 68.60 2.03 41.11 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 C -0.14 -7.83 8.60 22.49 0.19 -7.63 16 27 C -0.14 -6.86 9.92 22.11 0.22 -6.64 16 28 H 0.10 1.46 8.05 -2.91 -0.02 1.44 16 29 H 0.10 1.39 7.86 -2.91 -0.02 1.36 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 32 H 0.07 0.86 8.06 -2.39 -0.02 0.85 16 33 H 0.04 0.59 7.90 -2.39 -0.02 0.57 16 34 H 0.09 1.26 5.83 -2.39 -0.01 1.25 16 35 H 0.03 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.10 1.94 5.15 -2.39 -0.01 1.93 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.71 6.52 -2.39 -0.02 0.69 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 1.66 5.79 -2.39 -0.01 1.65 16 41 H 0.05 0.83 8.03 -2.39 -0.02 0.81 16 42 H 0.38 6.82 9.05 -74.06 -0.67 6.15 16 43 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 44 H 0.06 1.68 7.63 -2.39 -0.02 1.66 16 45 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 46 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 47 H 0.29 13.96 8.30 -92.70 -0.77 13.19 16 48 H 0.11 6.13 6.31 -2.91 -0.02 6.11 16 49 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -63.31 391.47 1.57 -61.75 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.26 Total: 36.17 kcal Atomic # 6 Polarization: -56.63 SS G_CDS: 5.39 Total: -51.24 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -3.77 Total: -58.61 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -2.34 Total: -29.19 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.11 kcal Total: -63.31 1.57 -61.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072702236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.995 kcal (2) G-P(sol) polarization free energy of solvation -63.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds