Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.46955 * 2 1 4 4 C 1.36003 * 116.99903 * 180.02562 * 3 2 1 5 5 C 1.38564 * 120.07291 * 359.95029 * 4 3 2 6 6 C 1.38243 * 120.00127 * 180.02562 * 5 4 3 7 7 C 1.38253 * 120.14310 * 359.97438 * 6 5 4 8 8 C 1.38242 * 120.14858 * 0.02774 * 7 6 5 9 9 C 1.38560 * 119.99873 * 359.97438 * 8 7 6 10 10 O 1.35998 * 120.07565 * 180.02562 * 9 8 7 11 11 C 1.42907 * 116.99704 * 359.97438 * 10 9 8 12 12 C 1.52990 * 109.47130 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47392 * 64.99891 * 12 11 10 14 14 C 1.46901 * 111.00162 * 189.99798 * 13 12 11 15 15 C 1.50702 * 109.47108 * 75.56405 * 14 13 12 16 16 H 1.08003 * 119.99417 * 355.77188 * 15 14 13 17 17 C 1.37869 * 120.00268 * 175.77004 * 15 14 13 18 18 N 1.31516 * 120.00083 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00117 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47503 * 90.00009 * 19 17 15 21 21 H 1.48502 * 109.47339 * 210.00089 * 19 17 15 22 22 H 1.48500 * 109.47361 * 329.99526 * 19 17 15 23 23 C 1.46901 * 110.99720 * 66.04962 * 13 12 11 24 24 C 1.53006 * 109.46943 * 195.52910 * 23 13 12 25 25 C 1.53006 * 117.49399 * 244.13790 * 24 23 13 26 26 C 1.53000 * 117.49777 * 175.51763 * 24 23 13 27 27 H 1.08996 * 109.47258 * 300.00230 * 1 2 3 28 28 H 1.09000 * 109.47068 * 60.00148 * 1 2 3 29 29 H 1.08999 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47258 * 239.99770 * 2 1 3 31 31 H 1.09000 * 109.47068 * 119.99852 * 2 1 3 32 32 H 1.08004 * 119.99788 * 0.04720 * 5 4 3 33 33 H 1.07992 * 119.92448 * 180.28054 * 6 5 4 34 34 H 1.08001 * 119.92501 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.99814 * 179.97438 * 8 7 6 36 36 H 1.09003 * 109.46903 * 300.00713 * 11 10 9 37 37 H 1.08997 * 109.46760 * 59.99838 * 11 10 9 38 38 H 1.08997 * 109.47124 * 185.00135 * 12 11 10 39 39 H 1.09001 * 109.47062 * 305.00112 * 12 11 10 40 40 H 1.09000 * 109.47424 * 195.56283 * 14 13 12 41 41 H 1.09002 * 109.47421 * 315.56543 * 14 13 12 42 42 H 0.96998 * 120.00110 * 179.97438 * 18 17 15 43 43 H 1.09003 * 109.47182 * 315.52116 * 23 13 12 44 44 H 1.08991 * 109.47498 * 75.52334 * 23 13 12 45 45 H 1.08993 * 115.54959 * 29.84148 * 24 23 13 46 46 H 1.08997 * 117.50117 * 0.02562 * 25 24 23 47 47 H 1.09001 * 117.49244 * 145.01780 * 25 24 23 48 48 H 1.08997 * 117.49512 * 214.97185 * 26 24 23 49 49 H 1.08996 * 117.50109 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.2000 0.4277 0.0000 6 6 5.5703 0.6105 0.0000 7 6 6.1003 1.8874 -0.0011 8 6 5.2624 2.9870 -0.0016 9 6 3.8881 2.8106 -0.0015 10 8 3.0623 3.8912 -0.0025 11 6 3.6802 5.1798 -0.0030 12 6 2.6000 6.2633 -0.0035 13 7 1.8397 6.1974 1.2517 14 6 0.6502 7.0573 1.1925 15 6 -0.4049 6.3974 0.3424 16 1 -0.1871 5.4688 -0.1642 17 6 -1.6480 6.9792 0.2115 18 7 -1.9129 8.1102 0.8281 19 14 -2.9559 6.1609 -0.8416 20 1 -3.7544 5.2297 -0.0045 21 1 -3.8488 7.1986 -1.4170 22 1 -2.3045 5.4038 -1.9405 23 6 2.6867 6.5489 2.3993 24 6 2.0018 6.1054 3.6936 25 6 1.5857 7.1964 4.6823 26 6 2.7753 6.2885 5.0008 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7885 -0.5709 0.0000 33 1 6.2281 -0.2459 -0.0042 34 1 7.1714 2.0262 -0.0015 35 1 5.6791 3.9833 -0.0020 36 1 4.3003 5.2857 0.8871 37 1 4.3009 5.2847 -0.8928 38 1 3.0685 7.2433 -0.0935 39 1 1.9261 6.1041 -0.8453 40 1 0.2620 7.2104 2.1994 41 1 0.9187 8.0195 0.7564 42 1 -2.7874 8.5197 0.7356 43 1 3.6498 6.0466 2.3074 44 1 2.8402 7.6277 2.4206 45 1 1.3572 5.2306 3.6084 46 1 1.7996 8.2301 4.4105 47 1 0.6672 7.0394 5.2477 48 1 2.6394 5.5343 5.7759 49 1 3.7720 6.7253 4.9389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514559.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = -37.313347 kcal Electronic energy + Delta-G solvation = -27428.586908 eV Core-core repulsion = 23742.737681 eV Total energy + Delta-G solvation = -3685.849227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41064 -39.83250 -39.01219 -37.78767 -36.82332 -34.66554 -32.80366 -31.44520 -31.01196 -29.72581 -29.33212 -26.68866 -25.18004 -24.14783 -23.17778 -23.16060 -22.69658 -21.77886 -20.95856 -19.61499 -18.55421 -18.19700 -17.41598 -17.19683 -16.95181 -16.57727 -16.39161 -15.77848 -15.67644 -15.60662 -15.29144 -15.14803 -14.61132 -14.32007 -14.07321 -13.89788 -13.71341 -13.43869 -13.35811 -13.25639 -12.89897 -12.76352 -12.73467 -12.55091 -12.45346 -12.35913 -12.25927 -12.04840 -11.85244 -11.70693 -11.61088 -11.58178 -11.40081 -11.07304 -10.65983 -10.54608 -9.63903 -8.93524 -8.68148 -8.17115 -6.25206 0.38886 0.56342 1.37190 1.38850 1.50554 2.35513 2.40120 2.41345 2.85125 2.92364 3.13327 3.26008 3.82403 3.91674 3.98176 4.02852 4.06013 4.09057 4.10746 4.20079 4.23512 4.26956 4.34289 4.38559 4.48708 4.51311 4.56756 4.61576 4.68991 4.76983 4.79223 4.83431 4.89534 4.92233 4.97402 5.03215 5.20251 5.21074 5.26098 5.33159 5.33490 5.41621 5.42094 5.59739 5.70360 5.87569 6.12886 6.29662 6.43465 6.69500 6.82620 6.90524 7.43227 8.92865 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.004500 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.058530 B = 6220.514114 C = 7908.876746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.338 6.338 4 C 0.069 3.931 5 C -0.176 4.176 6 C -0.122 4.122 7 C -0.117 4.117 8 C -0.182 4.182 9 C 0.073 3.927 10 O -0.314 6.314 11 C 0.073 3.927 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.214 3.786 15 C -0.514 4.514 16 H 0.050 0.950 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.960 3.040 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.271 1.271 23 C 0.088 3.912 24 C -0.156 4.156 25 C -0.189 4.189 26 C -0.148 4.148 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.015 0.985 41 H -0.039 1.039 42 H 0.263 0.737 43 H 0.086 0.914 44 H 0.023 0.977 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.273 -14.994 0.790 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.254 6.254 4 C 0.023 3.977 5 C -0.194 4.194 6 C -0.140 4.140 7 C -0.135 4.135 8 C -0.201 4.201 9 C 0.027 3.973 10 O -0.228 6.228 11 C -0.002 4.002 12 C -0.067 4.067 13 N -0.261 5.261 14 C 0.087 3.913 15 C -0.553 4.553 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.573 5.573 19 Si 0.785 3.215 20 H -0.201 1.201 21 H -0.203 1.203 22 H -0.196 1.196 23 C -0.040 4.040 24 C -0.175 4.175 25 C -0.226 4.226 26 C -0.186 4.186 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.033 0.967 41 H -0.022 1.022 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.041 0.959 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.124 0.876 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.597 -15.189 0.865 22.515 hybrid contribution -0.952 0.928 -0.597 1.457 sum 15.645 -14.261 0.269 21.172 Atomic orbital electron populations 1.21813 0.92766 1.03978 1.02407 1.22993 0.96172 0.81085 1.02272 1.86254 1.19059 1.30885 1.89153 1.18737 0.83391 0.92231 1.03304 1.21349 0.94584 0.97306 1.06169 1.21228 0.93905 0.98385 1.00517 1.21235 1.00817 0.91482 0.99964 1.21346 0.90241 1.01838 1.06629 1.18901 0.90392 0.85867 1.02093 1.86362 1.34665 1.13335 1.88480 1.22967 0.95009 0.80314 1.01927 1.22020 0.95294 0.95727 0.93672 1.61966 1.07073 1.55080 1.01984 1.19338 0.87452 0.88729 0.95733 1.21437 0.97614 1.07555 1.28661 0.93168 1.25767 1.00498 0.95571 0.97370 1.70070 1.23020 1.19324 1.44909 0.85532 0.78786 0.78200 0.79005 1.20055 1.20275 1.19571 1.21687 0.95880 0.96904 0.89517 1.22129 1.03931 1.00612 0.90831 1.22980 0.99661 0.96009 1.03986 1.23021 0.96302 1.02045 0.97193 0.93134 0.92965 0.87298 0.90608 0.90793 0.83012 0.82544 0.82690 0.83548 0.90829 0.89896 0.92476 0.92067 0.96700 1.02183 0.92816 0.89591 0.95932 0.90080 0.89488 0.89621 0.87613 0.87164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 10.28 71.98 0.74 -2.78 16 2 C 0.05 1.17 5.46 71.98 0.39 1.56 16 3 O -0.34 -11.89 9.92 -79.72 -0.79 -12.68 16 4 C 0.07 2.16 6.70 22.57 0.15 2.32 16 5 C -0.18 -3.97 9.04 22.35 0.20 -3.77 16 6 C -0.12 -2.22 10.04 22.27 0.22 -2.00 16 7 C -0.12 -2.20 10.04 22.27 0.22 -1.98 16 8 C -0.18 -4.43 9.04 22.35 0.20 -4.23 16 9 C 0.07 2.40 6.70 22.57 0.15 2.55 16 10 O -0.31 -12.30 9.87 -79.67 -0.79 -13.09 16 11 C 0.07 2.32 4.82 71.98 0.35 2.66 16 12 C 0.06 2.42 5.17 86.30 0.45 2.86 16 13 N -0.54 -24.50 4.33 -900.80 -3.90 -28.40 16 14 C 0.21 11.87 4.59 85.56 0.39 12.27 16 15 C -0.51 -31.11 8.60 25.60 0.22 -30.89 16 16 H 0.05 3.13 7.66 -2.91 -0.02 3.11 16 17 C 0.01 0.33 5.46 84.65 0.46 0.80 16 18 N -0.93 -57.87 13.29 21.44 0.28 -57.59 16 19 Si 0.96 47.12 29.54 68.60 2.03 49.14 16 20 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.09 3.28 5.11 86.30 0.44 3.72 16 24 C -0.16 -5.75 4.96 -10.79 -0.05 -5.81 16 25 C -0.19 -6.36 9.97 30.60 0.31 -6.06 16 26 C -0.15 -4.03 10.25 30.60 0.31 -3.72 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 31 H 0.07 1.45 7.66 -2.39 -0.02 1.43 16 32 H 0.15 2.58 6.30 -2.91 -0.02 2.56 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.15 2.95 6.30 -2.91 -0.02 2.93 16 36 H 0.07 2.04 5.63 -2.39 -0.01 2.02 16 37 H 0.08 2.12 7.66 -2.39 -0.02 2.10 16 38 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 39 H 0.06 2.80 7.32 -2.39 -0.02 2.78 16 40 H 0.01 0.89 6.93 -2.39 -0.02 0.87 16 41 H -0.04 -2.33 8.00 -2.39 -0.02 -2.35 16 42 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.09 2.73 5.88 -2.39 -0.01 2.71 16 44 H 0.02 0.84 7.79 -2.39 -0.02 0.82 16 45 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 46 H 0.09 2.93 8.03 -2.39 -0.02 2.91 16 47 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -76.09 396.86 2.91 -73.18 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.92 Total: 21.93 kcal Atomic # 6 Polarization: -37.65 SS G_CDS: 5.16 Total: -32.49 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -3.62 Total: -85.99 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -1.58 Total: -25.77 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -76.09 2.91 -73.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514559.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.866 kcal (2) G-P(sol) polarization free energy of solvation -76.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds