Wall clock time and date at job start Tue Mar 31 2020 13:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47224 * 2 1 4 4 C 1.34779 * 120.00273 * 84.52002 * 3 2 1 5 5 O 1.21278 * 120.00182 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.99651 * 0.02562 * 4 3 2 7 7 C 1.50698 * 109.46712 * 179.97438 * 6 4 3 8 8 C 1.38322 * 119.96624 * 269.72089 * 7 6 4 9 9 C 1.38278 * 120.14018 * 180.28048 * 8 7 6 10 10 C 1.38119 * 120.06908 * 0.02562 * 9 8 7 11 11 C 1.38853 * 119.92929 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.06784 * 179.97438 * 11 10 9 13 13 C 1.34827 * 117.00090 * 354.37188 * 12 11 10 14 14 H 1.08001 * 120.00110 * 5.07432 * 13 12 11 15 15 C 1.38659 * 120.00320 * 185.07081 * 13 12 11 16 16 N 1.31560 * 119.99597 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00220 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47184 * 119.99947 * 17 15 13 20 20 H 1.48499 * 109.46941 * 239.99886 * 17 15 13 21 21 C 1.38079 * 119.96528 * 90.00185 * 7 6 4 22 22 C 1.46499 * 120.00095 * 264.52109 * 3 2 1 23 23 H 1.09000 * 109.47661 * 184.62871 * 22 3 2 24 24 C 1.53007 * 109.46840 * 64.63485 * 22 3 2 25 25 C 1.52993 * 109.47125 * 304.63683 * 22 3 2 26 26 C 1.53006 * 109.47272 * 184.93497 * 25 22 3 27 27 C 1.52999 * 109.47061 * 304.93172 * 25 22 3 28 28 H 1.09001 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47206 * 300.00493 * 1 2 3 30 30 H 1.09002 * 109.47246 * 60.00390 * 1 2 3 31 31 H 1.09004 * 109.46744 * 239.99544 * 2 1 3 32 32 H 1.09004 * 109.46697 * 120.00135 * 2 1 3 33 33 H 1.08996 * 109.47241 * 59.99540 * 6 4 3 34 34 H 1.08995 * 109.46799 * 299.99331 * 6 4 3 35 35 H 1.08004 * 119.93101 * 0.25421 * 8 7 6 36 36 H 1.08004 * 119.96453 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.03542 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99644 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03748 * 359.69603 * 21 7 6 40 40 H 1.08992 * 109.47378 * 60.00420 * 24 22 3 41 41 H 1.09001 * 109.46956 * 180.02562 * 24 22 3 42 42 H 1.09000 * 109.47106 * 299.99656 * 24 22 3 43 43 H 1.09001 * 109.47808 * 64.93525 * 25 22 3 44 44 H 1.09003 * 109.47207 * 184.77753 * 26 25 22 45 45 H 1.09000 * 109.46986 * 304.78014 * 26 25 22 46 46 H 1.09003 * 109.47117 * 64.77380 * 26 25 22 47 47 H 1.09003 * 109.46732 * 60.00095 * 27 25 22 48 48 H 1.09003 * 109.47223 * 180.02562 * 27 25 22 49 49 H 1.08997 * 109.47377 * 300.00357 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1379 2.0537 1.1619 5 8 2.5426 3.1970 1.1619 6 6 1.7698 1.3846 2.4611 7 6 1.9936 2.3442 3.6013 8 6 3.2190 2.3825 4.2417 9 6 3.4265 3.2575 5.2921 10 6 2.4098 4.0960 5.7054 11 6 1.1785 4.0601 5.0646 12 8 0.1770 4.8826 5.4688 13 6 0.4028 5.6264 6.5704 14 1 1.3749 5.6132 7.0410 15 6 -0.6128 6.4083 7.0993 16 7 -1.7967 6.4248 6.5257 17 14 -0.2997 7.4393 8.6252 18 1 1.1027 7.2465 9.0736 19 1 -0.5263 8.8725 8.3093 20 1 -1.2268 7.0180 9.7060 21 6 0.9733 3.1803 4.0094 22 6 2.3767 2.0314 -1.2629 23 1 2.7931 3.0178 -1.0585 24 6 1.1276 2.1759 -2.1346 25 6 3.4155 1.1815 -1.9973 26 6 3.8808 1.9186 -3.2548 27 6 4.6137 0.9340 -1.0785 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3912 0.5005 2.6034 34 1 0.7205 1.0907 2.4338 35 1 4.0154 1.7272 3.9209 36 1 4.3843 3.2847 5.7904 37 1 2.5723 4.7790 6.5261 38 1 -2.5071 6.9721 6.8955 39 1 0.0169 3.1503 3.5088 40 1 0.3875 2.7813 -1.6115 41 1 1.3943 2.6592 -3.0744 42 1 0.7112 1.1895 -2.3391 43 1 2.9707 0.2272 -2.2793 44 1 4.5563 1.2784 -3.8222 45 1 3.0164 2.1700 -3.8693 46 1 4.4012 2.8326 -2.9685 47 1 4.2822 0.4089 -0.1827 48 1 5.3540 0.3289 -1.6019 49 1 5.0586 1.8883 -0.7966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089783675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:19 Heat of formation + Delta-G solvation = -51.356769 kcal Electronic energy + Delta-G solvation = -27299.502003 eV Core-core repulsion = 23613.043808 eV Total energy + Delta-G solvation = -3686.458195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.38056 -38.90104 -37.42262 -36.27051 -34.86176 -32.32494 -31.92030 -30.81298 -30.00467 -29.10048 -27.49015 -26.70651 -25.19098 -23.65916 -23.54295 -21.60666 -21.13505 -20.01340 -18.94981 -17.58642 -17.19531 -16.83937 -16.21453 -15.65663 -14.99218 -14.77442 -14.61925 -14.33572 -14.13856 -13.96485 -13.81230 -13.43168 -13.32694 -13.25010 -13.09737 -12.67602 -12.50689 -12.45342 -12.29935 -12.29656 -12.16268 -11.85637 -11.66342 -11.44741 -11.23849 -11.17815 -11.03571 -10.96095 -10.78366 -10.69671 -10.64179 -10.52904 -10.37823 -9.55913 -9.26072 -8.77619 -8.66811 -7.97886 -7.13888 -6.37930 -3.96669 2.17245 2.47124 2.83279 3.01301 3.17206 3.17899 3.23622 4.02320 4.36713 4.58555 4.65228 4.70393 4.81473 4.88509 5.01456 5.05636 5.15177 5.16816 5.20755 5.24629 5.25955 5.37373 5.41906 5.48215 5.53712 5.57922 5.63825 5.65638 5.68320 5.74266 5.79653 5.80468 5.85936 6.00774 6.01350 6.07500 6.09671 6.18887 6.25546 6.41673 6.59302 6.74172 6.99760 7.14941 7.35183 7.41831 7.45077 7.51867 7.91015 8.07620 8.37921 9.08110 9.79923 10.80600 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002729 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.057179 B =10257.471189 C =10568.046647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 N -0.613 5.613 4 C 0.518 3.482 5 O -0.519 6.519 6 C -0.093 4.093 7 C -0.032 4.032 8 C -0.196 4.196 9 C -0.075 4.075 10 C -0.231 4.231 11 C 0.155 3.845 12 O -0.181 6.181 13 C -0.389 4.389 14 H 0.092 0.908 15 C 0.038 3.962 16 N -0.865 5.865 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.174 4.174 22 C 0.139 3.861 23 H 0.100 0.900 24 C -0.164 4.164 25 C -0.103 4.103 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.268 0.732 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -15.184 -16.338 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.019 4.019 3 N -0.348 5.348 4 C 0.306 3.694 5 O -0.393 6.393 6 C -0.133 4.133 7 C -0.033 4.033 8 C -0.215 4.215 9 C -0.093 4.093 10 C -0.251 4.251 11 C 0.102 3.898 12 O -0.085 6.085 13 C -0.466 4.466 14 H 0.109 0.891 15 C -0.166 4.166 16 N -0.501 5.501 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.194 4.194 22 C 0.036 3.964 23 H 0.118 0.882 24 C -0.222 4.222 25 C -0.123 4.123 26 C -0.205 4.205 27 C -0.201 4.201 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.956 -14.383 -16.370 23.198 hybrid contribution 0.109 0.444 0.749 0.877 sum 8.066 -13.939 -15.621 22.436 Atomic orbital electron populations 1.22383 0.95893 1.02288 1.03197 1.21511 0.94492 0.82832 1.03041 1.48050 1.66466 1.14049 1.06202 1.20726 0.77263 0.86518 0.84889 1.90737 1.44427 1.17526 1.86609 1.20677 1.03555 0.98331 0.90745 1.18691 0.93832 0.96107 0.94625 1.20334 0.96473 1.04096 1.00616 1.20669 0.97515 0.95064 0.96062 1.21167 0.94092 1.04747 1.05047 1.19271 0.88363 0.89409 0.92756 1.83976 1.35420 1.47181 1.41880 1.21363 0.99092 1.22906 1.03208 0.89105 1.25273 0.94499 0.97736 0.99085 1.70056 1.02205 1.38431 1.39358 0.85657 0.78714 0.79141 0.79968 1.19135 1.20202 1.20207 1.19931 0.99590 0.99470 1.00362 1.21078 0.94380 0.97886 0.83070 0.88164 1.22272 0.97989 1.02066 0.99834 1.21446 0.96036 0.99109 0.95685 1.21867 1.01282 1.00562 0.96782 1.21783 0.97148 1.01933 0.99276 0.91637 0.91914 0.91893 0.90263 0.90475 0.88635 0.88357 0.88045 0.87534 0.85649 0.92199 0.86958 0.92116 0.91535 0.92292 0.91115 0.92568 0.92238 0.92382 0.92557 0.92971 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 9.96 37.16 0.37 -1.00 16 2 C 0.10 0.81 4.92 -4.05 -0.02 0.79 16 3 N -0.61 -6.76 1.48 -166.11 -0.25 -7.01 16 4 C 0.52 7.81 7.63 -10.98 -0.08 7.73 16 5 O -0.52 -10.36 15.37 5.56 0.09 -10.28 16 6 C -0.09 -1.31 4.44 -29.03 -0.13 -1.44 16 7 C -0.03 -0.60 4.37 -104.65 -0.46 -1.06 16 8 C -0.20 -3.66 9.70 -39.54 -0.38 -4.04 16 9 C -0.07 -1.48 10.04 -39.61 -0.40 -1.88 16 10 C -0.23 -5.35 9.17 -39.40 -0.36 -5.71 16 11 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 12 O -0.18 -5.38 9.76 0.05 0.00 -5.38 16 13 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 14 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 15 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 16 N -0.86 -26.05 13.67 55.48 0.76 -25.29 16 17 Si 0.94 21.13 29.55 -169.99 -5.02 16.11 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 C -0.17 -3.93 9.65 -39.39 -0.38 -4.31 16 22 C 0.14 1.45 2.22 -67.93 -0.15 1.30 16 23 H 0.10 1.35 6.91 -51.93 -0.36 0.99 16 24 C -0.16 -1.46 8.25 37.16 0.31 -1.15 16 25 C -0.10 -0.84 2.13 -90.62 -0.19 -1.03 16 26 C -0.15 -1.06 9.05 37.16 0.34 -0.72 16 27 C -0.14 -1.29 8.98 37.16 0.33 -0.96 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 30 H 0.06 0.50 6.00 -51.93 -0.31 0.18 16 31 H 0.08 0.49 6.30 -51.93 -0.33 0.16 16 32 H 0.08 0.52 6.67 -51.93 -0.35 0.18 16 33 H 0.10 1.06 7.35 -51.93 -0.38 0.68 16 34 H 0.10 1.23 6.45 -51.93 -0.34 0.89 16 35 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 36 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.51 6.46 -51.93 -0.34 0.18 16 42 H 0.06 0.44 6.45 -51.93 -0.34 0.11 16 43 H 0.07 0.49 6.73 -51.93 -0.35 0.15 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -34.35 384.87 -7.53 -41.88 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.63 Total: 3.96 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.27 Total: -19.80 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.51 Total: -32.29 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.66 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.35 -7.53 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.479 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds