Wall clock time and date at job start Tue Mar 31 2020 13:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47224 * 2 1 4 4 C 1.34779 * 120.00273 * 84.52002 * 3 2 1 5 5 O 1.21278 * 120.00182 * 179.97438 * 4 3 2 6 6 C 1.50707 * 119.99651 * 0.02562 * 4 3 2 7 7 C 1.50698 * 109.46712 * 179.97438 * 6 4 3 8 8 C 1.38322 * 119.96624 * 269.72089 * 7 6 4 9 9 C 1.38278 * 120.14018 * 180.28048 * 8 7 6 10 10 C 1.38119 * 120.06908 * 0.02562 * 9 8 7 11 11 C 1.38853 * 119.92929 * 359.97438 * 10 9 8 12 12 O 1.35751 * 120.06784 * 179.97438 * 11 10 9 13 13 C 1.34827 * 117.00090 * 354.37188 * 12 11 10 14 14 H 1.08001 * 120.00110 * 5.07432 * 13 12 11 15 15 C 1.38659 * 120.00320 * 185.07081 * 13 12 11 16 16 N 1.31560 * 119.99597 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00220 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47184 * 119.99947 * 17 15 13 20 20 H 1.48499 * 109.46941 * 239.99886 * 17 15 13 21 21 C 1.38079 * 119.96528 * 90.00185 * 7 6 4 22 22 C 1.46499 * 120.00095 * 264.52109 * 3 2 1 23 23 H 1.09000 * 109.47661 * 184.62871 * 22 3 2 24 24 C 1.53007 * 109.46840 * 64.63485 * 22 3 2 25 25 C 1.52993 * 109.47125 * 304.63683 * 22 3 2 26 26 C 1.53006 * 109.47272 * 184.93497 * 25 22 3 27 27 C 1.52999 * 109.47061 * 304.93172 * 25 22 3 28 28 H 1.09001 * 109.47483 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47206 * 300.00493 * 1 2 3 30 30 H 1.09002 * 109.47246 * 60.00390 * 1 2 3 31 31 H 1.09004 * 109.46744 * 239.99544 * 2 1 3 32 32 H 1.09004 * 109.46697 * 120.00135 * 2 1 3 33 33 H 1.08996 * 109.47241 * 59.99540 * 6 4 3 34 34 H 1.08995 * 109.46799 * 299.99331 * 6 4 3 35 35 H 1.08004 * 119.93101 * 0.25421 * 8 7 6 36 36 H 1.08004 * 119.96453 * 179.97438 * 9 8 7 37 37 H 1.08006 * 120.03542 * 179.97438 * 10 9 8 38 38 H 0.97001 * 119.99644 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.03748 * 359.69603 * 21 7 6 40 40 H 1.08992 * 109.47378 * 60.00420 * 24 22 3 41 41 H 1.09001 * 109.46956 * 180.02562 * 24 22 3 42 42 H 1.09000 * 109.47106 * 299.99656 * 24 22 3 43 43 H 1.09001 * 109.47808 * 64.93525 * 25 22 3 44 44 H 1.09003 * 109.47207 * 184.77753 * 26 25 22 45 45 H 1.09000 * 109.46986 * 304.78014 * 26 25 22 46 46 H 1.09003 * 109.47117 * 64.77380 * 26 25 22 47 47 H 1.09003 * 109.46732 * 60.00095 * 27 25 22 48 48 H 1.09003 * 109.47223 * 180.02562 * 27 25 22 49 49 H 1.08997 * 109.47377 * 300.00357 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1379 2.0537 1.1619 5 8 2.5426 3.1970 1.1619 6 6 1.7698 1.3846 2.4611 7 6 1.9936 2.3442 3.6013 8 6 3.2190 2.3825 4.2417 9 6 3.4265 3.2575 5.2921 10 6 2.4098 4.0960 5.7054 11 6 1.1785 4.0601 5.0646 12 8 0.1770 4.8826 5.4688 13 6 0.4028 5.6264 6.5704 14 1 1.3749 5.6132 7.0410 15 6 -0.6128 6.4083 7.0993 16 7 -1.7967 6.4248 6.5257 17 14 -0.2997 7.4393 8.6252 18 1 1.1027 7.2465 9.0736 19 1 -0.5263 8.8725 8.3093 20 1 -1.2268 7.0180 9.7060 21 6 0.9733 3.1803 4.0094 22 6 2.3767 2.0314 -1.2629 23 1 2.7931 3.0178 -1.0585 24 6 1.1276 2.1759 -2.1346 25 6 3.4155 1.1815 -1.9973 26 6 3.8808 1.9186 -3.2548 27 6 4.6137 0.9340 -1.0785 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3912 0.5005 2.6034 34 1 0.7205 1.0907 2.4338 35 1 4.0154 1.7272 3.9209 36 1 4.3843 3.2847 5.7904 37 1 2.5723 4.7790 6.5261 38 1 -2.5071 6.9721 6.8955 39 1 0.0169 3.1503 3.5088 40 1 0.3875 2.7813 -1.6115 41 1 1.3943 2.6592 -3.0744 42 1 0.7112 1.1895 -2.3391 43 1 2.9707 0.2272 -2.2793 44 1 4.5563 1.2784 -3.8222 45 1 3.0164 2.1700 -3.8693 46 1 4.4012 2.8326 -2.9685 47 1 4.2822 0.4089 -0.1827 48 1 5.3540 0.3289 -1.6019 49 1 5.0586 1.8883 -0.7966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089783675.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:18 Heat of formation + Delta-G solvation = -71.309105 kcal Electronic energy + Delta-G solvation = -27300.367202 eV Core-core repulsion = 23613.043808 eV Total energy + Delta-G solvation = -3687.323393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48199 -40.62946 -38.67829 -37.86820 -35.68201 -34.34115 -33.39434 -31.59973 -31.00390 -30.70068 -28.64977 -27.68028 -27.21162 -24.56356 -24.25637 -23.26960 -22.69382 -21.08010 -19.90052 -19.41784 -18.74763 -18.21470 -17.17540 -16.85204 -16.66109 -16.16734 -16.09410 -15.53178 -15.48655 -15.15560 -15.06192 -14.79370 -14.51148 -14.37649 -14.10664 -13.97239 -13.67838 -13.57431 -13.38991 -13.15053 -13.06442 -12.98180 -12.87194 -12.76188 -12.48234 -12.39859 -12.30550 -12.19694 -12.09198 -11.87526 -11.75906 -11.64729 -11.38296 -11.20952 -10.84820 -10.74815 -9.64116 -9.59988 -8.98768 -8.47893 -6.16526 0.51246 0.74697 1.33213 1.42214 1.52294 1.68335 2.05779 2.17057 2.82682 3.15373 3.42685 3.60624 3.80065 3.96142 4.00788 4.07197 4.08168 4.15696 4.28037 4.33372 4.39512 4.46250 4.53204 4.54509 4.57567 4.59357 4.70239 4.72560 4.78843 4.81184 4.92936 4.95672 5.01796 5.03250 5.07130 5.11067 5.12471 5.17147 5.28627 5.29881 5.42876 5.44887 5.50136 5.63977 5.71728 5.73842 5.75670 6.02191 6.21803 6.46127 6.96635 7.27389 7.78369 8.76057 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.002729 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.057179 B =10257.471189 C =10568.046647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.514 3.486 5 O -0.582 6.582 6 C -0.091 4.091 7 C -0.024 4.024 8 C -0.181 4.181 9 C -0.072 4.072 10 C -0.247 4.247 11 C 0.113 3.887 12 O -0.235 6.235 13 C -0.414 4.414 14 H 0.100 0.900 15 C -0.025 4.025 16 N -0.923 5.923 17 Si 1.021 2.979 18 H -0.252 1.252 19 H -0.269 1.269 20 H -0.265 1.265 21 C -0.193 4.193 22 C 0.135 3.865 23 H 0.061 0.939 24 C -0.158 4.158 25 C -0.095 4.095 26 C -0.147 4.147 27 C -0.143 4.143 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.273 0.727 39 H 0.102 0.898 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.041 0.959 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.426 -18.504 -17.373 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.303 3.697 5 O -0.461 6.461 6 C -0.130 4.130 7 C -0.025 4.025 8 C -0.199 4.199 9 C -0.090 4.090 10 C -0.266 4.266 11 C 0.063 3.937 12 O -0.142 6.142 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.222 4.222 16 N -0.561 5.561 17 Si 0.840 3.160 18 H -0.175 1.175 19 H -0.194 1.194 20 H -0.190 1.190 21 C -0.213 4.213 22 C 0.032 3.968 23 H 0.079 0.921 24 C -0.215 4.215 25 C -0.114 4.114 26 C -0.204 4.204 27 C -0.200 4.200 28 H 0.108 0.892 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.222 -17.788 -17.458 26.939 hybrid contribution -0.431 1.227 0.833 1.544 sum 9.791 -16.562 -16.624 25.427 Atomic orbital electron populations 1.22373 0.95778 1.03490 1.02026 1.21874 0.94538 0.80745 1.05345 1.48094 1.64770 1.15166 1.05230 1.20871 0.76731 0.85851 0.86201 1.90725 1.47732 1.20120 1.87541 1.20777 1.05662 0.98211 0.88317 1.19205 0.92832 0.95234 0.95223 1.20946 0.97026 1.03091 0.98836 1.21129 0.98004 0.93731 0.96158 1.21289 0.94289 1.05841 1.05185 1.19851 0.88943 0.90411 0.94445 1.83936 1.37674 1.49393 1.43208 1.21872 0.99949 1.23507 1.03648 0.88243 1.26632 0.93923 0.98865 1.02752 1.70204 1.03597 1.40410 1.41898 0.84504 0.79432 0.76961 0.75110 1.17508 1.19367 1.19005 1.20177 1.00685 1.00315 1.00104 1.21154 0.95703 0.96778 0.83210 0.92053 1.22224 0.96633 1.02993 0.99690 1.21409 0.94932 0.99624 0.95391 1.21871 1.01826 1.00148 0.96590 1.21776 0.97799 1.00808 0.99613 0.89216 0.93879 0.92373 0.87597 0.88590 0.84233 0.86755 0.83640 0.83616 0.86395 0.91847 0.87989 0.94653 0.90249 0.90060 0.88612 0.90988 0.91416 0.93940 0.92717 0.91187 0.95106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.96 71.98 0.72 -1.48 16 2 C 0.10 1.11 4.92 86.38 0.42 1.53 16 3 N -0.60 -12.11 1.48 -797.83 -1.18 -13.29 16 4 C 0.51 15.05 7.63 87.66 0.67 15.72 16 5 O -0.58 -23.86 15.37 -3.02 -0.05 -23.90 16 6 C -0.09 -2.33 4.44 29.10 0.13 -2.20 16 7 C -0.02 -0.90 4.37 -19.88 -0.09 -0.99 16 8 C -0.18 -6.21 9.70 22.30 0.22 -6.00 16 9 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 10 C -0.25 -11.73 9.17 22.39 0.21 -11.52 16 11 C 0.11 6.16 6.65 22.58 0.15 6.31 16 12 O -0.24 -15.11 9.76 -22.73 -0.22 -15.33 16 13 C -0.41 -25.42 9.49 67.92 0.64 -24.77 16 14 H 0.10 5.65 5.20 -2.91 -0.02 5.63 16 15 C -0.02 -1.47 5.49 84.83 0.47 -1.00 16 16 N -0.92 -58.80 13.67 21.62 0.30 -58.50 16 17 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 18 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 C -0.19 -9.13 9.65 22.39 0.22 -8.92 16 22 C 0.13 2.67 2.22 44.99 0.10 2.77 16 23 H 0.06 1.73 6.91 -2.39 -0.02 1.71 16 24 C -0.16 -2.62 8.25 71.98 0.59 -2.02 16 25 C -0.09 -1.28 2.13 -10.79 -0.02 -1.30 16 26 C -0.15 -1.79 9.05 71.98 0.65 -1.14 16 27 C -0.14 -2.21 8.98 71.98 0.65 -1.57 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.04 0.71 6.57 -2.39 -0.02 0.69 16 30 H 0.06 0.77 6.00 -2.39 -0.01 0.76 16 31 H 0.11 0.73 6.30 -2.39 -0.02 0.71 16 32 H 0.10 0.80 6.67 -2.39 -0.02 0.79 16 33 H 0.14 2.37 7.35 -2.39 -0.02 2.35 16 34 H 0.11 2.62 6.45 -2.39 -0.02 2.61 16 35 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 40 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 1.11 6.46 -2.39 -0.02 1.09 16 42 H 0.08 0.98 6.45 -2.39 -0.02 0.97 16 43 H 0.10 0.87 6.73 -2.39 -0.02 0.86 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.72 6.35 -2.39 -0.02 0.70 16 46 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.85 7.17 -2.39 -0.02 0.84 16 48 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -84.13 384.87 7.76 -76.37 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.94 Total: 27.05 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 5.94 Total: -39.08 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.88 Total: -71.80 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.27 Total: -39.24 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -84.13 7.76 -76.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089783675.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.057 kcal (2) G-P(sol) polarization free energy of solvation -84.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds